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References

  • Aiyar, S.E., McLeod, S.M., Ross, W., Hirvonen, C.A., Thomas, M.S., Johnson, R.C., and Gourse, R.L. (2002) Architecture of Fis-activated transcription complexes at the Escherichia coli rrnB P1 and rrnE P1 promoters. J Mol Biol 316: 501516.
  • Auner, H., Buckle, M., Deufel, A., Kutateladze, T., Lazarus, L., Mavathur, R., et al. (2003) Mechanism of transcriptional activation by FIS: role of core promoter structure and DNA topology. J Mol Biol 331: 331344.
  • Azam, T.A., and Ishihama, A. (1999) Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity. J Biol Chem 274: 3310533113.
  • Balke, V.L., and Gralla, J.D. (1987) Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli. J Bacteriol 169: 44994506.
  • Ball, C.A., Osuna, R., Ferguson, K.C., and Johnson, R.C. (1992) Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli. J Bacteriol 174: 80438056.
  • Brandi, A., Spurio, R., Gualerzi, C.O., and Pon, C.L. (1999) Massive presence of the Escherichia coli ‘major cold-shock protein’CspA under non-stress conditions. EMBO J 18: 16531659.
  • Browning, D.F., Cole, J.A., and Busby, S.J. (2000) Suppression of FNR-dependent transcription activation at the Escherichia coli nir promoter by Fis, IHF and H-NS: modulation of transcription initiation by a complex nucleo-protein assembly. Mol Microbiol 37: 12581269.
  • Browning, D.F., Beatty, C.M., Wolfe, A.J., Cole, J.A., and Busby, S.J. (2002) Independent regulation of the divergent Escherichia coli nrfA and acsP1 promoters by a nucleoprotein assembly at a shared regulatory region. Mol Microbiol 43: 687701.
  • Browning, D.F., Cole, J.A., and Busby, S.J. (2004) Transcription activation by remodelling of a nucleoprotein assembly: the role of NarL at the FNR-dependent Escherichia coli nir promoter. Mol Microbiol 53: 203215.
  • Browning, D.F., Grainger, D.C., Beatty, C.M., Wolfe, A.J., Cole, J.A., and Busby, S.J. (2005) Integration of three signals at the Escherichia coli nrf promoter: a role for Fis protein in catabolite repression. Mol Microbiol 57: 496510.
  • Crozat, E., Philippe, N., Lenski, R.E., Geiselmann, J., and Schneider, D. (2005) Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection. Genetics 169: 523532.
  • Drlica, K. (1992) Control of bacterial DNA supercoiling. Mol Microbiol 6: 425433.
  • Falconi, M., Brandi, A., La Teana, A., Gualerzi, C.O., and Pon, C.L. (1996) Antagonistic involvement of FIS and H-NS proteins in the transcriptional control of hns expression. Mol Microbiol 19: 965975.
  • Falconi, M., Prosseda, G., Giangrossi, M., Beghetto, E., and Colonna, B. (2001) Involvement of FIS in the H-NS-mediated regulation of virF gene of Shigella and enteroinvasive Escherichia coli. Mol Microbiol 42: 439452.
  • Filutowicz, M., Ross, W., Wild, J., and Gourse, R.L. (1992) Involvement of Fis protein in replication of the Escherichia coli chromosome. J Bacteriol 174: 398407.
  • Finkel, S.E., and Johnson, R.C. (1992) The Fis protein: it's not just for DNA inversion anymore. Mol Microbiol 6: 32573265.
  • Gille, H., Egan, J.B., Roth, A., and Messer, W. (1991) The FIS protein binds and bends the origin of chromosomal DNA replication, oriC, of Escherichia coli. Nucleic Acids Res 19: 41674172.
  • Gonzalez-Gil, G., Bringmann, P., and Kahmann, R. (1996) FIS is a regulator of metabolism in Escherichia coli. Mol Microbiol 22: 2129.
  • Haffter, P., and Bickle, T.A. (1987) Purification and DNA-binding properties of FIS and Cin, two proteins required for the bacteriophage P1 site-specific recombination system. Cin J Mol Biol 198: 579587.
  • Hill, A.V. (1910) The possible effects of the aggregation of the molecules of haemoglobin on its dissociation curves. J Physiol 40: ivvii.
  • Hirvonen, C.A., Ross, W., Wozniak, C.E., Marasco, E., Anthony, J.R., Aiyar, S.E., et al. (2001) Contributions of UP elements and the transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli. J Bacteriol 183: 63056314.
  • Johnson, R.C., Bruist, M.F., and Simon, M.I. (1986) Host protein requirements for in vitro site-specific DNA inversion. Cell 46: 531539.
  • Kim, B.H., Kim, H.G., Bae, G.I., Bang, I.S., Bang, S.H., Choi, J.H., and Park, Y.K. (2004) Expression of cspH upon nutrient up-shift in Salmonella enterica serovar Typhimurium. Arch Microbiol 182: 3743.
  • Koch, C., and Kahmann, R. (1986) Purification and properties of the Escherichia coli host factor required for inversion of the G segment in bacteriophage Mu. J Biol Chem 261: 1567315678.
  • Lesley, S.A., Jovanovich, S.B., Tse-Dinh, Y.C., and Burgess, R.R. (1990) Identification of a heat shock promoter in the topA gene of Escherichia coli. J Bacteriol 172: 68716874.
  • Lutz, R., and Bujard, H. (1997) Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. Nucleic Acids Res 25: 12031210.
  • Mallik, P., Pratt, T.S., Beach, M.B., Bradley, M.D., Undamatla, J., and Osuna, R. (2004) Growth phase-dependent regulation and stringent control of fis are conserved processes in enteric bacteria and involve a single promoter (fis P) in Escherichia coli. J Bacteriol 186: 122135.
  • Muskhelishvili, G., Buckle, M., Heumann, H., Kahmann, R., and Travers, A.A. (1997) FIS activates sequential steps during transcription initiation at a stable RNA promoter. EMBO J 16: 36553665.
  • Nasser, W., Schneider, R., Travers, A., and Muskhelishvili, G. (2001) CRP modulates fis transcription by alternate formation of activating and repressing nucleoprotein complexes. J Biol Chem 276: 1787817886.
  • Nilsson, L., Verbeek, H., Hoffmann, U., Haupt, M., and Bosch, L. (1992) Inactivation of the fis gene leads to reduced growth rate. FEMS Microbiol Lett 78: 8588.
  • Ninnemann, O., Koch, C., and Kahmann, R. (1992) The E. coli fis promoter is subject to stringent control and autoregulation. EMBO J 11: 10751083.
  • Owens, R.M., Pritchard, G., Skipp, P., Hodey, M., Connell, S.R., Nierhaus, K.H., and O'Connor, C.D. (2004) A dedicated translation factor controls the synthesis of the global regulator Fis. EMBO J 23: 33753385.
  • Pemberton, I.K., Muskhelishvili, G., Travers, A.A., and Buckle, M. (2002) FIS modulates the kinetics of successive interactions of RNA polymerase with the core and upstream regions of the tyrT promoter. J Mol Biol 318: 651663.
  • Pratt, T.S., Steiner, T., Feldman, L.S., Walker, K.A., and Osuna, R. (1997) Deletion analysis of the fis promoter region in Escherichia coli: antagonistic effects of integration host factor and Fis. J Bacteriol 179: 63676377.
  • Qi, H., Menzel, R., and Tse-Dinh, Y.C. (1997) Regulation of Escherichia coli topA gene transcription: involvement of a sigmaS-dependent promoter. J Mol Biol 267: 481489.
  • Rochman, M., Blot, N., Dyachenko, M., Glaser, G., Travers, A., and Muskhelishvili, G. (2004) Buffering of stable RNA promoter activity against DNA relaxation requires a far upstream sequence. Mol Microbiol 53: 143152.
  • Ross, W., Thompson, J.F., Newlands, J.T., and Gourse, R.L. (1990) E. coli Fis protein activates ribosomal RNA transcription in vitro and in vivo. EMBO J 9: 37333742.
  • Ross, W., Salomon, J., Holmes, W.M., and Gourse, R.L. (1999) Activation of Escherichia coli leuV transcription by FIS. J Bacteriol 181: 38643868.
  • Sasse-Dwight, S., and Gralla, J.D. (1991) Footprinting protein-DNA complexes in vivo. Methods Enzymol 208: 146168.
  • Schlosser-Silverman, E., Elgrably-Weiss, M., Rosenshine, I., Kohen, R., and Altuvia, S. (2000) Characterization of Escherichia coli DNA lesions generated within J774 macrophages. J Bacteriol 182: 52255230.
  • Schneider, D.A., Ross, W., and Gourse, R.L. (2003) Control of rRNA expression in Escherichia coli. Curr Opin Microbiol 6: 151156.
  • Schneider, R., Travers, A., and Muskhelishvili, G. (1997) FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coli. Mol Microbiol 26: 519530.
  • Schneider, R., Travers, A., Kutateladze, T., and Muskhelishvili, G. (1999) A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli. Mol Microbiol 34: 953964.
  • Schneider, R., Travers, A., and Muskhelishvili, G. (2000) The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA. Mol Microbiol 38: 167175.
  • Schneider, R., Lurz, R., Luder, G., Tolksdorf, C., Travers, A., and Muskhelishvili, G. (2001) An architectural role of the Escherichia coli chromatin protein FIS in organising DNA. Nucleic Acids Res 29: 51075114.
  • Thompson, J.F., Moitoso de Vargas, L., Koch, C., Kahmann, R., and Landy, A. (1987) Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway. Cell 50: 901908.
  • Tse-Dinh, Y.C., and Beran, R.K. (1988) Multiple promoters for transcription of the Escherichia coli DNA topoisomerase I gene and their regulation by DNA supercoiling. J Mol Biol 202: 735742.
  • Walker, K.A., and Osuna, R. (2002) Factors affecting start site selection at the Escherichia coli fis promoter. J Bacteriol 184: 47834791.
  • Walker, K.A., Mallik, P., Pratt, T.S., and Osuna, R. (2004) The Escherichia coli Fis promoter is regulated by changes in the levels of its transcription initiation nucleotide CTP. J Biol Chem 279: 5081850828.
  • Weinstein-Fischer, D., Elgrably-Weiss, M., and Altuvia, S. (2000) Escherichia coli response to hydrogen peroxide: a role for DNA supercoiling, topoisomerase I and Fis. Mol Microbiol 35: 14131420.
  • Wilson, R.L., Libby, S.J., Freet, A.M., Boddicker, J.D., Fahlen, T.F., and Jones, B.D. (2001) Fis, a DNA nucleoid-associated protein, is involved in Salmonella typhimurium SPI-1 invasion gene expression. Mol Microbiol 39: 7988.