SEARCH

SEARCH BY CITATION

References

  • Aldea, M., Garrido, T., Hernández-Chico, C., Vicente, M. & Kushner, S.R. (1989) Induction of a growth-phase-dependent promoter triggers transcription of bolA, an Escherichia coli morphogene. EMBO J 8: 39233931.
  • Aldea, M., Garrido, T., Pla, J. & Vicente, M. (1990) Division genes in Escherichia coli are expressed coordinately to cell septum requirements by gearbox promoters. EMBO J 9: 37873794.
  • Altuvia, S., Almirón, M., Huisman, G., Kolter, R. & Storz, G. (1994) The dps promoter is activated by OxyR during growth and by IHF and σS in stationary phase. Mol Microbiol 13: 265272.
  • Ballesteros, M., Kusano, S., Ishihama, A. & Vicente, M. (1998) The ftsQ1p gearbox promoter of Escherichia coli is a major sigma S-dependent promoter in the ddlB-ftsA region. Mol Microbiol 30: 419430.DOI: 10.1046/j.1365-2958.1998.01077.x
  • Barne, K.A., Bown, J.A., Busby, S.J.W. & Minchin, S.D. (1997) Region 2.5. of the Escherichia coli RNA polymerase σ70 subunit is responsible for the recognition of the ‘extended −10’ motif at promoters. EMBO J 16: 40344040.DOI: 10.1093/emboj/16.13.4034
  • Becker, G., Klauck, E. & Hengge-Aronis, R. (1999) Regulation of RpoS proteolysis in Escherichia coli: the response regulator RssB is a recognition factor that interacts with the turnover element in RpoS. Proc Natl Acad Sci USA 96: 64396444.DOI: 10.1073/pnas.96.11.6439
  • Becker, G., Klauck, E. & Hengge-Aronis, R. (2000) The response regulator RssB, a recognition factor for sS proteolysis in Escherichia coli, can act like an anti-σS factor. Mol Microbiol 35: 657666.DOI: 10.1046/j.1365-2958.2000.01736.x
  • Bohannon, D.E., Connell, N.K.L., Tormo, A., Espinosa-Urgel, M., Zambrano, M.M. & Kolter, R. (1991) Stationary-phase-inducible ‘gearbox’ promoters: Differential effects of katF mutations and role of σ70. J Bacteriol 173: 44824492.
  • Bordes, P., Repoila, R., Kolb, A. & Gutierrez, C. (2000) Involvement of differential efficiency of transcription by EσS and Eσ70 RNA polymerase holenzymes in growth phase regulation of the Escherichia coli osmE promoter. Mol Microbiol 35: 845853.DOI: 10.1046/j.1365-2958.2000.01758.x
  • Bouvier, J., Gordia, S., Kampmann, G., Lange, R., Hengge-Aronis, R. & Gutierrez, C. (1998) Interplay between global regulators of Escherichia coli: effect of RpoS, H-NS and Lrp on transcription of the gene osmC. Mol Microbiol 28: 971980.DOI: 10.1046/j.1365-2958.1998.00855.x
  • Burr, T., Mitchell, J., Kolb, A., Minchin, S. & Busby, S. (2000) DNA sequence elements located immediately upstream of the −10 hexamer in Escherichia coli promoters: a systematic study. Nucleic Acids Res 28: 18641870.DOI: 10.1093/nar/28.9.1864
  • Colland, F., Fujita, N., Kotlarz, D., Ishihama, A. & Kolb, A. (1999) Positioning of σS, the stationary phase σ factor, in Escherichia coli RNA polymerase–promoter open complexes. EMBO J 18: 40494059.DOI: 10.1093/emboj/18.14.4049
  • Colland, F., Barth, M., Hengge-Aronis, R. & Kolb, A. (2000) Sigma factor selectivity of Escherichia coli RNA polymerase: a role for CRP, IHF and Lrp transcription factors. EMBO J 19: 30283037.DOI: 10.1093/emboj/19.12.3028
  • Ding, Q., Kusano, S., Villarejo, M. & Ishihama, A. (1995) Promoter selectivity control of Escherichia coli RNA polymerase by ionic strength: differential recognition of osmoregulated promoters by EσD and EσS holoenzymes. Mol Microbiol 16: 649656.
  • Eisenstark, A., Calcutt, M.J., Becker-Hapak, M. & Ivanova, A. (1999) Role of Escherichia coli rpoS and associated genes in defense against oxidative damage. Free Radical Biol Med 21: 975993.
  • Espinosa-Urgel, M., Chamizo, C. & Tormo, A. (1996) A consensus structure for σS-dependent promoters. Mol Microbiol 21: 657659.
  • Gentry, D.R., Hernandez, V.J., Nguyen, L.H., Jensen, D.B. & Cashel, M. (1993) Synthesis of the stationary-phase sigma factor σS is positively regulated by ppGpp. J Bacteriol 175: 79827989.
  • Gross, C.A., Chan, C.L. & Lonetto, M.A. (1996) A structure/function analysis of Escherichia coli RNA polymerase. Phil Trans R Soc Lond B 351: 475482.
  • Guzman, L.M., Belin, D., Carson, M.J. & Beckwith, J. (1995) Tight regulation, modulation, and high-level expression by vectors containing the arabinose pBAD promoter. J Bacteriol 177: 41214130.
  • Hengge-Aronis, R. (1999) Interplay of global regulators in the general stress response of Escherichia coli. Curr Opin Microbiol 2: 148152.DOI: 10.1016/s1369-5274(99)80026-5
  • Hengge-Aronis, R. (2000) The general stress response in Escherichia coli. In Bacterial Stress Responses. Storz, G., and Hengge-Aronis, R. (eds). Washington, DC: American Society for Microbiology Press, pp. 161178.
  • Hengge-Aronis, R. & Fischer, D. (1992) Identification and molecular analysis of glgS, a novel growth phase-regulated and rpoS-dependent gene involved in glycogen synthesis in Escherichia coli. Mol Microbiol 6: 18771886.
  • Jung, J.U., Gutierrez, C., Martin, F., Ardourel, M. & Villarejo, M. (1990) Transcription of osmB, a gene encoding an Escherichia coli lipoprotein, is regulated by dual signals. J Biol Chem 265: 1057410581.
  • Kusano, S., Ding, Q.Q., Fujita, N. & Ishihama, A. (1996) Promoter selectivity of Escherichia coli RNA polymerase Eσ70 and Eσ38 holoenzymes – effect of DNA supercoiling. J Biol Chem 271: 19982004.
  • Kvint, K., Farewell, A. & Nystrom, T. (2000) RpoS-dependent promoters require guanosine tetraphosphate for induction even in the presence of high levels of sigma(S). J Biol Chem 275: 1479514798.
  • Laemmli, U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680685.
  • Lange, R. & Hengge-Aronis, R. (1991) Identification of a central regulator of stationary-phase gene expression in Escherichia coli. Mol Microbiol 5: 4959.
  • Lange, R. & Hengge-Aronis, R. (1994) The cellular concentration of the σS subunit of RNA-polymerase in Escherichia coli is controlled at the levels of transcription, translation and protein stability. Genes Dev 8: 16001612.
  • Lange, R., Barth, M. & Hengge-Aronis, R. (1993) Complex transcriptional control of the σS-dependent stationary phase-induced and osmotically regulated osmY (csi-5) gene suggests novel roles for Lrp, cyclic AMP (cAMP) receptor protein-cAMP complex and integration host factor in the stationary phase response of Escherichia coli. J Bacteriol 175: 79107917.
  • Lange, R., Fischer, D. & Hengge-Aronis, R. (1995) Identification of transcriptional start sites and the role of ppGpp in the expression of rpoS, the structural gene for the σS subunit of RNA-polymerase in Escherichia coli. J Bacteriol 177: 46764680.
  • Loewen, P.C. & Hengge-Aronis, R. (1994) The role of the sigma factor σS (KatF) in bacterial global regulation. Annu Rev Microbiol 48: 5380.
  • Lucht, J.M., Dersch, P., Kempf, B. & Bremer, E. (1994) Interactions of the nucleoid-associated DNA-binding protein H-NS with the regulatory region of the osmotically controlled proU operon on Escherichia coli. J Biol Chem 269: 65786586.
  • Malhotra, A., Severinova, E. & Darst, S.A. (1996) Crystal structure of a σ70 subunit fragment from E. coli RNA polymerase. Cell 87: 127136.
  • Marschall, C. & Hengge-Aronis, R. (1995) Regulatory characteristics and promoter analysis of csiE, a stationary phase-inducible σS-dependent gene under positive control of cAMP-CRP in Escherichia coli. Mol Microbiol 18: 175184.
  • Marschall, C., Labrousse, V., Kreimer, M., Weichart, D., Kolb, A. & Hengge-Aronis, R. (1998) Molecular analysis of the regulation of csiD, a carbon starvation-inducible gene in Escherichia coli that is exclusively dependent on σS and requires activation by cAMP-CRP. J Mol Biol 276: 339353.DOI: 10.1006/jmbi.1997.1533
  • Miller, J.H. (1972) Experiments in Molecular Genetics. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
  • Nguyen, L.H. & Burgess, R.R. (1997) Comparative analysis of the interactions of Escherichia coliσS and σ70 RNA polymerase holoenzyme with the stationary phase-specific bolAp1 promoter. Biochemistry 36: 17481754.
  • Nguyen, L.H., Jensen, D.B., Thompson, N.E., Gentry, D.R. & Burgess, R.R. (1993) In vitro functional characterization of overproduced Escherichia coli katF/rpoS gene product. Biochemistry 32: 1111211117.
  • Ozoline, O.N., Deev, A.A. & Arkhipova, M.V. (1997) Non-canonical sequence elements in the promoter structure. Cluster analysis of promoters recognized by Escherichia coli RNA polymerase. Nucleic Acids Res 25: 47034709.DOI: 10.1093/nar/25.23.4703
  • Powell, B.S., Court, D.L., Nakamura, Y., Rivas, M.P. & Turnbough, C.L., Jr (1994) Rapid confirmation of single copy lambda prophage integration by PCR. Nucleic Acids Res 22: 57655766.
  • Rajkumari, K., Kusano, S., Ishihama, A., Mizuno, T. & Gowrishankar, J. (1996) Effects of H-NS and potassium glutamate on σS- and σ70-directed transcription in vitro from osmotically regulated P1 and P2 promoters of proU in Escherichia coli. J Bacteriol 178: 41764181.
  • Repoila, F. & Gutierrez, C. (1991) Osmotic induction of the periplasmic trehalase in Escherichia coli K12: characterization of the treA promoter. Mol Microbiol 5: 747755.
  • Ross, W., Gosink, K.K., Salomon, J., Igarashi, K., Zou, C. & Ishihama, A., et al. (1993) A third recognition element in bacterial promoters – DNA binding by the alpha-subunit of RNA polymerase. Science 262: 14071413.
  • Ross, W., Aiyar, S.E., Salomon, J. & Gourse, R.L. (1998) Escherichia coli promoters with UP elements of different strengths: modular structure of bacterial promoters. J Bacteriol 180: 53755383.
  • Rost, B. & Sander, C. (1993) Prediction of protein structure at better than 70% accuracy. J Mol Biol 232: 584599.DOI: 10.1006/jmbi.1993.1413
  • Rost, B. & Sander, C. (1994) Combining evolutionary information and neural networks to predict protein secondary structure. Proteins 19: 5572.
  • Rost, B., Sander, C. & Schneider, R. (1994) PHD – an automatic mail server for protein secondary structure prediction. CABIOS 10: 5360.
  • Saporito, S.M., Smith-White, B.J. & Cunningham, R.P. (1988) Nucleotide sequence of the xthA gene of Escherichia coli K12. J Bacteriol 170: 45424547.
  • Simons, R.W., Houman, F. & Kleckner, N. (1987) Improved single and multicopy lac-based cloning vectors for protein and operon fusions. Gene 53: 8596.
  • Tanaka, K., Takayanagi, Y., Fujita, N., Ishihama, A. & Takahashi, H. (1993) Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, σ38, is a second principal sigma factor of RNA polymerase in stationary phase Escherichia coli. Proc Natl Acad Sci USA 90: 35113515.
  • Tanaka, K., Kusano, S., Fujita, N., Ishihama, A. & Takahashi, H. (1995) Promoter determinants for Escherichia coli RNA polymerase holoenzyme containing σ38 (the rpoS gene product). Nucleic Acids Res 23: 827834.
  • Travers, A. (1980) Promoter sequence for stringent control of bacterial ribonucleic acid synthesis. J Bacteriol 41: 973976.
  • Travers, A.A. (1984) Conserved features of coordinately regulated E. coli promoters. Nucleic Acids Res 12: 26052618.
  • Utsumi, R., Nakayama, T., Iwamoto, N., Kohda, K., Kawamukai, M. & Tanabe, H., et al. (1995) Mutational analysis of the fic promoter recognized by RpoS (sigma (38)) in Escherichia coli. Biosci Biotechnol Biochem 59: 15731575.
  • Waldburger, C., Gardella, T., Wong, R. & Susskind, M.M. (1990) Changes in conserved region 2 of Escherichia coliσ70 affecting promoter recognition. J Mol Biol 215: 267276.
  • Weichart, D., Lange, R., Henneberg, N. & Hengge-Aronis, R. (1993) Identification and characterization of stationary phase-inducible genes in Escherichia coli. Mol Microbiol 10: 407420.
  • Xu, J.M. & Johnson, R.C. (1995a) aldB, an RpoS-dependent gene in Escherichia coli encoding an aldehyde dehydrogenase that is repressed by Fis and activated by CRP. J Bacteriol 177: 31663175 .
  • Xu, J. & Johnson, R.C. (1995b) Fis activates the RpoS-dependent stationary phase expression of proP in Escherichia coli. J Bacteriol 177: 52225231.