SEARCH

SEARCH BY CITATION

References

  • Aizawa, S.-I., Zhulin, I.B., Márquez-Magaña, L.M., and Ordal, G.W. (2002) Chemotaxis and motility. In Bacillus subtilis and Its Closest Relatives: From Genes to Cells. Sonenshein, A.L., Hoch, J.A., and Losick, R. (eds). Washington, DC: American Society for Microbiology Press, pp. 437452.
  • Babitzke, P., and Romeo, T. (2007) CsrB sRNA family: sequestration of RNA-binding regulatory proteins. Curr Opin Microbiol 10: 156163.
  • Baker, C.S., Morozov, I., Suzuki, K., Romeo, T., and Babitzke, P. (2002) CsrA regulates glycogen biosynthesis by preventing translation of glgC in Escherichia coli. Mol Microbiol 44: 15991610.
  • Bergara, F., Ibarra, C., Iwamasa, J., Patarroyo, J.C., Aguilera, R., and Márquez-Magaña, L.M. (2003) CodY is a nutritional sensor of flagellar gene expression in Bacillus subtilis. J Bacteriol 185: 31183126.
  • Chambliss, G.H., Henkin, T.M., and Leventhal, J.M. (1983) Bacterial in vitro protein-synthesizing systems. Methods Enzymol 101: 598605.
  • Chatterjee, A., Cui, Y., Liu, Y., Dumenyo, C.K., and Chatterjee, A.K. (1995) Inactivation of rsmA leads to overproduction of extracellular pectinases, cellulases, and proteases in Erwinia carotovora subsp. carotovora in the absence of the starvation/cell density-sensing signal, N-(3-oxohexanoyl)-l-homoserine lactone. Appl Environ Microbiol 61: 19591967.
  • Chatterjee, A., Cui, Y., and Chatterjee, A.K. (2002) RsmA and the quorum-sensing signal, N-[3-oxohexanoyl]-l-homoserine lactone, control the levels of rsmB RNA in Erwinia carotovora subsp. carotovora by affecting its stability. J Bacteriol 184: 40894095.
  • Du, H., and Babitzke, P. (1998) trp-RNA binding attenuation protein-mediated long-distance RNA refolding regulates translation of trpE in Bacillus subtilis. J Biol Chem 273: 2049420503.
  • Dubey, A.K., Baker, C.S., Suzuki, K., Jones, A.D., Pandit, P., Romeo, T., and Babitzke, P. (2003) CsrA regulates translation of the Escherichia coli carbon starvation gene, cstA, by blocking ribosome access to the cstA transcript. J Bacteriol 185: 44504460.
  • Dubey, A.K., Baker, C.S., Romeo, T., and Babitzke, P. (2005) RNA sequence and secondary structure participate in high-affinity CsrA–RNA interaction. RNA 11: 15791587.
  • Fortune, D.R., Suyemoto, M., and Altier, C. (2006) Identification of CsrC and characterization of its role in epithelial cell invasion in Salmonella enterica serovar typhimurium. Infect Immun 74: 331339.
  • Fredrick, K., Caramori, T., Chen, Y.-F., Galizzi, A., and Helmann, J.D. (1995) Promoter architecture in the flagellar regulon of Bacillus subtilis: high-level expression of flagellin by the σD RNA polymerase requires an upstream promoter element. Proc Natl Acad Sci USA 92: 25822586.
  • Gutiérrez, P., Li, Y., Osborne, M.J., Pomerantseva, E., Liu, Q., and Gehring, K. (2005) Solution structure of the carbon storage regulator protein CsrA from Escherichia coli. J Bacteriol 187: 34963501.
  • Hartz, D., McPheeters, D.S., Traut, R., and Gold, L. (1988) Extension inhibition analysis of translation initiation complexes. Methods Enzymol 164: 419425.
  • Heeb, S., Blumer, C., and Haas, D. (2002) Regulatory RNA as mediator in GacA/RsmA-dependent global control of exoproduct formation in Pseudomonas fluorescens CHA0. J Bacteriol 184: 10461056.
  • Helmann, J.D. (1999) Anti-sigma factors. Curr Opin Microbiol 2: 135141.
  • Helmann, J.D., Marquez, L.M., and Chamberlin, M.J. (1988) Cloning, sequencing, and disruption of the Bacillus subtilis sigma 28 gene. J Bacteriol 170: 15681574.
  • Heurlier, K., Williams, F., Heeb, S., Dormond, C., Pessi, G., Singer, D., et al. (2004) Positive control of swarming, rhamnolipid synthesis, and lipase production by the posttranscriptional RsmA/RsmZ system in Pseudomonas aeruginosa PAO1. J Bacteriol 186: 29362945.
  • Hughes, K.T., and Mathee, K. (1998) The anti-sigma factors. Annu Rev Microbiol 52: 231286.
  • Jackson, D.W., Suzuki, K., Oakford, L., Simecka, J.W., Hart, M.E., and Romeo, T. (2002) Biofilm formation and dispersal under the influence of the global regulator CsrA of Escherichia coli. J Bacteriol 184: 290301.
  • Kay, E., Dubuis, C., and Haas, D. (2005) Three small RNAs jointly ensure secondary metabolism and biocontrol in Pseudomonas fluorescens CHA0. Proc Natl Acad Sci USA 102: 1713617141.
  • Kay, E., Humair, B., Dénervaud, V., Riedel, K., Spahr, S., Eberl, L., et al. (2006) Two GacA-dependent small RNAs modulate the quorum-sensing response in Pseudomonas aeruginosa. J Bacteriol 188: 60266033.
  • Kulkarni, P.R., Cui, X., Williams, J.W., Stevens, A.M., and Kulkarni, R.V. (2006) Prediction of CsrA-regulating small RNAs in bacteria and their experimental verification in Vibrio fischeri. Nucleic Acids Res 34: 33613369.
  • Lawhon, S.D., Frye, J.G., Suyemoto, M., Porwollik, S., McClelland, M., and Altier, C. (2003) Global regulation by CsrA in Salmonella typhimurium. Mol Microbiol 48: 16331645.
  • Lenz, D.H., Miller, M.B., Zhu, J., Kulkarni, R.V., and Bassler, B.L. (2005) CsrA and three redundant small RNAs regulate quorum sensing in Vibrio cholerae. Mol Microbiol 58: 11861202.
  • Liu, M.Y., Gui, G., Wei, B., Preston, J.F., III, Oakford, L., Yuksel, U., et al. (1997) The RNA molecule CsrB binds to the global regulatory protein CsrA and antagonizes its activity in Escherichia coli. J Biol Chem 272: 1750217510.
  • Liu, Y., Cui, Y., Mukherjee, A., and Chatterjee, A.K. (1998) Characterization of a novel RNA regulator of Erwinia carotovora ssp. carotovora that controls production of extracellular enzymes and secondary metabolites. Mol Microbiol 29: 219234.
  • Macnab, R.M. (1996) Flagella and motility. In: Escherichia coli and Salmonella: Cellular and Molecular Biology. Neidhardt, F.C., Curtis, R., III, Ingraham, J.L., Lin, E.C.C., Low, K. B., Magasanik, B., et al. (eds). Washington, DC: American Society for Microbiology Press, pp. 123145.
  • Mercante, J., Suzuki, K., Cheng, X., Babitzke, P., and Romeo, T. (2006) Comprehensive alanine-scanning mutagenesis of Escherichia coli CsrA defines two subdomains of critical functional importance. J Biol Chem 281: 3183231842.
  • Merino, E., Babitzke, P., and Yanofsky, C. (1995) trp RNA-binding attenuation protein (TRAP)–trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon. J Bacteriol 177: 63626370.
  • Mirel, D.B., and Chamberlin, M.J. (1989) The Bacillus subtilis flagellin gene (hag) is transcribed by the sigma 28 form of RNA polymerase. J Bacteriol 171: 30953101.
  • Mirel, D.B., Lauer, P., and Chamberlin, M.J. (1994) Identification of flagellar synthesis regulatory and structural genes in a sigma D-dependent operon of Bacillus subtilis. J Bacteriol 176: 44924500.
  • Nishihara, T., and Freese, E. (1975) Motility of Bacillus subtilis during growth and sporulation. J Bacteriol 123: 366371.
  • Phillips, Z.E., and Strauch, M.A. (2002) Bacillus subtilis sporulation and stationary phase gene expression. Cell Mol Life Sci 59: 392402.
  • Platt, T., Müller-Hill, B., and Miller, J.H. (1972) Assay of β-galactosidase. In Experiments in Molecular Genetics. Miller, J.H. (ed.). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory, pp. 352355.
  • Reimmann, C., Valverde, C., Kay, E., and Haas, D. (2005) Posttranscriptional repression of GacS/GacA-controlled genes by the RNA-binding protein RsmE acting together with RsmA in the biocontrol strain Pseudomonas fluorescens CHA0. J Bacteriol 187: 276285.
  • Romeo, T. (1998) Global regulation by the small RNA-binding protein CsrA and the non-coding RNA molecule CsrB. Mol Microbiol 29: 13211330.
  • Schaak, J., Yakhnin, H., Bevilacqua, P.C., and Babitzke, P. (2003) A Mg2+-dependent RNA tertiary structure forms in the Bacillus subtilis trp operon leader transcript and appears to interfere with trpE translation control by inhibiting TRAP binding. J Mol Biol 332: 555574.
  • Sullivan, M.A., Yasbin, R.E., and Young, F.E. (1984) New shuttle vectors for Bacillus subtilis and Escherichia coli which allow rapid detection of inserted fragments. Gene 29: 2126.
  • Titz, B., Rajagopala, S.V., Ester, C., Häuser, R., and Uetz, P. (2006) Novel conserved assembly factor of the bacterial flagellum. J Bacteriol 188: 77007706.
  • Wang, X., Dubey, A.K., Suzuki, K., Baker, C.S., Babitzke, P., and Romeo, T. (2005) CsrA post-transcriptionally represses pgaABCD, responsible for synthesis of a biofilm polysaccharide adhesin of Escherichia coli. Mol Microbiol 56: 16481663.
  • Wei, B., Shin, S., LaPorte, D., Wolfe, A.J., and Romeo, T. (2000) Global regulatory mutations in csrA and rpoS cause severe central carbon stress in Escherichia coli in the presence of acetate. J Bacteriol 182: 16321640.
  • Wei, B.L., Brun-Zinkernagel, A.-M., Simecka, J.W., Prüß, B.M., Babitzke, P., and Romeo, T. (2001) Positive regulation of motility and flhDC expression by the RNA-binding protein CsrA of Escherichia coli. Mol Microbiol 40: 245256.
  • Weilbacher, T., Suzuki, K., Dubey, A.K., Wang, X., Gudapaty, S., Morozov, I., et al. (2003) A novel sRNA component of the carbon storage regulatory system of Escherichia coli. Mol Microbiol 48: 657670.
  • White, D., Hart, M.E., and Romeo, T. (1996) Phylogenetic distribution of the global regulatory gene csrA among eubacteria. Gene 182: 221223.
  • Yakhnin, A.V., and Babitzke, P. (2002) NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism in vitro. Proc Natl Acad Sci USA 99: 1106711072.
  • Yakhnin, A.V., Trimble, J.J., Chiaro, C.R., and Babitzke, P. (2000) Effects of mutations in the 1-tryptophan binding pocket of the trp RNA-binding attenuation protein of Bacillus subtilis. J Biol Chem 275: 45194524.
  • Yakhnin, H., Zhang, H., Yakhnin, A.V., and Babitzke, P. (2004) The trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis regulates translation of the tryptophan transport gene, trpP (yhaG), by blocking ribosome binding. J Bacteriol 186: 278286.
  • Yakhnin, H., Yakhnin, A.V., and Babitzke, P. (2006a) The trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis regulates translation initiation of ycbK, a gene encoding a putative efflux protein, by blocking ribosome binding. Mol Microbiol 61: 12521266.
  • Yakhnin, A.V., Yakhnin, H., and Babitzke, P. (2006b) RNA polymerase pausing participates in the Bacillus subtilis trpE translation control mechanism by providing additional time for TRAP to bind to the nascent trp leader transcript. Mol Cell 24: 547557.