Table S1 List of quality estimates of sequencing.

Table S2 List of assembly quality estimates.

Table S3 Location of outliers on autosomallinkage groups, with start position (zero-based) of 100 kbwindows, the number of genotyped sites (after masking) within thewindow, and the the top (99) or bottom (01) 1% windows designatedas outliers for either π or Tajima’s D, orboth.

Table S4 List of large SV and the method by which they are called.

mec5680_sm_TableS1.pdf46KSupporting info item
mec5680_sm_TableS2.pdf39KSupporting info item
mec5680_sm_TableS3.pdf62KSupporting info item
mec5680_sm_TableS4.pdf321KSupporting info item

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