SEARCH

SEARCH BY CITATION

REFERENCES

  • Arora R., Rowland L.J. & Tanino K. (2003) Induction and release of bud dormancy in woody perennials: a science come of age. Hortscience 38, 911921.
  • Ashworth E.N., Stirm V.E. & Volenec J.J. (1993) Seasonal variations in soluble sugars and starch within woody stems of Cornus sericea L. Tree Physiology 13, 379388.
  • Bannai H., Tamada Y., Maruyama O., Nakai K. & Miyano S. (2002) Extensive feature detection of N terminal protein sorting signals. Bioinformatics 18, 298305.
  • Benedict C., Skinner J.S., Meng R., Chang Y., Bhalerao R., Huner N.P., Finn C.E., Chen T. & Hurry V. (2006) The CBF-1-dependent low temperature signaling pathway, regulon and increase in freeze tolerance are conserved in Populus spp. Plant, Cell & Environment 7, 12591272.
  • Bookout A.L., Cummins C.L., Kramer M.F., Pesola J.M. & Mangelsdorf D.J. (2006) High-throughput real-time quantitative reverse transcription PCR. In: Current Protocols in Molecular Biology (eds F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith & K. Struhl), pp. 15.8.115.8.28. Wiley & Sons, Inc., New York.
  • Böhlenius H., Huang T., Charbonnel-Campaa L., Brunner A.M., Jansson S., Strauss S.H. & Nilsson O. (2006) CO/FT regulatory module controls timing of flowering and seasonal growth cessation in trees. Science 312, 10401043.
  • Chang S., Puryear J. & Cairney J. (1993) A simple and efficient method for isolating RNA from pine trees. Plant Molecular Biology Reporter 11, 113116.
  • Cox S.E. & Stushnoff C. (2001) Temperature related shifts in soluble carbohydrate content during dormancy and cold acclimation in Populus tremuloides. Canadian Journal of Forest Research 31, 730737.
  • Delatte T., Umhang M., Trevisan M., Eicke S., Thorneycroft D., Smith S.M. & Zeeman S.C. (2006) Evidence for distinct mechanisms of starch granule breakdown in plants. Journal of Biological Chemistry 281, 1205012059.
  • Druart N., Johansson A., Baba K., Schrader J., Sjödin A., Bhalerao R.R., Resman L., Trygg J., Moritz T. & Bhalerao R.P. (2007) Environmental and hormonal regulation of the activity-dormancy cycle in the cambial meristem involves stage-specific modulation of transcriptional and metabolic networks. The Plant Journal 50, 557573.
  • Eilat D. & Fischel R. (1991) Recurrent utilization of genetic elements in V regions of antinucleic acid antibodies from autoimmune mice. Journal of Immunology 147, 361368.
  • Elle D. & Sauter J.J. (2000) Seasonal changes of activity of a starch granule bound endoamylase and of a starch phosphorylase in poplar wood (Populus x canadensis Moench ‘robusta’) and their possible regulation by temperature and phytohormones. Journal of Plant Physiology 156, 731740.
  • Fettke J., Hejazi M., Smirnova J., Höchel E., Stage M. & Steup M. (2009) Eukaryotic starch degradation: integration of plastidial and cytosolic pathways. Journal of Experimental Botany 60, 29072922.
  • Fordham-Skelton A.P., Chilley P., Lumbreras V., Reignoux S., Fenton T.R., Dahm C.C., Pages M. & Gatehouse J.A. (2002) A novel higher plant protein tyrosine phosphatase interacts with SNF1 related protein kinases via a KIS (kinase interaction sequence) domain. The Plant Journal 29, 705715.
  • Ganesh S., Suzuki T. & Yamakawa K. (2002) Alternative splicing modulates subcellular localization of laforin. Biochemical and Biophysical Research Communications 291, 11341137.
  • Garcia-Casado G., Collada C., Allona I., Soto A., Casado R., Rodríguez-Cerezo E., Gómez L. & Aragoncillo C. (2000) Characterization of an apoplastic basic thaumatin-like protein from recalcitrant chestnut seeds. Physiologia Plantarum 110, 172180.
  • Gentry M.S., Dowen R.H., Worby C.A., Mattoo S., Ecker J.R. & Dixon J.E. (2007) The phosphatase laforin crosses evolutionary boundaries and links carbohydrate metabolism to neutral disease. Journal of Cell Biology 178, 477488.
  • Grabowski E., Miao Y., Mulisch M. & Krupinska K. (2008) Single-stranded DNA-binding protein Whirly1 in barley leaves is located in plastids and the nucleus of the same cell. Plant Physiology 147, 18001804.
  • Graf A., Schlereth A., Stitt M. & Smith A.M. (2010) Circadian control of carbohydrate availability for growth in Arabidopsis plants at night. Proceedings of the National Academy of Sciences of the United States of America 107, 94589463.
  • Hejazi M., Fettke E., Kötting O., Zeeman S.C. & Steup M. (2010) The laforin-like dual-specificity phosphatase SEX4 from Arabidopsis hydrolyzes both C6- and C3-phosphate esters introduced by starch-related dikinases and thereby affects phase transition of a-glucans. Plant Physiology 152, 711722.
  • Hinesley L.E., Pharr D.M., Snelling L.K. & Funderburk S.R. (1992) Foliar raffinose and sucrose in four conifer species: relationship to seasonal temperature. Journal of the American Society for Horticultural Science 117, 852855.
  • Horvath D. (2009) Common mechanisms regulate flowering and dormancy. Plant Science 177, 523531.
  • Howe G.T., Davis J., Jeknic Z., Chen T.H.H., Frewen B., Bradshaw H.D. & Saruul P. (1999) Physiological and genetic approaches to studying endodormancy related traits in Populus. Hortscience 34, 11741184.
  • Ibañez C., Ramos A., Acebo P., Contreras A., Casado R., Allona I. & Aragoncillo C. (2008) Overall alteration of circadian clock gene expression in the chestnut cold response. PLoS ONE 3, e3567.
  • Ibáñez C., Kozarewa I., Johansson M., Ögren E., Rohde A. & Eriksson M.E. (2010) Circadian clock components regulate entry and affect exit of seasonal dormancy as well as winter hardiness in Populus trees. Plant Physiology 153, 18231833.
  • Kerk D., Conley T.R., Rodríguez F.A., Tran H.T., Nimick M., Muench D.G. & Moorhead G.B.G. (2006) A chloroplast-localized dual-specificity protein phosphatase in Arabidopsis contains a phylogenetically dispersed and ancient carbohydrate-binding domain, which binds the polysaccharide starch. The Plant Journal 46, 400413.
  • Kerk D., Templeton G. & Moorhead B.G. (2008) Evolutionary radiation pattern of novel protein phosphatases revealed by analysis of protein data from the completely sequenced genomes of humans, green algae, and higher plants. Plant Physiology 146, 351367.
  • Kötting O., Santelia D., Edner C., et al. (2009) STARCH-EXCESS4 is a laforin-like phosphoglucan phosphatase required for starch degradation in Arabidopsis thaliana L. The Plant Cell 21, 334346.
  • Lang G.A. (1987) Dormancy: a new universal terminology. Hortscience 22, 817820.
  • Lu Y., Gehan J.P. & Sharkey T.D. (2005) Daylength and circadian effects on starch degradation and maltose metabolism. Plant Physiology 138, 22802291.
  • Minassian B.A. (2001) Progressive myoclonus epilepsy with polyglucosan bodies: Lafora disease. Advances in Neurology 89, 199210.
  • Niittylä T., Comparot-Moss S., Lue W.L., et al. (2006) Similar protein phosphatases control starch metabolism in plants and glycogen metabolism in mammals. Journal of Biological Chemistry 281, 1181511818.
  • Nitsch J.P. (1957) Photoperiodism in woody plants. Proceedings of the American Society for Horticultural Science 70, 526544.
  • Olsen J.E. (2006) Mechanisms of dormancy regulation. Acta Horticulturae 727, 157165.
  • Olsen J.E., Junttila O., Nilsen J., Eriksson M.E., Martinussen I., Olsson O., Sandberg G. & Moritz T. (1997) Ectopic expression of oat phytochrome A in hybrid aspen changes critical daylength for growth and prevents cold acclimatization. The Plant Journal 12, 13391350.
  • Ramos A., Pérez-Solís E., Ibáñez C., Casado R., Collada C., Gómez L., Aragoncillo C. & Allona I. (2005) Winter disruption of the circadian clock in chestnut. Proceedings of the National Academy of Sciences of the United States of America 102, 70377042.
  • Renaut J., Lutts S., Hoffmann L. & Hausman J.F. (2004) Responses of poplar to chilling temperatures: proteomic and physiological aspects. Plant Biology 6, 8190.
  • Rinne P., Saarelainen A. & Junttila O. (1994) Growth cessation and bud dormancy in relation to ABA level in seedlings and coppice shoots of Betula pubescens as affected by a short photoperiod, water stress and chilling. Physiologia Plantarum 90, 451458.
  • Rohde A. & Bhalerao R.P. (2007) Plant dormancy in the perennial context. Trends in Plant Science 12, 217223.
  • Ruzin S. (1999) Plant Microtechnique and Microscopy. Oxford University Press, New York.
  • Sakai A. & Larcher W. (1987) Frost Survival of Plants: Responses and Adaptation to Freezing Stress. Springer Verlag, Berlin.
  • Sauter J.J. (1988) Temperature-induced changes in starch and sugars in the stem of Populus x canadensis ‘robusta’. Journal of Plant Physiology 132, 608612.
  • Sauter J.J. & van Cleve B. (1994) Storage, mobilization and interrelations of starch, sugars, protein and fat in the ray storage tissue of poplar trees. Trees 8, 297304.
  • Sauter J.J., Wisniewski M. & Witt W. (1996) Interrelationships between ultrastructure, sugar levels, and frost hardiness of ray parenchyma cells during frost acclimation and deacclimation in poplar (Populus x canadensis Moench ‘robusta’) wood. Journal of Plant Physiology 149, 451461.
  • Schein A.I., Kissinger J.C. & Ungar L.H. (2001) Chloroplast transit peptide prediction: a peek inside the black box. Nucleic Acids Research 29, E82.
  • Schwacke R., Fischer K., Ketelsen B., Krupinska K. & Krause K. (2007) Comparative survey of plastid and mitochondrial targeting properties of transcription factors in Arabidopsis and rice. Molecular Genetics and Genomics 277, 631646.
  • Silva-Filho M.C. (2003) One ticket for multiple destinations: dual targeting of proteins to distinct subcellular locations. Current Opinion in Plant Biology 6, 589595.
  • Smith A.M., Zeeman S.C. & Simth S.M. (2005) Starch degradation. Annual Review of Plant Biology 56, 7398.
  • Smith S.M., Fulton D.C., Chia T., Thorneycroft D., Chapple A., Dunstan H., Hylton C., Zeeman S.C. & Smith A.M. (2004) Diurnal changes in the transcriptome encoding enzymes of starch metabolism provide evidence for both transcriptional and posttranscriptional regulation of starch metabolism in Arabidopsis leaves. Plant Physiology 136, 26872699.
  • Sokolov L.N., Dominguez-Solis J.R., Allary A.L., Buchanan B.B. & Luan S. (2006) A redox-regulated chloroplast protein phosphatase binds to starch diurnally and functions in its accumulation. Proceedings of the National Academy of Sciences of the United States of America 103, 97329737.
  • Strauss W.M. (1987) Screening of recombinant DNA libraries. In Current Protocols in Molecular Biology (eds F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith & K. Struhl), pp. 6.3.16.3.6. Wiley, New York.
  • Tagliabracci V.S., Turnbull J., Wang W., Girard J.M., Zhao X., Skurat A.V., Delgado-Escueta A.V., Minassian B.A., Depaoli-Roach A.A. & Roach P.J. (2007) Laforin is a glycogen phosphatase, deficiency of which leads to elevated phosphorylation of glycogen in vivo. Proceedings of the National Academy of Sciences of the United States of America 104, 1926219266.
  • Tagliabracci V.S., Girard J.M., Segvich D., Meyer C., Turnbull J., Zhao X., Minassian B.A., Depaoli-Roach A.A. & Roach P.J. (2008) Abnormal metabolism of glycogen phosphate as a cause for Lafora disease. Journal of Biological Chemistry 283, 3381633825.
  • Thomashow M.F. (1999) Plant cold acclimation: freezing tolerance genes and regulatory mechanisms. Annual Review of Plant Physiology and Plant Molecular Biology 50, 571599.
  • Thompson J.D., Higgins D.G. & Gibson T.J. (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 46734680.
  • Vander Kooi C.W., Taylor A.O., Pace R.M., Meekins D.A., Guo H.-F., Kim Y. & Gentry M.S. (2010) Structural basis for the glucan phosphatase activity of starch excess4. Proceedings of the National Academy of Sciences of the United States of America 107, 1537915384.
  • Wareing P.F. (1956) Photoperiodism in woody plants. Annual Review of Plant Physiology 7, 191214.
  • Weiser C.J. (1970) Cold resistance and injury in woody plants. Science 169, 12691278.
  • Welling A. & Palva E.T. (2006) Molecular control of cold acclimation in trees. Physiologia Plantarum 127, 167181.
  • Witt W. & Sauter J.J. (1995) In vitro degradation of starch grains by phosphorylases and amylases from poplar wood. Journal of Plant Physiology 146, 3540.
  • Witt W. & Sauter J.J. (1996) Purification and characterization of α-amylase from poplar leaves. Phytochemistry 41, 365372.
  • Worby C.A., Gentry M.S. & Dixon J.E. (2006) Laforin, a dual specificity phosphatase that dephosphorylates complex carbohydrates. Journal of Biological Chemistry 41, 3041230418.
  • Zeeman S.C., Delatte T., Messerli G., Umhang M., Stettler M., Mettler T., Streb S., Reinhold H. & Kötting O. (2007) Starch breakdown: recent discoveries suggest distinct pathways and novel mechanisms. Functional Plant Biology 34, 465473.
  • Zeeman S.C., Kossmann J. & Smith A.M. (2010) Starch: its metabolism, evolution, and biotechnological modification in plants. Annual Review of Plant Biology 61, 209234.