SEARCH

SEARCH BY CITATION

References

  • Adler, J. (1966) Chemotaxis in bacteria. Science 153: 708716.
  • Adler, J. (1973) A method for measuring chemotaxis and use of the method to determine optimum conditions for chemotaxis by Escherichia coli. J Gen Microbiol 74: 7791.
  • Adler, J. (1975) Chemotaxis in bacteria. Annu Rev Biochem 44: 341356.
  • Amin, D.N., Taylor, B.L., and Johnson, M.S. (2006) Topology and boundaries of the aerotaxis receptor Aer in the membrane of Escherichia coli. J Bacteriol 186: 894901.
  • Anraku, Y., and Gennis, R.B. (1987) The aerobic respiratory chain of Escherichia coli. Trends Biochem Sci 12: 262266.
  • Armstrong, J.B., and Adler, J. (1969) Location of genes for motility and chemotaxis on the Escherichia coli genetic map. J Bacteriol 97: 156161.
  • Berg, H.C. (2003) The rotary motor of bacterial flagella. Annu Rev Biochem 72: 1954.
  • Berg, H.C., Manson, M.D., and Conley, M.P. (1982) Dynamics and energetics of flagellar rotation in bacteria. Symp Soc Exp Biol 35: 131.
  • Bespalov, V.A., Zhulin, I.B., and Taylor, B.L. (1996) Behavioral responses of Escherichia coli to changes in redox potential. Proc Natl Acad Sci USA 93: 1008410089.
  • Bibikov, S.I., Biran, R., Rudd, K.E., and Parkinson, J.S. (1997) A signal transducer for aerotaxis in Escherichia coli. J Bacteriol 179: 40754079.
  • Bibikov, S.I., Barnes, L.A., Gitin, Y., and Parkinson, J.S. (2000) Domain organization and flavin adenine dinucleotide-binding determinants in the aerotaxis signal transducer Aer of Escherichia coli. Proc Natl Acad Sci USA 97: 58305835.
  • Bibikov, S.I., Miller, A.C., Gosink, K.K., and Parkinson, J.S. (2004) Methylation-independent aerotaxis mediated by the Escherichia coli Aer protein. J Bacteriol 186: 37303737.
  • Bogachev, A.V., Murtazina, R.A., and Skulachev, V.P. (1993) Cytochrome d induction in Escherichia coli growing under unfavorable conditions. FEBS Lett 336: 7578.
  • Bogachev, A.V., Murtazina, R.A., and Skulachev, V.P. (1996) H+/e stoichiometry for NADH dehydrogenase I and dimethyl sulfoxide reductase in anaerobically grown Escherichia coli cells. J Bacteriol 178: 62336237.
  • Bourret, R.B., and Stock, A.M. (2002) Molecular information processing: lessons from bacterial chemotaxis. J Biol Chem 277: 96259628.
  • Boyer, P.D., Chance, B., Ernster, L., Mitchell, P., Racker, E., and Slater, E.C. (1977) Oxidative phosphorylation and photophosphorylation. Annu Rev Biochem 46: 9551026.
  • Calhoun, M.W., and Gennis, R.B. (1993) Demonstration of separate genetic loci encoding distinct membrane-bound respiratory NADH dehydrogenases in Escherichia coli. J Bacteriol 175: 30133019.
  • Callahan, A.M., Frazier, B.L., and Parkinson, J.S. (1987) Chemotaxis in Escherichia coli: construction and properties of lambda tsr transducing phage. J Bacteriol 169: 12461253.
  • Calhoun, M.W., Oden, K.L., Gennis, R.B., De Mattos, M.J., and Neijssel, O.M. (1993) Energetic efficiency of Escherichia coli: effects of mutations in components of the aerobic respiratory chain. J Bacteriol 175: 30203025.
  • Canfield, D.E., and Des Marais, D.J. (1991) Aerobic sulfate reduction in microbial mats. Science 251: 14711473.
  • Castor, L.N., and Chance, B. (1959) Photochemical determinations of the oxidases of bacteria. J Biol Chem 234: 15871592.
  • Davis, R.W., Botstein, D., and Roth, J.R. (1980) Advanced Bacterial Genetics. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
  • Donaghay, P.L., Rimes, H.M., and Sieburth, J.McN. (1992) Simultaneous sampling of fine scale biological, chemical and physical structure in stratified waters. Arch Hydrobiol Beih Ergebn Limnol 36: 97108.
  • Edwards, J.C. (2005) Oxygen sensing by the Aer and Tsr receptors of Escherichia coli. PhD dissertation. Loma Linda University: Loma Linda, CA, p. 214.
  • Falk-Krzesinski, H.J., and Wolfe, A.J. (1998) Genetic analysis of the nuo locus, which encodes the proton-translocating NADH dehydrogenase in Escherichia coli. J Bacteriol 180: 11741184.
  • Friedrich, T., and Scheide, D. (2000) The respiratory complex I of bacteria, archaea and eukarya and its module common with membrane-bound multisubunit hydrogenases. FEBS Lett 479: 15.
  • Galkin, A.S., Grivennikova, V.G., and Vinogradov, A.D. (1999) H+/2e stoichiometry in NADH-quinone reductase reactions catalyzed by bovine heart submitochondrial particles. FEBS Lett 451: 157161.
  • Gennis, R.B. (1998) How does cytochrome oxidase pump protons? Proc Natl Acad Sci USA 95: 1274712749.
  • Gennis, R.B., and Stewart, V. (1996) Respiration. In Escherichia Coli and Salmonella: Cellular and Molecular Biology, Vol. 1. NeidhardtF.C. (ed.). Washington, DC: American Society for Microbiology Press, pp. 217261.
  • Glagolev, A.N., and Skulachev, V.P. (1978) The proton pump is a molecular engine of motile bacteria. Nature 272: 280282.
  • Green, J., and Guest, J.R. (1994) Regulation of transcription at the ndh promoter of Escherichia coli by FNR and novel factors. Mol Microbiol 12: 433444.
  • Greer-Phillips, S.E., Alexandre, G., Taylor, B.L., and Zhulin, I.B. (2003) Aer and Tsr guide Escherichia coli in spatial gradients of oxidizable substrates. Microbiology 149: 26612667.
  • Harold, F.M., and Maloney, P.C. (1996) Energy transduction by ion currents. In Escherichia Coli and Salmonella: Cellular and Molecular Biology, Vol. 1. Neidhardt, F.C. (ed.). Washington, DC: American Society for Microbiology Press, pp. 283306.
  • Hayashi, M., Miyoshi, T., Takashina, S., and Unemoto, T. (1989) Purification of NADH-ferricyanide dehydrogenase and NADH-quinone reductase from Escherichia coli membranes and their roles in the respiratory chain. Biochim Biophys Acta 977: 6269.
  • Hedblom, M.L., and Adler, J. (1980) Genetic and biochemical properties of Escherichia coli mutants with defects in serine chemotaxis. J Bacteriol 144: 10481060.
  • Hedblom, M.L., and Adler, J. (1983) Chemotactic response of Escherichia coli to chemically synthesized amino acids. J Bacteriol 155: 14631466.
  • Ingledew, W.J., and Poole, R.K. (1984) The respiratory chains of Escherichia coli. Microbiol Rev 48: 222271.
  • Jones, C.W., Brice, J.M., Downs, A.J., and Drozd, J.W. (1975) Bacterial respiration-linked proton translocation and its relationship to respiratory-chain composition. Eur J Biochem 52: 265271.
  • Jorgensen, B.B. (1982) Ecology of the bacteria of the sulphur cycle with special reference to anoxic–oxic interface environments. Philos Trans R Soc Lond B Biol Sci 298: 543561.
  • Kasahara, M., Makino, K., Amemura, M., Nakata, A., and Shinagawa, H. (1991) Dual regulation of the ugp operon by phosphate and carbon starvation at two interspaced promoters. J Bacteriol 173: 549558.
  • Kehry, M.R., Bond, M.W., Hunkapiller, M.W., and Dahlquist, F.W. (1983) Enzymatic deamidation of methyl-accepting chemotaxis proteins in Escherichia coli catalyzed by the cheB gene product. Proc Natl Acad Sci USA 80: 35993603.
  • Khan, S., and Macnab, R.M. (1980) Proton chemical potential, proton electrical potential and bacterial motility. J Mol Biol 138: 599614.
  • Lai, W.C., Peach, M.L., Lybrand, T.P., and Hazelbauer, G.L. (2006) Diagnostic cross-linking of paired cysteine pairs demonstrates homologous structures for two chemoreceptor domains with low sequence identity. Protein Sci 15: 94101.
  • Laszlo, D.J., and Taylor, B.L. (1981) Aerotaxis in Salmonella typhimurium: role of electron transport. J Bacteriol 145: 9901001.
  • Laszlo, D.J., Fandrich, B.L., Sivaram, A., Chance, B., and Taylor, B.L. (1984a) Cytochrome o as a terminal oxidase and receptor for aerotaxis in Salmonella typhimurium. J Bacteriol 159: 663667.
  • Laszlo, D.J., Niwano, M., Goral, W.W., and Taylor, B.L. (1984b) Bacillus cereus electron transport and proton motive force during aerotaxis. J Bacteriol 159: 820824.
  • Lee, L., Mizuno, T., and Imae, Y. (1988) Thermosensing properties of Escherichia coli tsr mutants defective in serine chemoreception. J Bacteriol 170: 47694774.
  • Link, A.J., Phillips, D., and Church, G.M. (1997) Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization. J Bacteriol 179: 62286237.
  • Ma, Q., Johnson, M.S., and Taylor, B.L. (2005) Genetic analysis of the HAMP domain of the Aer aerotaxis sensor localizes flavin adenine dinucleotide-binding determinants to the AS-2 helix. J Bacteriol 187: 193201.
  • Manson, M.D., Tedesco, P., Berg, H.C., Harold, F.M., and Van der Drift, C. (1977) A protonmotive force drives bacterial flagella. Proc Natl Acad Sci USA 74: 30603064.
  • Marschall, C., Labrousse, V., Kreimer, M., Weichart, D., Kolb, A., and Hengge-Aronis, R. (1998) Molecular analysis of the regulation of csiD, a carbon starvation-inducible gene in Escherichia coli that is exclusively dependent on σS and requires activation by cAMP-CRP. J Mol Biol 276: 339353.
  • Matin, A. (1991) The molecular basis of carbon-starvation-induced general resistance in Escherichia coli. Mol Microbiol 5: 310.
  • Matsushita, K., Ohnishi, T., and Kaback, H.R. (1987) NADH-ubiquinone oxidoreductases of the Escherichia coli aerobic respiratory chain. Biochemistry 26: 77327737.
  • Matsuura, S., Shioi, J.I., Imae, Y., and Iida, S. (1979) Characterization of the Bacillus subtilis motile system driven by an artificially created proton motive force. J Bacteriol 140: 2836.
  • Miller, J.H. (1992) A Short Course in Bacterial Genetics. Plainview, NY: Cold Spring Harbor Laboratory Press.
  • Miller, M.J., and Gennis, R.B. (1983) The purification and characterization of the cytochrome d terminal oxidase complex of the Escherichia coli aerobic respiratory chain. J Biol Chem 258: 91599165.
  • Mitchell, P. (1961) Coupling of phosphorylation to electron and hydrogen transfer by a chemi-osmotic type of mechanism. Nature 191: 144148.
  • Nowlin, D.M., Bollinger, J., and Hazelbauer, G.L. (1987) Sites of covalent modification in Trg, a sensory transducer of Escherichia coli. J Biol Chem 262: 60396045.
  • Oden, K.L., DeVeaux, L.C., Vibat, C.R., Cronan, J.E., Jr And Gennis, R.B. (1990) Genomic replacement in Escherichia coli K-12 using covalently closed circular plasmid DNA. Gene 96: 2936.
  • Parkinson, J.S., and Houts, S.E. (1982) Isolation and behavior of Escherichia coli deletion mutants lacking chemotaxis functions. J Bacteriol 151: 106113.
  • Poole, R.K., and Haddock, B.A. (1975) Effects of sulphate-limited growth in continuous culture on the electron-transport chain and energy conservation in Escherichia coli K12. Biochem J 152: 537546.
  • Ravid, S., and Eisenbach, M. (1984) Minimal requirements for rotation of bacterial flagella. J Bacteriol 158: 12081210.
  • Rebbapragada, A., Johnson, M.S., Harding, G.P., Zuccarelli, A.J., Fletcher, H.M., Zhulin, I.B., and Taylor, B.L. (1997) The Aer protein and the serine chemoreceptor Tsr independently sense intracellular energy levels and transduce oxygen, redox, and energy signals for Escherichia coli behavior. Proc Natl Acad Sci USA 94: 1054110546.
  • Reenstra, W.W., Patel, L., Rottenberg, H., and Kaback, H.R. (1980) Electrochemical proton gradient in inverted membrane vesicles from Escherichia coli. Biochemistry 19: 19.
  • Repik, A., Rebbapragada, A., Johnson, M.S., Haznedar, J.O., Zhulin, I.B., and Taylor, B.L. (2000) PAS domain residues involved in signal transduction by the Aer redox sensor of Escherichia coli. Mol Microbiol 36: 806816.
  • Rice, C.W., and Hempfling, W.P. (1978) Oxygen-limited continuous culture and respiratory energy conservation in Escherichia coli. J Bacteriol 134: 115124.
  • Rich, P.R., Junemann, S., and Meunier, B. (1998) Protonmotive mechanism of heme-copper oxidases. J Bioenerg Biomembr 30: 131138.
  • Robinson, J., and Cooper, J.M. (1970) Method of determining oxygen concentrations in biological media, suitable for calibration of the oxygen electrode. Anal Biochem 33: 390399.
  • Salmon, K., Hung, S.P., Mekjian, K., Baldi, P., Hatfield, G.W., and Gunsalus, R.P. (2003) Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR. J Biol Chem 278: 2983729855.
  • Schultz, J.E., and Matin, A. (1991) Molecular and functional characterization of a carbon starvation gene of Escherichia coli. J Mol Biol 218: 129140.
  • Shioi, J.I., Matsuura, S., and Imae, Y. (1980) Quantitative measurements of proton motive force and motility in Bacillus subtilis. J Bacteriol 144: 891897.
  • Shioi, J., Tribhuwan, R.C., Berg, S.T., and Taylor, B.L. (1988) Signal transduction in chemotaxis to oxygen in Escherichia coli and Salmonella typhimurium. J Bacteriol 170: 55075511.
  • Slonczewski, J.L., Rosen, B.P., Alger, J.R., and Macnab, R.M. (1981) pH homeostasis in Escherichia coli: measurement by 31P nuclear magnetic resonance of methylphosphonate and phosphate. Proc Natl Acad Sci USA 78: 62716275.
  • Slonczewski, J.L., Macnab, R.M., Alger, J.R., and Castle, A.M. (1982) Effects of pH and repellent tactic stimuli on protein methylation levels in Escherichia coli. J Bacteriol 152: 384399.
  • Springer, M.S., Goy, M.F., and Adler, J. (1979) Protein methylation in behavioural control mechanisms and in signal transduction. Nature 280: 279284.
  • Taylor, B.L. (1983) Role of proton motive force in sensory transduction in bacteria. Annu Rev Microbiol 37: 551573.
  • Taylor, B.L., and Zhulin, I.B. (1999) PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol Mol Biol Rev 63: 479506.
  • Taylor, B.L., Miller, J.B., Warrick, H.M., and Koshland, D.E., Jr. (1979) Electron acceptor taxis and blue light effect on bacterial chemotaxis. J Bacteriol 140: 567573.
  • Taylor, B.L., Rebbapragada, A., and Johnson, M.S. (2001) The FAD-PAS domain as a sensor for behavioral responses in Escherichia coli. Antioxid Redox Signal 3: 867879.
  • Taylor, B.L., Johnson, M.S., and Watts, K.J. (2003) Signal transduction in prokaryotic PAS domains. In PAS Proteins: Regulators and Sensors of Development and Physiology. Crews, S.T. (ed.). Norwell, MA: Kluwer Academic Publishers, pp. 1550.
  • Terwilliger, T.C., Wang, J.Y., and Koshland, D.E., Jr. (1986) Surface structure recognized for covalent modification of the aspartate receptor in chemotaxis. Proc Natl Acad Sci USA 83: 67076710.
  • Tran, Q.H., and Unden, G. (1998) Changes in the proton potential and the cellular energetics of Escherichia coli during growth by aerobic and anaerobic respiration or by fermentation. Eur J Biochem 251: 538543.
  • Trumpower, B.L., and Gennis, R.B. (1994) Energy transduction by cytochrome complexes in mitochondrial and bacterial respiration: the enzymology of coupling electron transfer reactions to transmembrane proton translocation. Annu Rev Biochem 63: 675716.
  • Tseng, C.P., Albrecht, J., and Gunsalus, R.P. (1996) Effect of microaerophilic cell growth conditions on expression of the aerobic (cyoABCDE and cydAB) and anaerobic (narGHJI, frdABCD, and dmsABC) respiratory pathway genes in Escherichia coli. J Bacteriol 178: 10941098.
  • Umemura, T., Matsumoto, Y., Ohnishi, K., Homma, M., and Kawagishi, I. (2002) Sensing of cytoplasmic pH by bacterial chemoreceptors involves the linker region that connects the membrane-spanning and the signal-modulating helices. J Biol Chem 277: 15931598.
  • Unden, G., and Bongaerts, J. (1997) Alternative respiratory pathways of Escherichia coli: energetics and transcriptional regulation in response to electron acceptors. Biochim Biophys Acta 1320: 217234.
  • Unden, G., and Schirawski, J. (1997) The oxygen-responsive transcriptional regulator FNR of Escherichia coli: the search for signals and reactions. Mol Microbiol 25: 205210.
  • Wikstrom, M. (1984) Two protons are pumped from the mitochondrial matrix per electron transferred between NADH and ubiquinone. FEBS Lett 169: 300304.
  • Wikstrom, M. (1989) Identification of the electron transfers in cytochrome oxidase that are coupled to proton-pumping. Nature 338: 776778.
  • Wolfe, A.J., and Berg, H.C. (1989) Migration of bacteria in semisolid agar. Proc Natl Acad Sci USA 86: 69736977.
  • Yeh, J.I., Biemann, H.P., Prive, G.G., Pandit, J., Koshland, D.E., Jr And Kim, S.H. (1996) High-resolution structures of the ligand binding domain of the wild-type bacterial aspartate receptor. J Mol Biol 262: 186201.
  • Yi, T.M., Huang, Y., Simon, M.I., and Doyle, J. (2000) Robust perfect adaptation in bacterial chemotaxis through integral feedback control. Proc Natl Acad Sci USA 97: 46494653.
  • Yu, H.S., Saw, J.H., Hou, S., Larsen, R.W., Watts, K.J., Johnson, M.S., et al. (2002) Aerotactic responses in bacteria to photoreleased oxygen. FEMS Microbiol Lett 217: 237242.
  • Zhulin, I.B., Bespalov, V.A., Johnson, M.S., and Taylor, B.L. (1996) Oxygen taxis and proton motive force in Azospirillum brasilense. J Bacteriol 178: 51995204.
  • Zhulin, I.B., Taylor, B.L., and Dixon, R. (1997a) PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem Sci 22: 331333.
  • Zhulin, I.B., Rowsell, E.H., Johnson, M.S., and Taylor, B.L. (1997b) Glycerol elicits energy taxis of Escherichia coli and Salmonella typhimurium. J Bacteriol 179: 31963201.