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Table S1 Population numbers, sampling locations and their coordinates, number of individuals analysed for AFLP (NAFLP) and plastid DNA (Ncp) variation, encountered plastid haplotypes, GenBank accession numbers, herbarium and number of voucher specimens and collectors of 62 populations of Saxifraga oppositifolia used in the present study.

Fig. S1 Maximum clade credibility tree from strict clock Bayesian analysis of plastid DNA (psbA-trnH, trnTF) haplotypes of Saxifraga oppositifolia with the software BEAST.

Fig. S2 Range connectivity and ancestral location probabilities among nine discrete geographical regions in Saxifraga oppositifolia inferred using models of geographic diffusion applied to the complete data set (i.e. including all sampled populations from the Alps).

Fig. S3 Bayesian Skyline Plot of Saxifraga oppositifolia showing changes in effective population size over time.

Text S1 Information regarding the definition of geographic regions.

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