SEARCH

SEARCH BY CITATION

References

  • Van Aalten, D.M., DiRusso, C.C., Knudsen, J., and Wierenga, R.K. (2000) Crystal structure of FadR, a fatty acid-responsive transcription factor with a novel acyl coenzyme A-binding fold. EMBO J 19: 51675177.
  • Van Aalten, D.M., DiRusso, C.C., and Knudsen, J. (2001) The structural basis of acyl coenzyme A-dependent regulation of the transcription factor FadR. EMBO J 20: 20412050.
  • Aguilar, P.S., Hernandez-Arriaga, A.M., Cybulski, L.E., Erazo, A.C., and De Mendoza, D. (2001) Molecular basis of thermosensing: a two-component signal transduction thermometer in Bacillus subtilis. EMBO J 20: 16811691.
  • Badger, J., Sauder, J.M., Adams, J.M., Antonysamy, S., Bain, K., Bergseid, M.G., et al. (2005) Structural analysis of a set of proteins resulting from a bacterial genomics project. Proteins 60: 787796.
  • Barabesi, C., Galizzi, A., Mastromei, G., Rossi, M., Tamburini, E., and Perito, B. (2007) Bacillus subtilis gene cluster involved in calcium carbonate biomineralization. J Bacteriol 189: 228235.
  • Black, P.N. (1991) Primary sequence of the Escherichia coli fadL gene encoding an outer membrane protein required for long-chain fatty acid transport. J Bacteriol 173: 435442.
  • Black, P.N., DiRusso, C.C., Metzger, A.K., and Heimert, T.L. (1992) Cloning, sequencing, and expression of the fadD gene of Escherichia coli encoding acyl coenzyme A synthetase. J Biol Chem 267: 2551325520.
  • Blencke, H.M., Homuth, G., Ludwig, H., Mäder, U., Hecker, M., and Stülke, J. (2003) Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways. Metab Eng 5: 133149.
  • Bloch, K. (1971) β-Hydroxydecanoyl thioester dehydrase. In The Enzymes, Vol. 5. Boyer, P.D. (ed.). New York: Academic Press, pp. 441464.
  • Brennan, R.G. (1993) The winged-helix DNA-binding motif: another helix–turn–helix takeoff. Cell 74: 773776.
  • Bryan, E.M., Beall, B.W., and Moran, C.P., Jr (1996) A σE-dependent operon subject to catabolite repression during sporulation in Bacillus subtilis. J Bacteriol 178: 47784786.
  • Campbell, J.W., and Cronan, J.E., Jr (2001a) Escherichia coli FadR positively regulates transcription of the fabB fatty acid biosynthetic gene. J Bacteriol 183: 59825990.
  • Campbell, J.W., and Cronan, J.E., Jr (2001b) Bacterial fatty acid biosynthesis: targets for antibacterial drug discovery. Annu Rev Microbiol 55: 305332.
  • Campbell, J.W., and Cronan, J.E., Jr (2002) The enigmatic Escherichia coli fadE gene is yafH. J Bacteriol 184: 37593764.
  • Campbell, J.W., Morgan-Kiss, R.M., and Cronan, J.E., Jr (2003) A new Escherichia coli metabolic competency: growth on fatty acids by a novel anaerobic β-oxidation pathway. Mol Microbiol 47: 793805.
  • Choi, K.H., Heath, R.J., and Rock, C.O. (2000) β-Ketoacyl-acyl carrier protein synthase III (FabH) is a determining factor in branched-chain fatty acid biosynthesis. J Bacteriol 182: 365370.
  • Clark, D.P., and Cronan, J.E., Jr (1996) Two-carbon compounds and fatty acids as carbon sources. In Escherichia coli and Salmonella typhimurium Cellular and Molecular Biology. Neidhardt, F.C., Curtiss, R., III, Ingraham, J.L., Lin, E.C.C., Low, K.B., Magasanik, B., et al. (eds). Washington, DC: American Society for Microbiology Press, pp. 343357.
  • Clark, D.P., De Mendoza, D., Polacco, M.L., and Cronan, J.E., Jr (1983) β-Hydroxydecanoyl thioester dehydrase does not catalyze a rate-limiting step in Escherichia coli unsaturated fatty acid synthesis. Biochemistry 22: 58975902.
  • Cronan, J.E., Jr, and Rock, C.O. (1996) Biosynthesis of membrane lipids. In Escherichia coli and Salmonella typhimurium Celluar and Molecular Biology. Neidhardt, F.C., Curtiss, R., III, Ingraham, J.L., Lin, E.C.C., Low, K.B., Magasanik, B., et al. (eds). Washington, DC: American Society for Microbiology Press, pp. 612636.
  • Cronan, J.E., Jr, and Subrahmanyam, S. (1998) FadR, transcriptional co-ordination of metabolic expediency. Mol Microbiol 29: 937943.
  • Cronan, J.E., Jr, and Waldrop, G.L. (2002) Multi-subunit acetyl-CoA carboxylases. Prog Lipid Res 41: 407435.
  • Cybulski, L.E., Albanesi, D., Mansilla, M.C., Altabe, S., Aguilar, P.S., and De Mendoza, D. (2002) Mechanism of membrane fluidity optimization: isothermal control of the Bacillus subtilis acyl-lipid desaturase. Mol Microbiol 45: 13791388.
  • Cybulski, L.E., Del Solar, G., Craig, P.O., Espinosa, M., and De Mendoza, D. (2004) Bacillus subtilis DesR functions as a phosphorylation-activated switch to control membrane lipid fluidity. J Biol Chem 279: 3934039347.
  • Davis, M.S., and Cronan, J.E., Jr (2001) Inhibition of Escherichia coli acetyl coenzyme A carboxylase by acyl-acyl carrier protein. J Bacteriol 183: 14991503.
  • Deutscher, J., Galinier, A., and Martin-Verstraete, I. (2002) Carbohydrate uptake and metabolism. In Bacillus subtilis and Its Closest Relatives: From Genes to Cells. Sonenshein, A.L., Hoch, J.A., and Losick, R. (eds). Washington, DC: American Society for Microbiology Press, pp. 129150.
  • DiRusso, C.C., and Nyström, T. (1998) The fats of Escherichia coli during infancy and old age: regulation by global regulators, alarmones and lipid intermediates. Mol Microbiol 27: 18.
  • DiRusso, C.C., Heimert, T.L., and Metzger, A.K. (1992) Characterization of FadR, a global transcriptional regulator of fatty acid metabolism in Escherichia coli. Interaction with the fadB promoter is prevented by long chain fatty acyl coenzyme A. J Biol Chem 267: 86858691.
  • Farewell, A., Diez, A.A., DiRusso, C.C., and Nyström, T. (1996) Role of the Escherichia coli FadR regulator in stasis survival and growth-phase dependent expression of the uspA, fad and fab genes. J Bacteriol 178: 64436450.
  • Fujita, Y., Fujita, T., Miwa, Y., Nihashi, J., and Aratani, Y. (1986) Organization and transcription of the gluconate operon, gnt, of Bacillus subtilis. J Biol Chem 261: 1374413753.
  • Fujita, Y., Miwa, Y., Galinier, A., and Deutscher, J. (1995) Specific recognition of the Bacillus subtilis gnt cis-acting catabolite-responsive element by a protein complex formed between CcpA and seryl-phosphorylated HPr. Mol Microbiol 17: 953960.
  • Fujita, Y., Miwa, Y., Tojo, S., and Hirooka, K. (2007) Carbon catabolite control and metabolic networks mediated by the CcpA protein in Bacillus subtilis. In Global Regulatory Networks in Bacillus subtilis. Fujita, Y. (ed.). Kerala, India: Transworld Research Network, pp. 91110.
  • González-Pastor, J.E., Hobbs, E.C., and Losick, R. (2003) Cannibalism by sporulating bacteria. Science 301: 510513.
  • Gui, L., Sunnarborg, A., and LaPorte, D.C. (1996) Regulated expression of a repressor protein: FadR activates iclR. J Bacteriol 178: 47044709.
  • Haydon, D.J., and Guest, J.R. (1991) A new family of bacterial regulatory proteins. FEMS Microbiol Lett 63: 291295.
  • Heath, R.J., and Rock, C.O. (1995) Regulation of malonyl-CoA metabolism by acyl-acyl carrier protein and β-ketoacyl-acyl carrier protein synthases in Escherichia coli. J Biol Chem 270: 1553115538.
  • Heath, R.J., and Rock, C.O. (1996a) Regulation of fatty acid elongation and initiation by acyl-acyl carrier protein in Escherichia coli. J Biol Chem 271: 18331836.
  • Heath, R.J., and Rock, C.O. (1996b) Inhibition of β-ketoacyl-acyl carrier protein synthase III (FabH) by acyl-acyl carrier protein in Escherichia coli. J Biol Chem 271: 1099611000.
  • Henry, M.F., and Cronan, J.E., Jr (1991) Escherichia coli transcription factor that both activates fatty acid synthesis and represses fatty acid degradation. J Mol Biol 222: 843849.
  • Henry, M.F., and Cronan, J.E., Jr (1992) A new mechanism of transcriptional regulation: release of an activator triggered by small molecule binding. Cell 70: 671679.
  • Kameda, K., and Nunn, W.D. (1981) Purification and characterization of acyl coenzyme A synthetase from Escherichia coli. J Biol Chem 256: 57025707.
  • Kaneda, T. (1971) Incorporation of branched chain C6-fatty acid isomers into the related long-chain fatty acids by growing cells of Bacillus subtilis. Biochemistry 10: 340347.
  • Kaneda, T. (1977) Fatty acids of the genus Bacillus: an example of branched-chain preference. Bacterial Rev 41: 391418.
  • Kanehisa, M., Goto, S., Kawashima, S., and Nakaya, A. (2002) The KEGG databases at GenomeNet. Nucleic Acids Res 30: 4246.
  • Koburger, T., Weibezahn, J., Bernhardt, J., Homuth, G., and Hecker, M. (2005) Genome-wide mRNA profiling in glucose starved Bacillus subtilis cells. Mol Gen Genomics 274: 112.
  • Kunst, F., Ogasawara, N., Moszer, I., Albertini, A.M., Alloni, G., Azevedo, V., et al. (1997) The complete genome sequence of the Gram-positive bacterium Bacillus subtilis. Nature 390: 249256.
  • Lu, Y.-J., and Rock, C.O. (2006) Transcriptional regulation of fatty acid biosynthesis in Streptococcus pneumoniae. Mol Microbiol 59: 551566.
  • Lu, Y.J., Zhang, Y.M., and Rock, C.O. (2004) Product diversity and regulation of type II fatty acid synthases. Biochem Cell Biol 82: 145155.
  • McCue, L., Thompson, W., Carmack, C., Ryan, M.P., Liu, J.S., Derbyshire, V., and Lawrence, C.E. (2001) Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes. Nucleic Acids Res 29: 774782.
  • Maloy, S.R., and Nunn, W.D. (1981) Role of gene fadR in Escherichia coli acetate metabolism. J Bacteriol 148: 8390.
  • Marrakchi, H., Choi, K.-H., and Rock, C.O. (2002) A new mechanism for anaerobic unsaturated fatty acid formation in Streptococcus pneumoniae. J Biol Chem 277: 4480944816.
  • Marrakchi, H., DeWolf, W.E., Jr, Quinn, C., West, J., Polizzi, B.J., So, C.Y., et al. (2003) Characterization of Streptococcus pneumoniae enoyl-[acyl carrier protein] reductase (FabK). Biochem J 370: 10551062.
  • Matsuoka, H., Hirooka, K., and Fujita, Y. (2007) Organization and function of the YsiA regulon of Bacillus subtilis involved in fatty acid degradation. J Biol Chem 282: 51805194.
  • De Mendoza, D., Schujman, G.E., and Aguilar, P.S. (2002) Biosynthesis and function of membrane lipids. In Bacillus subtilis and Its Closest Relatives: From Genes to Cells. Sonenshein, A.L., Hoch, J.A., and Losick, R. (eds). Washington, DC: American Society for Microbiology Press, pp. 4355.
  • Mohan, S., Kelly, T.M., Eveland, S.S., Raetz, C.R., and Anderson, M.S. (1994) An Escherichia coli gene (fabZ) encoding (3R)-hydroxymyristoyl acyl carrier protein dehydrase. Relation to fabA and suppression of mutations in lipid A biosynthesis. J Biol Chem 269: 3289632903.
  • Nyström, T., and Neidhardt, F.C. (1994) Expression and role of the universal stress protein, UspA, of Escherichia coli during growth arrest. Mol Microbiol 11: 537544.
  • Overath, P., Pauli, G., and Schairer, H.U. (1969) Fatty acid degradation in Escherichia coli. An inducible acyl-CoA synthetase, the mapping of old-mutations, and the isolation of regulatory mutants. Eur J Biochem 7: 559574.
  • Pauli, G., and Overath, P. (1974) Fatty acid degradation in Escherichia coli: requirement of cyclic adenosine monophosphate and cyclic adenosine monophosphate receptor protein for enzyme synthesis. J Bacteriol 117: 11781183.
  • Pramanik, A., Pawar, S., Antonian, E., and Schulz, H. (1979) Five different enzymatic activities are associated with the multienzyme complex of fatty acid oxidation in Escherichia coli. J Bacteriol 137: 469473.
  • Raman, N., and DiRusso, C.C. (1995) Analysis of acyl coenzyme A binding to the transcription factor FadR and identification of amino acid residues in the carboxyl terminus required for ligand binding. J Biol Chem 270: 10921097.
  • Raman, N., Black, P.N., and DiRusso, C.C. (1997) Characterization of the fatty acid-responsive transcription factor FadR. Biochemical and genetic analyses of the native conformation and functional domains. J Biol Chem 272: 3064530650.
  • Rock, C.O., and Cronan, J.E., Jr (1996) Escherichia coli as a model for the regulation of dissociable (type II) fatty acid biosynthesis. Biochim Biophys Acta 1302: 116.
  • Rock, C.O., and Jackowski, S. (2002) Forty years of bacterial fatty acid synthesis. Biochem Biophys Res Commun 292: 11551166.
  • Schujman, G.E., and De Mendoza, D. (2005) Transcriptional control of membrane lipid synthesis in bacteria. Curr Opin Microbiol 8: 149153.
  • Schujman, G.E., and De Mendoza, D. (2006) Solving an old puzzle in phospholipid biosynthesis. Nat Chem Biol 2: 573574.
  • Schujman, G.E., Choi, K.H., Altabe, S., Rock, C.O., and De Mendoza, D. (2001) Response of Bacillus subtilis to cerulenin and acquisition of resistance. J Bacteriol 183: 30323040.
  • Schujman, G.E., Paoletti, L., Grossman, A.D., and De Mendoza, D. (2003) FapR, a bacterial transcription factor involved in global regulation of membrane lipid biosynthesis. Dev Cell 4: 663672.
  • Schujman, G.E., Guerin, M., Buschiazzo, A., Schaeffer, F., Llarrull, L.I., Reh, G., et al. (2006) Structural basis of lipid biosynthesis regulation in Gram-positive bacteria. EMBO J 25: 40744083.
  • Xu, Y., Heath, R.J., Li, Z., Rock, C.O., and White, S.W. (2001) The FadR·DNA complex. Transcriptional control of fatty acid metabolism in Escherichia coli. J Biol Chem 276: 1737317379.
  • Yanagihara, N., Suwa, M., and Mitaku, S. (1989) A theoretical method for distinguishing between soluble and membrane proteins. Biophys Chem 34: 6977.
  • Zhang, Y.M., Marrakchi, H., and Rock, C.O. (2002) The FabR (YijC) transcription factor regulates unsaturated fatty acid biosynthesis in Escherichia coli. J Biol Chem 277: 1555815565.