SEARCH

SEARCH BY CITATION

References

  • Ansaldi, M., Bordi, C., Lepelletier, M., and Méjean, V. (1999) TorC apocytochrome negatively autoregulates the trimethylamine N-oxide (TMAO) reductase operon in Escherichia coli. Mol Microbiol 33: 284295.
  • Baraquet, C., Théraulaz, L., Guiral, M., Lafitte, D., Méjean, V., and Jourlin-Castelli, C. (2006) TorT, a member of a new periplasmic binding protein family, triggers induction of the Tor respiratory system upon trimethylamine N-oxide electron-acceptor binding in Escherichia coli. J Biol Chem 281: 3818938199.
  • Barrett, E.L., and Kwan, H.S. (1985) Bacterial reduction of trimethylamine oxide. Annu Rev Microbiol 39: 131149.
  • Bebbington, K.J., and Williams, H.D. (2001) A role for DNA supercoiling in the regulation of the cytochrome bd oxidase of Escherichia coli. Microbiology 147: 591598.
  • Bell, L.C., Richardson, D.J., and Ferguson, S.J. (1990) Periplasmic and membrane-bound respiratory nitrate reductases in Thiosphaera pantotropha: the periplasmic enzyme catalyzes the first step in aerobic denitrification. FEBS Lett 265: 8587.
  • Berks, B.C., Sargent, F., and Palmer, T. (2000) The Tat protein export pathway. Mol Microbiol 35: 260274.
  • Blot, N., Mavathur, R., Geertz, M., Travers, A., and Muskhelishvili, G. (2006) Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome. EMBO Rep 7: 710715.
  • Bordi, C., Théraulaz, L., Méjean, V., and Jourlin-Castelli, C. (2003) Anticipating an alkaline stress through the Tor phosphorelay system in Escherichia coli. Mol Microbiol 48: 211223.
  • Carrière, F., Gargouri, Y., Moreau, H., Ransac, S., Rogalska, E., and Verger, R. (1994) Gastric lipases: cellular, biochemical and kinetic aspects. In Woolley, P., and Petersen, S.B. (eds). Lipases. New York: Cambridge University Press, pp. 181205.
  • Carter, J.P., Hsaio, Y.H., Spiro, S., and Richardson, D.J. (1995) Soil and sediment bacteria capable of aerobic nitrate respiration. Appl Environ Microbiol 61: 28522858.
  • Chang, L., Wei, L.I., Audia, J.P., Morton, R.A., and Schellhorn, H.E. (1999) Expression of the Escherichia coli NRZ nitrate reductase is highly growth phase dependent and is controlled by RpoS, the alternative vegetative sigma factor. Mol Microbiol 34: 756766.
  • Chippaux, M., Bonnefoy-Orth, V., Ratouchniak, J., and Pascal, M.C. (1981) Operon fusions in the nitrate reductase operon and study of the control gene nirR in Escherichia coli. Mol Gen Genet 182: 477479.
  • Clegg, S.J., Jia, W., and Cole, J.A. (2006) Role of the Escherichia coli nitrate transport protein, NarU, in survival during severe nutrient starvation and slow growth. Microbiology 152: 20912100.
  • Constantinidou, C., Hobman, J.L., Griffiths, L., Patel, M.D., Penn, C.W., Cole, J.A., and Overton, T.W. (2006) A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth. J Biol Chem 281: 48024815.
  • Dorman, C.J., Barr, G.C., Bhriain, N.N., and Higgins, C.F. (1988) DNA supercoiling and the anaerobic and growth phase regulation of tonB gene expression. J Bacteriol 170: 28162826.
  • Gavira, M., Roldan, M.D., Castillo, F., and Moreno-Vivian, C. (2002) Regulation of nap gene expression and periplasmic nitrate reductase activity in the phototrophic bacterium Rhodobacter sphaeroides DSM158. J Bacteriol 184: 16931702.
  • Genest, O., Ilbert, M., Méjean, V., and Iobbi-Nivol, C. (2005) TorD, an essential chaperone for TorA molybdoenzyme maturation at high temperature. J Biol Chem 280: 1564415648.
  • Gennis, R.B., and Stewart, V. (1996) Respiration. In Neidhardt, F.C. (ed.). Escherichia coli and Salmonella. Washington, DC: American Society for Microbiology Press, pp. 217261.
  • Georgellis, D., Kwon, O., and Lin, E.C. (2001) Quinones as the redox signal for the arc two-component system of bacteria. Science 292: 23142316.
  • Gon, S., Giudici-Orticoni, M.T., Méjean, V., and Iobbi-Nivol, C. (2001a) Electron transfer and binding of the c-type cytochrome TorC to the trimethylamine N-oxide reductase in Escherichia coli. J Biol Chem 276: 1154511551.
  • Gon, S., Jourlin-Castelli, C., Theraulaz, L., and Méjean, V. (2001b) An unsuspected autoregulatory pathway involving apocytochrome TorC and sensor TorS in Escherichia coli. Proc Natl Acad Sci USA 98: 1161511620.
  • Grainger, D.C., Aiba, H., Hurd, D., Browning, D.F., and Busby, S.J. (2007) Transcription factor distribution in Escherichia coli: studies with FNR protein. Nucleic Acids Res 35: 269278.
  • Gram, L., and Dalgaard, P. (2002) Fish spoilage bacteria – problems and solutions. Curr Opin Biotechnol 13: 262266.
  • Heddle, J.G., Lu, T., Zhao, X., Drlica, K., and Maxwell, A. (2001) gyrB-225, a mutation of DNA gyrase that compensates for topoisomerase I deficiency: investigation of its low activity and quinolone hypersensitivity. J Mol Biol 309: 12191231.
  • Holms, H. (1996) Flux analysis and control of the central metabolic pathways in Escherichia coli. FEMS Microbiol Rev 19: 85116.
  • Hsieh, L.S., Burger, R.M., and Drlica, K. (1991) Bacterial DNA supercoiling and [ATP]/[ADP]. Changes associated with a transition to anaerobic growth. J Mol Biol 219: 443450.
  • Ilbert, M., Méjean, V., Giudici-Orticoni, M.T., Samama, J.P., and Iobbi-Nivol, C. (2003) Involvement of a mate chaperone (TorD) in the maturation pathway of molybdoenzyme TorA. J Biol Chem 278: 2878728792.
  • Iobbi-Nivol, C., Crooke, H., Griffiths, L., Grove, J., Hussain, H., Pommier, J., et al. (1994) A reassessment of the range of c-type cytochromes synthesized by Escherichia coli K-12. FEMS Microbiol Lett 119: 8994.
  • Jourlin, C., Bengrine, A., Chippaux, M., and Méjean, V. (1996) An unorthodox sensor protein (TorS) mediates the induction of the tor structural genes in response to trimethylamine N-oxide in Escherichia coli. Mol Microbiol 20: 12971306.
  • Jourlin, C., Ansaldi, M., and Méjean, V. (1997) Transphosphorylation of the TorR response regulator requires the three phosphorylation sites of the TorS unorthodox sensor in Escherichia coli. J Mol Biol 267: 770777.
  • Kang, Y., Weber, K.D., Qiu, Y., Kiley, P.J., and Blattner, F.R. (2005) Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function. J Bacteriol 187: 11351160.
  • Kappler, U., Huston, W.M., and McEwan, A.G. (2002) Control of dimethylsulfoxide reductase expression in Rhodobacter capsulatus: the role of carbon metabolites and the response regulators DorR and RegA. Microbiology 148: 605614.
  • Khoroshilova, N., Popescu, C., Munck, E., Beinert, H., and Kiley, P.J. (1997) Iron-sulfur cluster disassembly in the FNR protein of Escherichia coli by O2: [4Fe-4S] to [2Fe-2S] conversion with loss of biological activity. Proc Natl Acad Sci USA 94: 60876092.
  • Lin, E.C., and Iuchi, S. (1991) Regulation of gene expression in fermentative and respiratory systems in Escherichia coli and related bacteria. Annu Rev Genet 25: 361387.
  • Liu, X., and De Wulf, P. (2004) Probing the ArcA-P modulon of Escherichia coli by whole genome transcriptional analysis and sequence recognition profiling. J Biol Chem 279: 1258812597.
  • McCrindle, S.L., Kappler, U., and McEwan, A.G. (2005) Microbial dimethylsulfoxide and trimethylamine N-oxide respiration. Adv Microb Physiol 50: 147198.
  • Maschke, S., Wahl, A., Azaroual, N., Boulet, O., Crunelle, V., Imbenotte, M., et al. (1997) 1H-NMR analysis of trimethylamine in urine for the diagnosis of fish-odour syndrome. Clin Chim Acta 263: 139146.
  • Méjean, V., Iobbi-Nivol, C., Lepelletier, M., Giordano, G., Chippaux, M., and Pascal, M.C. (1994) TMAO anaerobic respiration in Escherichia coli: involvement of the tor operon. Mol Microbiol 11: 11691179.
  • Partridge, J.D., Sanguinetti, G., Dibden, D.P., Roberts, R.E., Poole, R.K., and Green, J. (2007) Transition of Escherichia coli from aerobic to micro-aerobic conditions involves fast and slow reacting regulatory components. J Biol Chem 282: 1123011237.
  • Pascal, M.C., Burini, J.F., and Chippaux, M. (1984) Regulation of the trimethylamine N-oxide (TMAO) reductase in Escherichia coli: analysis of tor:: Mud1 operon fusion. Mol Gen Genet 195: 351355.
  • Peter, B.J., Arsuaga, J., Breier, A.M., Khodursky, A.B., Brown, P.O., and Cozzarelli, N.R. (2004) Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli. Genome Biol 5: R87.
  • Potter, L., Angove, H., Richardson, D., and Cole, J. (2001) Nitrate reduction in the periplasm of gram-negative bacteria. Adv Microb Physiol 45: 51112.
  • Potter, L.C., Millington, P., Griffiths, L., Thomas, G.H., and Cole, J.A. (1999) Competition between Escherichia coli strains expressing either a periplasmic or a membrane-bound nitrate reductase: does Nap confer a selective advantage during nitrate-limited growth? Biochem J 344: 7784.
  • Reyes-Dominguez, Y., Contreras-Ferrat, G., Ramirez-Santos, J., Membrillo-Hernandez, J., and Gomez-Eichelmann, M.C. (2003) Plasmid DNA supercoiling and gyrase activity in Escherichia coli wild-type and rpoS stationary-phase cells. J Bacteriol 185: 10971100.
  • Richardson, D.J., and Ferguson, S.J. (1992) The influence of carbon substrate on the activity of the periplasmic nitrate reductase in aerobically grown Thiosphera pantotropha. Arch Microbiol 157: 131137.
  • Robertson, L.A., and Kuenen, J.G. (1984) Aerobic denitrification: a controversy revived. Arch Microbiol 139: 351354.
  • Salmon, K., Hung, S.P., Mekjian, K., Baldi, P., Hatfield, G.W., and Gunsalus, R.P. (2003) Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR. J Biol Chem 278: 2983729855.
  • Sears, H.J., Spiro, S., and Richardson, D.J. (1997) The effect of carbon substrate and aeration on nitrate reduction and expression of the periplasmic and membrane-bound nitrae reductases of Paracoccus denitrificans Pd1222. Microbiology 143: 37673774.
  • Sears, H.J., Sawers, G., Berks, B.C., Ferguson, S.J., and Richardson, D.J. (2000) Control of periplasmic nitrate reductase gene expression (napEDABC) from Paracoccus pantotrophus in response to oxygen and carbon substrates. Microbiology 146: 29772985.
  • Siddiqui, R.A., Warnecke-Eberz, U., Hengsberger, A., Schneider, B., Kostka, S., and Friedrich, B. (1993) Structure and function of a periplasmic nitrate reductase in Alcaligenes eutrophus H16. J Bacteriol 175: 58675876.
  • Simon, G., Méjean, V., Jourlin, C., Chippaux, M., and Pascal, M.C. (1994) The torR gene of Escherichia coli encodes a response regulator protein involved in the expression of the trimethylamine N-oxide reductase genes. J Bacteriol 176: 56015606.
  • Simon, G., Jourlin, C., Ansaldi, M., Pascal, M.C., Chippaux, M., and Méjean, V. (1995) Binding of the TorR regulator to cis-acting direct repeats activates tor operon expression. Mol Microbiol 17: 971980.
  • Spector, M.P., Garcia, D.P., Bearson, S.M., Mahmud, A., Magut, M., Finlay, B.B., et al. (1999) The rpoS-dependent starvation-stress response locus stiA encodes a nitrate reductase (narZYWV) required for carbon-starvation-inducible thermotolerance and acid tolerance in Salmonella typhimurium. Microbiology 145: 30353045.
  • Steck, T.R., Franco, R.J., Wang, J.Y., and Drlica, K. (1993) Topoisomerase mutations affect the relative abundance of many Escherichia coli proteins. Mol Microbiol 10: 473481.
  • Tabata, A., Yamamoto, I., Matsuzaki, M., and Satoh, T. (2005) Differential regulation of periplasmic nitrate reductase gene (napKEFDABC) expression between aerobiosis and anaerobiosis with nitrate in a denitrifying phototroph Rhodobacter sphaeroides f. sp. denitrificans. Arch Microbiol 184: 108116.
  • Tanapongpipat, S., Reid, E., Cole, J.A., and Crooke, H. (1998) Transcriptional control and essential roles of the Escherichia coli ccm gene products in formate-dependent nitrite reduction and cytochrome c synthesis. Biochem J 334: 355365.
  • Travers, A., and Muskhelishvili, G. (2005) DNA supercoiling – a global transcriptional regulator for enterobacterial growth? Nat Rev Microbiol 3: 157169.
  • Unden, G., and Bongaerts, J. (1997) Alternative respiratory pathways of Escherichia coli: energetics and transcriptional regulation in response to electron acceptors. Biochim Biophys Acta 1320: 217234.
  • Unden, G., Becker, S., Bongaerts, J., Schirawski, J., and Six, S. (1994) Oxygen regulated gene expression in facultatively anaerobic bacteria. Antonie Van Leeuwenhoek 66: 322.
  • Yancey, P.H., Rhea, M.D., Kemp, K.M., and Bailey, D.M. (2004) Trimethylamine oxide, betaine and other osmolytes in deep-sea animals: depth trends and effects on enzymes under hydrostatic pressure. Cell Mol Biol 50: 371376.