SEARCH

SEARCH BY CITATION

REFERENCES

  • Ainsworth E.A. & Long S.P. (2005) What have we learned from 15 years of free-air CO2 enrichment (FACE)? A meta-analytic review of the responses of photosynthesis, canopy properties and plant production to rising CO2. New Phytologist 165, 351371.
  • Aranzana M.J., Kim S., Zhao K., et al . (2005) Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. PLOS Genetics 1, 531539.
  • Benjamini Y. & Hochberg Y. (1995) Controlling the False Discovery Rate: a Practical and Powerful Approach to Multiple Testing. Journal of the Royal Statistical Society B 57, 289300.
  • Borevitz J.O., Liang D., Plouffe D., Chang H.S., Zhu T., Weigel D., Berry C.C., Winzeler E. & Chory J. (2003) Large-scale identification of single-feature polymorphisms in complex genomes. Genome Research 13, 513523.
  • Buckler E.S. & Thornsberry J.M. (2002) Plant molecular diversity and application to genomics. Current Opinion in Plant Biology 5, 107111.
  • Caspar T., Huber S.C. & Somerville C. (1985) Alterations in growth, photosynthesis, and respiration in a starchless mutant of Arabidopsis thaliana (L.) deficient in chloroplast phosphoglucomutase activity. Plant Physiology 79, 1117.
  • Chakrabarti S., Bhattacharya S. & Bhattacharya S.K. (2002) A non-radioactive assay method for determination of enzymatic activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco). Journal of Biochemical & Biophysical Methods 52, 179187.
  • Cross J.M., Von Korff M., Altmann T., Bartzetko L., Sulpice R., Gibon Y., Palacios N. & Stitt M. (2006)Variation of enzyme activities and metabolite levels in 24 Arabidopsis accessions growing in carbon-limited conditions. Plant Physiology 142, 15741588.
  • Dhingra A., Portis A.R. & Daniell H. (2004) Enhanced translation of a chloroplast-expressed RbcS gene restores small subunit levels and photosynthesis in nuclear RbcS antisense plants. Proceedings of the National Academy of Sciences of the USA 101, 63156320.
  • Edmondson D.L., Kane H.J. & Andrews T.J. (1990) Substrate isomerization inhibits ribulose bisphospate carboxylase-oxygenase during catalysis. FEBS Letters 260, 6266.
  • Ellis R.J. (1979) The most abundant protein in the world. Trends in Biochemical Sciences 4, 241244.
  • Gibon Y., Vigeolas H., Tiessen A., Geigenberger P. & Stitt M. (2002) Sensitive and high throughput metabolite assays for inorganic pyrophosphate, ADPGlc, nucleotide phosphates, and glycolytic intermediates based on a novel enzymic cycling system. Plant Journal 30, 221235.
  • Gibon Y., Bläsing O.E., Hannemann J., Carillo P., Hoehne M., Hendriks J.H.M., Palacios N., Cross J., Selbig J. & Stitt M. (2004a) A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16, 33043325.
  • Gibon Y., Bläsing O.E., Palacios N., Pankovic D., Hendriks J.H.M., Fisahn J., Höhne M., Günter M. & Stitt M. (2004b) Adjustment of diurnal starch turnover to short days: depletion of sugar during the night leads to a temporary inhibition of carbohydrate utilisation, accumulation of sugars and post-translational activation of ADPglucose pyrophosphorylase in the following light period. Plant Journal 39, 847862.
  • Gouesnard B., Bataillon T.M., Decoux G., Rozale C., Schoen D.J. & David J.L. (2001) MSTRAT: an algorithm for building germplasm core collections by maximizing allelic or phenotypic richness. Journal of Heredity 92, 9394.
  • Gutteridge S. & Pierce J. (2006) A unified theory for the basis of the limitations of the primary reaction of photosynthetic CO2 fixation. Was Dr. Pangloss right? Proceedings of the National Academy of Sciences of the USA 103, 72037204.
  • Heldt H.W., Chon C.J. & Lorimer G. (1978) Phosphate requirement for light activation of ribulose-1,5-bisphosphate carboxylase in intact spinach chloroplasts. FEBS Letters 92, 234240.
  • Hirel B. & Gallais A. (2006) Rubisco synthesis, turnover and degradation: some new thoughts on an old problem. New Phytologist 169, 445448.
  • Imai K., Suzuki Y., Makino A. & Mae T. (2005) Effects of nitrogen nutrition on the relationships betwen the levels of rbcS and rbcL mRNAs and the amount of ribulose-1, 5-bisophosphate carboxylase/oxygenase synthesised in the eight leaves of rice from emergence through senescence. Plant Cell & Environment 28, 15891600.
  • Ishimaru K., Kobayashi N., Ono K., Yano M. & Ohsugi R. (2001) Are contents of Rubisco, soluble protein and nitrogen in flag leaves of rice controlled by the same genetics?. Journal of Experimental Botany 52, 18271833.
  • Jordan D.B. & Ogren W.L. (1981) A sensitive assay procedure for simultaneous determination of ribulose-1,5-bisphoshate carboxylase and oxygenase activities. Plant Physiology 67, 237245.
  • Kane H.J., Wilkin J.M., Portis A.R. & Andrews T.J. (1998) Potent inhibition of ribulose-bisphosphate carboxylase by an oxidized impurity in ribulose-1,5-bisphosphate. Plant Physiology 117, 10591069.
  • Keys A. & Parry A.J. (1990) Ribulose bisphosphate carboxylase/oxygenase and carbonic anhydrase. In Methods in Plant Biochemistry Vol. 3 (ed. P.J.Lea) pp. 114. Academic Press, London, UK.
  • Kim K. & Portis A.D. (2006) Kinetic analysis of the slow inactivation of Rubisco during catalysis: effects of temperature, O2 and Mg++. Photosynthesis Research 87, 195204.
  • Knight S., Andersson I. & Brand C.I. (1990) Crystallographic analysis of ribulose-1,5-bisphospohate carboxylase from spinach at 2.4 A resolution. Journal of Molecular Biology 215, 113160.
  • Li G.F., Mao H.B., Ruan X., Xu Q., Gong Y.D., Zhang X.F. & Zhao N.M. (2003) An improved equation and assay for determining the CO2/O2 specificity for Rubisco. Photosynthesis Research 75, 287292.
  • Lilley R.M. & Walker D.A. (1974) An improved spectrophotometric assay for ribulose bisphosphate carboxylase. Biochimca Biophysca Acta 358, 226229.
  • Lorimer G.H. (1981) The carboxylation and oxygenation of ribulose 1,5-bisphosphate: the primary events in photosynthesis and photorespiration. Annual Review of Plant Physiology 32, 349382.
  • Lorimer G.H., Badger M.R. & Andrews T.J. (1977) D-ribulose-1,5-bisphosphate carboxylase-oxygenase – improved methods for activation and assay of catalytic activities. Analytical Biochemistry 78, 6675.
  • Lurin C., Andres C., Aubourg S., et al . (2004) Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell 16, 20892103.
  • Mitchell-Olds T. & Pedersen D. (1998) The molecular basis of quantitative genetic variation in central and secondary metabolism in Arabidopsis. Genetics 149, 739747.
  • Moore B.D., Cheng S.H., Rice J. & Seeman J.R. (1998) Sucrose cycling, Rubisco activation and prediction of photosynthetic acclimation to elevated CO2. Plant Cell & Environment 21, 905919.
  • Nei M. (1973) Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences USA 70, 33213323.
  • Nordborg M., Hu T.T., Ishino Y., et al . (2005) The pattern of polymorphism in Arabidopsis thaliana. PLOS Biology 3, 12891299.
  • Parry M.A.J., Andralojc P.J., Mitchell R.A.C., Madgwick P.J. & Keys A.J. (2003) Manipulation of Rubisco: the amount, activity, function and regulation. Journal of Experimental Botany 54, 13211333.
  • Portis A.R. (2003) Rubisco activase – Rubisco's catalytic chaperone. Photosynthesis Research 75, 1127.
  • Pritchard J.K., Stephens M. & Donnelly P. (2000) Inference of population structure using multilocus genotype data. Genetics 155, 945959.
  • Quick W.P., Schurr U., Scheibe R., Schulze E.D., Rodermel S.R., Bogorad L. & Stitt M. (1991) Decreased ribulose-1,5-bisphosphate carboxylase-oxygenase in transgenic tobacco transformed with antisense rbcs.1. Impact on photosynthesis in ambient growth-conditions. Planta 183, 542554.
  • Rhee S.Y., Beavis W., Berardini T.Z., et al . (2003) The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Research 31, 224228.
  • Sage R.F. (2002) Variation in the k(cat) of Rubisco in C-3 and C-4 plants and some implications for photosynthetic performance at high and low temperature. Journal of Experimental Botany 53, 609620.
  • Salvucci M.E., Portis A.R. & Ogren W.L. (1986) Light and CO2 response of ribulose-1,5-bisphosphate carboxylase/oxygenase activation in Arabidopsis leaves. Plant Physiology 80, 655659.
  • Schmid K.J., Ramos-Onsins S., Ringys-Beckstein H., Weisshar B. & Mitchell-Olds T.A. (2005) Multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism. Genetics 169, 16011615.
  • Schmitz-Linneweber C., Williams-Carrier R.E., Williams-Voelker P.M., Kroeger T.S., Vichas A. & Barkan A. (2006) A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 pre-mRNA. Plant Cell 18, 26502663.
  • Seemann J.R., Berry J.A., Freas S.M. & Krump M.A. (1985) Regulation of ribulose bisphosphate carboxylase activity in vivo by a light modulated inhibitor of catalysis. Proceedings of the National Academy of Sciences of the USA 82, 80248028.
  • Servaites J.C. & Geiger D.R. (1995) Regulation of ribulose 1,5-bisphosphate carboxylase/oxygenase by metabolites. Journal of Experimental Botany 46, 12771283.
  • Spreitzer R.J. & Salvucci M.E. (2002) Rubisco: structure, regulatory interactions, and possibilities for a better enzyme. Annual Review of Plant Biology 53, 449475.
  • Stitt M. & Krapp A. (1999) The interaction between elevated carbon dioxide and nitrogen nutrition: the physiological and molecular background. Pant Cell & Environment 22, 583621.
  • Stitt M. & Schultze D. (1994) Does Rubisco control the rate of photosynthesis and plant growth? An exercise in molecular ecophysiology. Plant Cell & Environment 17, 465487.
  • Stitt M., Quick W.P., Schurr U., Schulze E.D., Rodermel S.R. & Bogorad L. (1991) Decreased ribulose-1,5-bisphosphate carboxylase-oxygenase in transgenic tobacco transformed with antisense rbcs .2. Flux-control coefficients for photosynthesis in varying light, CO2, and air humidity. Planta 183, 555566.
  • Sun J., Gibson K.M., Kiirats O., Okita T.W. & Edwards G.E. (2002) Interactions of nitrate and CO2 enrichment on growth, carbohydrates, and Rubisco in Arabidopsis starch mutants. Significance of starch and hexose. Plant Physiology 130, 15731583.
  • Sun N., Ma L., Pan N., Zhao H. & Deng X.W. (2003) Evaluation of the light regulatory potential of Calvin cycle steps based on large-scale gene expression profiling data. Plant Molecular Biology 53, 467478.
  • Torjek O., Berger D., Meyer R.C., Mussig C., Schmid K.J., Sorensen T.R., Weisshaar B., Mitchell-Olds T. & Altmann T. (2003) Establishment of a high-efficiency SNP-based framework marker set for Arabidopsis. Plant Journal 36, 122140.
  • Uemura K., Suzuki Y., Shikanai T., Wadano A., Jensen R.G., Chmara W. & Yokota A. (1996) A rapid and sensitive method for determination of relative specificity of Rubisco from various species by anion-exchange chromatography. Plant Cell Physiology 37, 325331.
  • Usadel B., Nagel A., Thimm O., et al . (2005) Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses. Plant Physiology 138, 11951204.
  • Wang D. & Portis A.R. (2006) Increased sensitivity of oxidised large isoform of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) activase to ADP inhibition is due to an interaction between its carboxyl extension and nucleotide-binding pocket. Journal of Biological Chemistry 281, 2524125249.
  • Wang Y.L., Zhou J.H., Wang Y.F., Bao J.S. & Chen H.B. (2001) Properties of hybrid enzymes between Synechococcus large subunits and higher plant small subunits of ribulose-1,5-bisphosphate carboxylase/oxygenase in Escherichia coli. Archives of Biochemistry and Biophysics 396, 3542.
  • Whitney S.M., Von Caemmerer S., Hudson G.S. & Andrews T.J. (1999) Directed mutation of the Rubisco large subunit of tobacco influences photorespiration and growth. Plant Physiology 121, 579588.
  • Zhang N., Kallis R.P., Ewy R.G. & Portis A.R. (2002) Light modulation of Rubisco in Arabidopsis requires a capacity for redox regulation of the larger Rubisco activase isoform. Proceedings of the National Academy of Sciences of the USA 99, 33303334.
  • Zhao K.Y., Aranzana M.J., Kim S., et al . (2007) Arabidopsis example of association mapping in structured samples. PLOS Genetics 3, 7182.