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  • Alvarez, M.A., Herrero, M., and Suarez, J.E. (1998) The site-specific recombination system of the Lactobacillus species bacteriophage A2 integrates in gram-positive and gram-negative bacteria. Virology 250: 185193.
  • Berman, M.L., Enquist, L.W., and Silhavy, T.J. (1982) Advanced Bacterial Genetics. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, p. 132.
  • Bjork, G.R. (1977) Stringent regulation of the synthesis of a transfer ribonucleic acid biosynthetic enzyme: transfer ribonucleic acid (m5U) methyltransferase from Escherichia coli. J Bacteriol 130: 635641.
  • Campbell, A. (2003) The future of bacteriophage biology. Nature Rev 4: 471477.
  • Capela, D., Barloy-Hubler, F., Gouzy, J., Bothe, G., Ampe, F., Batut, J., et al. (2001) Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021. Proc Natl Acad Sci USA 98: 98779882.
  • Cheetham, B.F., and Katz, M.E. (1995) A role for bacteriophages in the evolution and transfer of bacterial virulence determinants. Mol Microbiol 18: 201208.
  • Craig, N.L. (1988) The mechanism of conservative site-specific recombination. Annu Rev Genet 22: 77105.
  • Csiszovszki, Z., Buzás, Z., Semsey, S., Ponyi, T., Papp, P.P., and Orosz, L. (2003) immX immunity region of Rhizobium phage 16-3: two overlapping cistrons of repressor function. J Bacteriol 185: 43824392.
  • Dallmann, G., Papp, P., and Orosz, L. (1987) Related repressor specificity of unrelated phages. Nature 330: 398401.
  • Dorgai, L., Olasz, F., Berenyi, M., Dallmann, G., Pay, A., and Orosz, L. (1981) Orientation of genetic and physical map of Rhizobium meliloti temperate phage 16-3. Mol Gen Genet 182: 321325.
  • Dorgai, L., Papp, I., Papp, P., Kalman, M., and Orosz, L. (1993) Nucleotide sequences of the sites involved in the integration of phage 16-3 of Rhizobium meliloti 41. Nucleic Acids Res 21: 1671.
  • Dupont, L., Boizet-Bonhoure, B., Coddeville, M., Auvray, F., and Ritzenthaler, P. (1995) Characterization of genetic elements required for site-specific integration of Lactobacillus delbrueckii subsp. bulgaricus bacteriophage mv4 and construction of an integration-proficient vector for Lactobacillus plantarum. J Bacteriol 177: 583595.
  • Ferenczi, S., Ganyu, A., Blaha, B., Semsey, S., Nagy, T., Csiszovszki, Z., et al. (2004) Integrative plasmid vector for constructing single-copy reporter systems to study gene regulation in Rhizobium meliloti and related species. Plasmid 52: 5762.
  • Figurski, D.H., and Helinski, D.R. (1979) Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc Natl Acad Sci USA 76: 16481652.
  • Gabriel, K., Schmid, H., Schmidt, U., and Rausch, H. (1995) The actinophage RP3 DNA integrates site-specifically into the putative tRNA (Arg) (AGG) gene of Streptomyces rimosus. Nucleic Acids Res 23: 5863.
  • Groisman, E.A., and Ochman, H. (1996) Pathogenicity islands: bacterial evolution in quantum leaps. Cell 87: 791794.
  • Hacker, J., and Kaper, J.B. (2000) Pathogenicity islands and evolution of microbes. Annu Rev Microbiol 54: 641680.
  • Hacker, J., Blum-Oehler, G., Mühldorfer, I., and Tschape, H. (1997) Pathogenicity islans of virulent bacteria: structure, function and impact on microbial evolution. Mol Microbiol 23: 10891097.
  • Hanahan, D. (1983) Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166: 557580.
  • Hauser, M.A., and Scocca, J.J. (1992) Site-specific integration of the Haemophilus influenzae bacteriophage HP1. Identification of the points of recombinational strand exchange and the limits of the host attachment site. J Biol Chem 267: 68596864.
  • Ishihama, A. (1997) Adaptation of gene expression in stationary phase bacteria. Curr Opin Genet Dev 7: 582588.
  • Kiss, G.B., Dobo, K., Dusha, I., Breznovits, A., Orosz, L., Vincze, E., et al. (1980) Isolation and characterization of an R-prime plasmid from Rhizobium meliloti. J Bacteriol 141: 121128.
  • Kleina, L.G., Masson, J.M., Normanly, J., Abelson, J., and Miller, J.H. (1990) Construction of Escherichia coli amber suppressor tRNA genes. II. Synthesis of additional tRNA genes and improvement of suppressor efficiency. J Mol Biol 213: 705717.
  • Kovach, M.E., Elzer, P.H., Hill, D.S., Robertson, G.T., Farris, M.A., Roop, R.M., and Peterson, K.M. (1995) Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 166: 175176.
  • Landt, O., Grunert, H.P., and Hahn, U. (1990) A general method for rapid site-directed mutagenesis using the polymerase chain reaction. Gene 96: 125128.
  • Landy, A. (1989) Dynamic, structural, and regulatory aspects of lambda site-specific recombination. Annu Rev Biochem 58: 913949.
  • Miller, J.H. (1972) Experiments in Molecular Genetics. Plainview, NY: Cold Spring Harbor Laboratory Press, p. 352.
  • Olasz, F., Dorgai, L., Papp, P., Hermesz, E., Kosa, E., and Orosz, L. (1985) On the site specific recombination of phage 16-3 of Rhizobium meliloti: identification of genetic elements and att recombinations. Mol Gen Genet 201: 289295.
  • Orosz, L. (1980) Methods for analysis of the C cistron of temperate phage 16-3 of Rhizobium meliloti. Genetics 94: 265276.
  • Orosz, L., Sváb, Z., Kondorosi, A., and Sík, T. (1973) Genetic studies on rhizobiophage 16-3. I. Genes and functions on the chromosome. Mol Gen Genet 125: 341350.
  • Papp, I., Dorgai, L., Papp, P., Jonas, E., Olasz, F., and Orosz, L. (1993a) The bacterial attachment site of the temperate Rhizobium phage 16-3 overlaps the 3′ end of a putative proline tRNA gene. Mol Gen Genet 240: 258264.
  • Papp, P.P., Chattoraj, D.K., and Schneider, T.D. (1993b) Information analysis of sequences that bind the replication initiator RepA. J Mol Biol 233: 219230.
  • Papp, P.P., Nagy, T., Ferenczi, S., Élõ, P., Csiszovszki, Z., Buzás, Z., et al. (2002) Binding sites of different geometries for the 16-3 phage repressor. Proc Natl Acad Sci USA 99: 87908795.
  • Pierson, L.S., and Kahn, M.L. (1987) Integration of satellite bacteriophage P4. Escherichia coli. DNA sequences of the phage and host regions involved in site-specific recombination. J Mol Biol 196: 487496.
  • Pearson, W.R., and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85: 24442448.
  • Reese, M.G. (1996) Applicaton of a time-delay neural network to promoter annotation in the Drosophilia melanogaster genome. Comput Chem 26: 5156.
  • Reiter, W.D., and Palm, P. (1990) Identification and characterization of a defective SSV1 genome integrated into a tRNA gene in the archaebacterium Sulfolobus sp. B12. Mol Gen Genet 221: 6571.
  • Reiter, W.D., Palm, P., and Yeats, S. (1989) Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements. Nucleic Acids Res 17: 19071914.
  • Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
  • Sanger, F., Nicklen, S., and Coulson, A.R. (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74: 54635467.
  • Semsey, S., Papp, I., Buzás, Z., Patthy, A., Orosz, L., and Papp, P.P. (1999) Identification of site-specific recombination genes int and xis of the Rhizobium temperate phage 16-3. J Bacteriol 181: 41854192.
  • Semsey, S., Blaha, B., Köles, K., Orosz, L., and Papp, P.P. (2002) Site-specific integrative elements of rhizobiophage 16-3 can integrate into proline tRNA (CGG) genes in different bacterial genera. J Bacteriol 184: 177182.
  • Söll, D., RajBhandary, U.L., (1995) tRNA Structure, Biosynthesis, and Function. Washington: American Society For Microbiology Press.
  • Svab, Z., Kondorosi, A., and Orosz, L. (1978) Specialized transduction of a cysteine marker by Rhizobium meliloti phage 16-3. J Gen Microbiol 106: 321327.
  • Szende, K., and Ördögh, F. (1960) Die lysogenie von Rhizobium meliloti. Naturwissenschaften 47: 404405.
  • Tani, T.H., Khodursky, A., Blumenthal, R.M., Brown, P.O., and Matthews, R.G. (2002) Adaptation to famine: a family of stationary-phase genes revealed by microarray analysis. Proc Natl Acad Sci USA 99: 1347113476.
  • Tao, H., Bausch, C., Richmond, C., Blattner, F.R., and Conway, T. (1999) Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media. J Bacteriol 181: 64256440.
  • Thatte, V., Bradley, D.E., and Iyer, V.N. (1985) N conjugative transfer system of plasmid pCU1. J Bacteriol 163: 12291236.
  • Uchiumi, T., Abe, M., and Higashi, S. (1998) Integration of the temperate phage phiU into putative tRNA gene on the chromosome of its host Rhizobium leguminosarum biovar trifolii. J Gen Appl Microbiol 44: 9399.
  • Vogtli, M., and Cohen, S.N. (1992) The chromosomal integration site for the Streptomyces plasmid SLP1 is a functional tRNA (Tyr) gene essential for cell viability. Mol Microbiol 6: 30413050.