The following supplementary material is available for this article: Appendix S1. Calculating ?. Appendix S2. Interpretation of a. Table S1. Predicted RNA secondary structure of sequences at and around primer extension end-points. Fig. S1. Abundances of representative Xp10 transcripts. Normalized (relative to (b-actin spot) abundances of the 32L (Xp10 RNAP) transcript, 45L (p7) transcript, 03R (endonuclease) transcript and 07R (head portal) transcript, during the course of the Xp10 infection, are shown. Transcript abundance is determined as the amount of radioactivity hybridized to an array spot containing PCR fragments corresponding to a given gene.

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