SEARCH

SEARCH BY CITATION

References

  • Aiba, H., Adhya, S., and de Crombrugghe, B. (1981) Evidence for two functional gal promoters in intact Escherichia coli cells. J Biol Chem 256: 1190511910.
  • Alekshun, M.N., Levy, S.B., Mealy, T.R., Seaton, B.A., and Head, J.F. (2001) The crystal structure of MarR, a regulator of multiple antibiotic resistance, at 2.3 Å Resolution. Nat Struct Biol 8: 710714.
  • Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 33893402.
  • Andro, T., Chambost, J.P., Kotoujansky, A., Cattaneo, J., Bertheau, Y., Barras, F., et al. (1984) Mutants of Erwinia chrysanthemi defective in secretion of pectinase and cellulase. J Bacteriol 160: 11991203.
  • Bainton, N.J., Stead, P., Chhabra, S.R., Bycroft, B.W., Salmond, G.P., Stewart, G.S., and Williams, P. (1992) N-(3-oxohexanoyl)-l-homoserine lactone regulates carbapenem antibiotic production in Erwinia carotovora. Biochem J 288: 9971004.
  • Baker, D.A., and Kelly, J.M. (2004) Structure, function and evolution of microbial adenylyl and guanylyl cyclases. Mol Microbiol 52: 12291242.
  • Barne, K.A., Bown, J.A., Busby, S.J., and Minchin, S.D. (1997) Region 2.5 of the Escherichia coli RNA polymerase sigma70 subunit is responsible for the recognition of the ‘extended-10’ motif at promoters. EMBO J 16: 40344040.
  • Bijlsma, J.J., and Groisman, E.A. (2003) Making informed decisions: regulatory interactions between two-component systems. Trends Microbiol 11: 359366.
  • Busenlehner, L.S., Pennella, M.A., and Giedroc, D.P. (2003) The SmtB/ArsR family of metalloregulatory transcriptional repressors: structural insights into prokaryotic metal resistance. FEMS Microbiol Rev 27: 131143.
  • Bycroft, B.W., Maslen, C., Box, S.J., Brown, A., and Tyler, J.W. (1987) The isolation and characterisation of (3R,5R)- and (3S,5R)-carbapenem-3-carboxylic acid from Serratia and Erwinia species and their putative biosynthetic role. J Chem Soc Chem Comm 21: 16231625.
  • Cang, S., Sanada, M., Johdo, O., Ohta, S., Nagamatsu, Y., and Yoshimoto, A. (2000) High production of prodigiosin by Serratia marcescens grown on ethanol. Biotechnol Lett 22: 17611765.
  • Cerdeño, A.M., Bibb, M.J., and Challis, G.L. (2001) Analysis of the prodiginine biosynthesis gene cluster of Streptomyces coelicolor A3 (2): new mechanisms for chain initiation and termination in modular multienzymes. Chem Biol 8: 817829.
  • Chancey, S.T., Wood, D.W., and Pierson, L.S., (1999) 3rd Two-component transcriptional regulation of N-acyl-homoserine lactone production in Pseudomonas aureofaciens. Appl Environ Microbiol 65: 22942299.
  • Cox, A.R., Thomson, N.R., Bycroft, B., Stewart, G.S., Williams, P., and Salmond, G.P. (1998) A pheromone-independent CarR protein controls carbapenem antibiotic synthesis in the opportunistic human pathogen Serratia marcescens. Microbiology 144: 201209.
  • Cren, M., Kondorosi, A., and Kondorosi, E. (1995) NolR controls expression of the Rhizobium meliloti nodulation genes involved in the core Nod factor synthesis. Mol Microbiol 15: 733747.
  • Crow, M.A. (2001) The Genetic Regulation of Pigment and Antibiotic Biosynthesis in Serratia sp. PhD Thesis. Cambridge: Department of Biochemistry, The University of Cambridge.
  • Derzelle, S., Duchaud, E., Kunst, F., Danchin, A., and Bertin, P. (2002) Identification, characterization, and regulation of a cluster of genes involved in carbapenem biosynthesis in Photorhabdus luminescens. Appl Environ Microbiol 68: 37803789.
  • Dutta, R., Qin, L., and Inouye, M. (1999) Histidine kinases: diversity of domain organization. Mol Microbiol 34: 633640.
  • Eriksson, A.R., Andersson, R.A., Pirhonen, M., and Palva, E.T. (1998) Two-component regulators involved in the global control of virulence in Erwinia carotovora subsp. carotovora. Mol Plant Microbe Interact 11: 743752.
  • Harris, S.J., Shih, Y.L., Bentley, S.D., and Salmond, G.P. (1998) The hexA gene of Erwinia carotovora encodes a LysR homologue and regulates motility and the expression of multiple virulence determinants. Mol Microbiol 28: 705717.
  • Harris, A.K., Williamson, N.R., Slater, H., Cox, A., Abbasi, S., Foulds, I., et al. (2004) The Serratia gene cluster encoding biosynthesis of the red antibiotic, prodigiosin, shows species- and strain-dependent genome context variation. Microbiology 150: 35473560.
  • Heeb, S., and Haas, D. (2001) Regulatory roles of the GacS/GacA two-component system in plant-associated and other Gram-negative bacteria. Mol Plant Microbe Interact 14: 13511363.
  • Heeb, S., Blumer, C., and Haas, D. (2002) Regulatory RNA as mediator in GacA/RsmA-dependent global control of exoproduct formation in Pseudomonas fluorescens CHA0. J Bacteriol 184: 10461056.
  • Hood, D.W., Heidstra, R., Swoboda, U.K., and Hodgson, D.A. (1992) Molecular genetic analysis of proline and tryptophan biosynthesis in Streptomyces coelicolor A3 (2): interaction between primary and secondary metabolism – a review. Gene 115: 512.
  • Horng, Y.T., Deng, S.C., Daykin, M., Soo, P.C., Wei, J.R., Luh, K.T., et al. (2002) The LuxR family protein SpnR functions as a negative regulator of N-acylhomoserine lactone-dependent quorum sensing in Serratia marcescens. Mol Microbiol 45: 16551671.
  • Hyytiainen, H., Montesano, M., and Palva, E.T. (2001) Global regulators ExpA (GacA) and KdgR modulate extracellular enzyme gene expression through the RsmA-rsmB system in Erwinia carotovora subsp. carotovora. Mol Plant Microbe Interact 14: 931938.
  • Iyer, L.M., and Aravind, L. (2002) The catalytic domains of thiamine triphosphatase and CyaB-like adenylyl cyclase define a novel superfamily of domains that bind organic phosphates. BMC Genomics 3: 33.
  • Kitten, T., Kinscherf, T.G., McEvoy, J.L., and Willis, D.K. (1998) A newly identified regulator is required for virulence and toxin production in Pseudomonas syringae. Mol Microbiol 28: 917929.
  • Kondorosi, E., Pierre, M., Cren, M., Haumann, U., Buire, M., Hoffmann, B., et al. (1991) Identification of NolR, a negative transacting factor controlling the nod regulon in Rhizobium meliloti. J Mol Biol 222: 885896.
  • Laatu, M., and Condemine, G. (2003) Rhamnogalacturonate lyase RhiE is secreted by the out system in Erwinia chrysanthemi. J Bacteriol 185: 16421649.
  • de Lorenzo, V., Herrero, M., Jakubzik, U., and Timmis, K.N. (1990) Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria. J Bacteriol 172: 65686572.
  • McGowan, S., Sebaihia, M., Jones, S., Yu, B., Bainton, N., Chan, P.F., et al. (1995) Carbapenem antibiotic production in Erwinia carotovora is regulated by CarR, a homologue of the LuxR transcriptional activator. Microbiology 141: 541550.
  • McGowan, S.J., Sebaihia, M., Porter, L.E., Stewart, G.S., Williams, P., Bycroft, B.W., and Salmond, G.P. (1996) Analysis of bacterial carbapenem antibiotic production genes reveals a novel beta-lactam biosynthesis pathway. Mol Microbiol 22: 415426.
  • McGowan, S.J., Sebaihia, M., O'Leary, S., Hardie, K.R., Williams, P., Stewart, G.S., et al. (1997) Analysis of the carbapenem gene cluster of Erwinia carotovora: definition of the antibiotic biosynthetic genes and evidence for a novel beta-lactam resistance mechanism. Mol Microbiol 26: 545556.
  • McGowan, S.J., Holden, M.T., Bycroft, B.W., and Salmond, G.P. (1999) Molecular genetics of carbapenem antibiotic biosynthesis. Antonie Van Leeuwenhoek 75: 135141.
  • McGowan, S.J., Barnard, A.M.L., Bosgelmez, G., Sebaihia, M., Simpson, N.J.L., Thomson, N.R., et al. (2005) Carbapenem antibiotic biosynthesis in Erwinia carotovora is regulated by physiological and genetic factors modulating the quorum sensing-dependent control pathway. Mol Microbiol 55: 526545.
  • Manderville, R.A. (2001) Synthesis, proton-affinity and anti-cancer properties of the prodigiosin-group natural products. Curr Med Chem Anti-Canc Agents 1: 195218.
  • Miller, J. (1972) Experiments in Molecular Genetics. New York, NY: Cold Spring Harbour Laboratory Press.
  • Minogue, T.D., Trebra, M.W., Bernhard, F., and Bodman, S.B. (2002) The autoregulatory role of EsaR, a quorum-sensing regulator in Pantoea stewartii ssp. stewartii: evidence for a repressor function. Mol Microbiol 44: 16251635.
  • Morrison, D.A. (1966) Prodigiosin synthesis in mutants of Serratia marcesens. J Bacteriol 91: 15991604.
  • Ovadis, M., Liu, X., Gavriel, S., Ismailov, Z., Chet, I., and Chernin, L. (2004) The global regulator genes from biocontrol strain Serratia plymuthica IC1270: cloning, sequencing, and functional studies. J Bacteriol 186: 49864993.
  • Parker, W.L., Rathnum, M.L., Wells, J.S., Trejo, W.H., Principe, P.A., and Sykes, R.B. (1982) SQ 27, 860, A simple carbapenem produced by species of Serratia and Erwinia. J Antibiot 35: 653660.
  • Paruchuri, D.K., and Harshey, R.M. (1987) Flagellar variation in Serratia marcescens is associated with color variation. J Bacteriol 169: 6165.
  • Perez-Tomas, R., Montaner, B., Llagostera, E., and Soto-Cerrato, V. (2003) The prodigiosins, proapoptotic drugs with anticancer properties. Biochem Pharmacol 66: 14471452.
  • Reimmann, C., Beyeler, M., Latifi, A., Winteler, H., Foglino, M., Lazdunski, A., and Haas, D. (1997) The global activator GacA of Pseudomonas aeruginosa PAO positively controls the production of the autoinducer N-butyryl-homoserine lactone and the formation of the virulence factors pyocyanin, cyanide, and lipase. Mol Microbiol 24: 309319.
  • Rjazantseva, I.N., Andreeva, I.N., and Ogorodnikova, T.I. (1994) Effect of various growth conditions on pigmentation of Serratia marcescens. Microbios 79: 155161.
  • Rosenberg, M., Blumberger, Y., Judes, H., Bar-Ness, R., Rubinstein, E., and Mazor, Y. (1986) Cell surface hydrophobicity of pigmented and nonpigmented clinical Serratia marcescens strains. Infect Immun 51: 932935.
  • Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual, 2nd edn. New York, NY: Cold Spring Harbour Laboratory Press.
  • Silverman, M.P., and Munoz, E.F. (1973) Effect of iron and salt on prodigiosin synthesis in Serratia marcescens. J Bacteriol 114: 9991006.
  • Sismeiro, O., Trotot, P., Biville, F., Vivares, C., and Danchin, A. (1998) Aeromonas hydrophila adenylyl cyclase 2: a new class of adenylyl cyclases with thermophilic properties and sequence similarities to proteins from hyperthermophilic archaebacteria. J Bacteriol 180: 33393344.
  • Slater, H., Crow, M., Everson, L., and Salmond, G.P. (2003) Phosphate availability regulates biosynthesis of two antibiotics, prodigiosin and carbapenem, in Serratia via both quorum-sensing-dependent and – independent pathways. Mol Microbiol 47: 303320.
  • Sole, M., Rius, N., and Loren, J.G. (1997) The role of pH in the ‘glucose effect’ on prodigiosin production by non-proliferating cells of Serratia marcescens. Lett Appl Microbiol 25: 8184.
  • Thomson, N.R., Cox, A., Bycroft, B.W., Stewart, G.S., Williams, P., and Salmond, G.P. (1997) The rap and hor proteins of Erwinia, Serratia and Yersinia: a novel subgroup in a growing superfamily of proteins regulating diverse physiological processes in bacterial pathogens. Mol Microbiol 26: 531544.
  • Thomson, N.R., Crow, M.A., McGowan, S.J., Cox, A., and Salmond, G.P. (2000) Biosynthesis of carbapenem antibiotic and prodigiosin pigment in Serratia is under quorum sensing control. Mol Microbiol 36: 539556.
  • Trutko, S., and Akimenko, V. (1989) The Role of Prodigiosin Biosynthesis in the Regulation of Oxidative Metabolism of the Producer Serratia marcescens. Mikrobiologiya 58: 723729.
  • Vannini, A., Volpari, C., Gargioli, C., Muraglia, E., Cortese, R., De Francesco, R., et al. (2002) The crystal structure of the quorum sensing protein TraR bound to its autoinducer and target DNA. EMBO J 21: 43934401.
  • Wasserman, H.H., Skles, R.J., Peverada, P., Shaw, C.K., Cushley, R.J., and Lipsky, C.R. (1973) Biosynthesis of prodigiosin. Incorporation patterns of C-labeled alanine, proline, glycine, and serine elucidated by fourier transform nuclear magnetic resonance. J Am Chem Soc 95: 68746875.
  • Welch, M., Todd, D.E., Whitehead, N.A., McGowan, S.J., Bycroft, B.W., and Salmond, G.P. (2000) N-acyl homoserine lactone binding to the CarR receptor determines quorum-sensing specificity in Erwinia. EMBO J 19: 631641.
  • Whitehead, N.A., Barnard, A.M., Slater, H., Simpson, N.J., and Salmond, G.P. (2001) Quorum-sensing in Gram-negative bacteria. FEMS Microbiol Rev 25: 365404.
  • Williams, S.G., and Manning, P.A. (1991) Transcription of the Vibrio cholerae haemolysin gene, hlyA, and cloning of a positive regulatory locus, hlyU. Mol Microbiol 5: 20312038.
  • Williams, R.P., Gott, C.L., and Qadri, S.M. (1971a) Induction of pigmentation in nonproliferating cells of Serratia marcescens by addition of single amino acids. J Bacteriol 106: 444448.
  • Williams, R.P., Gott, C.L., Qadri, S.M., and Scott, R.H. (1971b) Influence of temperature of incubation and type of growth medium on pigmentation in Serratia marcescens. J Bacteriol 106: 438443.
  • Williams, S.G., Attridge, S.R., and Manning, P.A. (1993) The transcriptional activator HlyU of Vibrio cholerae: nucleotide sequence and role in virulence gene expression. Mol Microbiol 9: 751760.
  • Williamson, N.R., Simonsen, H.T., Ahmed, R.A.A., Goldet, G., Slater, H., Woodley, L., et al. (2005) Biosynthesis of the red antibiotic, prodigiosin, in Serratia: identification of a novel 2-methyl-3- n-amyl-pyrrole (MAP) assembly pathway, definition of the terminal condensing enzyme, and implications for undecylprodigiosin biosynthesis in Streptomyces. Mol Microbiol 56: 971989.
  • Witney, F.R., Failla, M.L., and Weinberg, E.D. (1977) Phosphate inhibition of secondary metabolism in Serratia marcescens. Appl Environ Microbiol 33: 10421046.
  • Wu, R.Y., Zhang, R.G., Zagnitko, O., Dementieva, I., Maltzev, N., Watson, J.D., et al. (2003) Crystal structure of Enterococcus faecalis SlyA-like transcriptional factor. J Biol Chem 278: 2024020244.
  • Yanisch-Perron, C., Vieira, J., and Messing, J. (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33: 103119.
  • Zhang, R.G., Pappas, T., Brace, J.L., Miller, P.C., Oulmassov, T., Molyneaux, J.M., et al. (2002) Structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA. Nature 417: 971974.
  • Zuber, S., Carruthers, F., Keel, C., Mattart, A., Blumer, C., Pessi, G., et al. (2003) GacS sensor domains pertinent to the regulation of exoproduct formation and to the biocontrol potential of Pseudomonas fluorescens CHA0. Mol Plant Microbe Interact 16: 634644.