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REFERENCES

  • Al-Chaarani G.R., Gentzbittel L., Wedzony M. & Sarrafi A. (2005) Identification of QTLs for germination and seedling development in sunflower (Helianthus annuus L.). Plant Science 169, 221227.
  • Alonso-Blanco C. & Koornneef M. (2000) Naturally occurring variation in Arabidopsis: an underexploited resource for plant genetics. Trends in Plant Science 5, 2229.
  • Alonso-Blanco C., Aarts M.G.M., Bentsink L., Keurentjes J.J.B., Reymond M., Vreugdenhil D. & Koornneef M. (2009) What has natural variation taught us about plant development, physiology, and adaptation? The Plant Cell 21, 18771896.
  • Arends D., Prins P., Jansen R.C. & Broman K.W. (2010) R/qtl: high-throughput multiple QTL mapping. Bioinformatics 26, 29902992.
  • Asghari A. (2007) QTL analysis for cold resistance-related traits in Brassica napus using RAPD markers. International Journal of Food, Agriculture and Environment 5, 188192.
  • Benjamini Y. & Yekutieli D. (2001) The control of the false discovery rate in multiple testing under dependency. Annals of Statistics 29, 11651188.
  • Bentsink L., Hanson J., Hanhart C.J., et al. (2010) Natural variation for seed dormancy in Arabidopsis is regulated by additive genetic and molecular pathways. Proceedings of the National Academy of Sciences of the United States of America 107, 42644269.
  • Bethke P.C., Libourel I.G.L., Aoyama N., Chung Y.Y., Still D.W. & Jones R.L. (2007) The Arabidopsis aleurone layer responds to nitric oxide, gibberellin, and abscisic acid and is sufficient and necessary for seed dormancy. Plant Physiology 143, 11731188.
  • Bewley J.D. (1997) Seed germination and dormancy. The Plant Cell 9, 10551066.
  • Bewley J.D. & Black M. (1994) Seeds: Physiology of Development and Germination. Springer, New York.
  • Borlaug N.E. & Dowswell C.R. (2003) Feeding a world of ten billion people: a 21st century challenge. In Proceedings of the International Congress in the Wake of the Double Helix: From the Green Revolution to the Gene Revolution (eds R. Tuberosa, R.L. Phillips & M. Gale), pp. 323. Avenue Media, Bologna, Italy.
  • Bradford K.J. (1990) A water relations analysis of seed-germination rates. Plant Physiology 94, 840849.
  • Bradford K.J. (1995) Water relations in seed germination. In Seed Development and Germination (eds J. Kigel & G. Galili), pp. 351396. Marcel Dekker Inc, New York, NY, USA.
  • Bray E.A. (2002) Abscisic acid regulation of gene expression during water-deficit stress in the era of the Arabidopsis genome. Plant, Cell & Environment 25, 153161.
  • Broman K.W., Wu H., Sen S. & Churchill G.A. (2003) R/qtl: QTL mapping in experimental crosses. Bioinformatics 19, 889890.
  • Buescher E., Achberger T., Amusan I., et al. (2010) Natural genetic variation in selected populations of Arabidopsis thaliana is associated with ionomic differences. PLoS One 5, e11081.
  • Campos H., Cooper A., Habben J.E., Edmeades G.O. & Schussler J.R. (2004) Improving drought tolerance in maize: a view from industry. Field Crops Research 90, 1934.
  • Capiati D.A., Pais S.M. & Tellez-Inon M.T. (2006) Wounding increases salt tolerance in tomato plants: evidence on the participation of calmodulin-like activities in cross-tolerance signalling. Journal of Experimental Botany 57, 23912400.
  • Clerkx E.J.M., El-Lithy M.E., Vierling E., Ruys G.J., Blankestijin-De Vries H., Groot S.P.C., Vreugdenhil D. & Koornneef M. (2004) Analysis of natural allelic variation of Arabidopsis seed germination and seed longevity traits between the accessions Landsberg erecta and Shakdara, using a new recombinant inbred line population. Plant Physiology 135, 432443.
  • Collins N.C., Tardieu F. & Tuberosa R. (2008) Quantitative trait loci and crop performance under abiotic stress: where do we stand? Plant Physiology 147, 469486.
  • Devicente M.C. & Tanksley S.D. (1993) QTL analysis of transgressive segregation in an interspecific tomato cross. Genetics 134, 585596.
  • Dickson M.H. (1980) Genetic aspects of seed quality. Hortscience 15, 771774.
  • Doerge R.W. & Churchill G.A. (1996) Permutation tests for multiple loci affecting a quantitative character. Genetics 142, 285294.
  • Dudley J.W. (1993) Molecular markers in plant improvement – manipulation of genes affecting quantitative traits. Crop Science 33, 660668.
  • Ebrahimi A., Maury P., Berger M., Kiani S.P., Nabipour A., Shariati F., Grieu P. & Sarrafi A. (2008) QTL mapping of seed-quality traits in sunflower recombinant inbred lines under different water regimes. Genome 51, 599615.
  • El-Kassaby Y.A. (1991) Genetic variation within and among conifer populations: review and evaluation of methods. In Biochemical Markers in the Population Genetics of Forest Trees (eds S. Fineschi, M.E. Malvolti, F. Cannata & H.H. Hattemer), pp. 6176. SPB Academic, Publishing bv, The Hague, the Netherlands.
  • Eswaran N., Parameswaran S., Sathram B., Anantharaman B., Kumar G.R.K. & Tangirala S.J. (2010) Yeast functional screen to identify genetic determinants capable of conferring abiotic stress tolerance in Jatropha curcas. BMC Biotechnology 10, 23.
  • Fait A., Angelovici R., Less H., Ohad I., Urbanczyk-Wochniak E., Fernie A.R. & Galili G. (2006) Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiology 142, 839854.
  • Finch-Savage W.E. & Leubner-Metzger G. (2006) Seed dormancy and the control of germination. New Phytologist 171, 501523.
  • Foolad M.R. (1996) Response to selection for salt tolerance during germination in tomato seed derived from PI 174263. Journal of the American Society for Horticultural Science 121, 10061011.
  • Foolad M.R. & Chen F.Q. (1999) RFLP mapping of QTLs conferring salt tolerance during the vegetative stage in tomato. Theoretical and Applied Genetics 99, 235243.
  • Foolad M.R. & Lin G.Y. (1998) Genetic analysis of low-temperature tolerance during germination in tomato, Lycopersicon esculentum Mill. Plant Breeding 117, 171176.
  • Foolad M.R. & Lin G.Y. (2000) Relationship between cold tolerance during seed germination and vegetative growth in tomato: Germplasm evaluation. Journal of the American Society for Horticultural Science 125, 679683.
  • Foolad M.R., Lin G.Y. & Chen F.Q. (1999) Comparison of QTLs for seed germination under non-stress, cold stress and salt stress in tomato. Plant Breeding 118, 167173.
  • Foolad M.R., Subbiah P., Kramer C., Hargrave G. & Lin G.Y. (2003a) Genetic relationships among cold, salt and drought tolerance during seed germination in an interspecific cross of tomato. Euphytica 130, 199206.
  • Foolad M.R., Zhang L.P. & Subbiah P. (2003b) Genetics of drought tolerance during seed germination in tomato: inheritance and QTL mapping. Genome 46, 536545.
  • Foolad M.R., Subbiah P. & Zhang L. (2007) Common QTL affect the rate of tomato seed germination under different stress and nonstress conditions. International Journal of Plant Genomics 2007, 97386.
  • Galpaz N. & Reymond M. (2010) Natural variation in Arabidopsis thaliana revealed a genetic network controlling germination under salt stress. PLoS One 5, e15198.
  • Goodchild N.A. & Walker M.G. (1971) A method of measuring seed germination in physiological studies. Annals of Botany 35, 615621.
  • Hayashi E., Aoyama N. & Still D.W. (2008) Quantitative trait loci associated with lettuce seed germination under different temperature and light environments. Genome 51, 928947.
  • Hilhorst H.W.M. (2007) Definitions and hypotheses of seed dormancy. In Annual Plant Reviews: Seed Development, Dormancy and Germination (eds K.J. Bradford & H. Nonogaki), pp. 5071. Blackwell Publishing, Sheffield, UK.
  • Hilhorst H.W.M. & Downie B. (1996) Primary dormancy in tomato (Lycopersicon esculentum cv Moneymaker): studies with the sitiens mutant. Journal of Experimental Botany 47, 8997.
  • Hilhorst H.W.M. & Karssen C.M. (1988) Dual effect of light on the gibberellin- and nitrate-stimulated seed germination of Sisymbrium officinale and Arabidopsis thaliana. Plant Physiology 86, 591597.
  • Hilhorst H.W.M. & Toorop P.E. (1997) Review on dormancy, germinability, and germination in crop and weed seeds. In Advances in Agronomy (ed. D.L. Sparks), pp. 111165. Academic Press, San Diego, CA, USA.
  • Hilhorst H.W.M., Finch-Savage W.E., Buitink J., Bolingue W. & Leubner-Metzger G. (2010) Dormancy in plant seeds. In Dormancy and Resistance in Harsh Environments (eds E. Lubzens, J. Cerda & M. Clark), pp. 4367. Springer, Berlin, Germany.
  • Jansen R.C., Ooijen J.W., Stam P., Lister C. & Dean C. (1995) Genotype-by-environment interaction in genetic mapping of multiple quantitative trait loci. Theoretical and Applied Genetics 91, 3337.
  • Johnson W.C., Jackson L.E., Ochoa O., van Wijk R., Peleman J., St Clair D.A. & Michelmore R.W. (2000) Lettuce, a shallow-rooted crop, and Lactuca serriola, its wild progenitor, differ at QTL determining root architecture and deep soil water exploitation. Theoretical and Applied Genetics 101, 10661073.
  • Joosen R.V.L., Ligterink W., Hilhorst H.W.M. & Keurentjes J.J.B. (2009) Advances in genetical genomics of plants. Current Genomics 10, 540549.
  • Joosen R.V.L., Kodde J., Willems L.A.J., Ligterink W., van der Plas L.H.W. & Hilhorst H.W.M. (2010) GERMINATOR: a software package for high-throughput scoring and curve fitting of Arabidopsis seed germination. The Plant Journal 62, 148159.
  • Kahn T.L., Fender S.E., Bray E.A. & O'Connell M.A. (1993) Characterization of expression of drought and abscisic acid-regulated tomato genes in the drought-resistant species Lycopersicon pennellii. Plant Physiology 103, 597605.
  • Keurentjes J.J.B., Bentsink L., Alonso-Blanco C., Hanhart C.J., Vries H.B.D., Effgen S., Vreugdenhil D. & Koornneef M. (2007) Development of a near-isogenic line population of Arabidopsis thaliana and comparison of mapping power with a recombinant inbred line population. Genetics 175, 891905.
  • Kobayashi Y. & Koyama H. (2002) QTL analysis of Al tolerance in recombinant inbred lines of Arabidopsis thaliana. Plant and Cell Physiology 43, 15261533.
  • Koller D.L., Liu L.X., Alam I., Sun Q.W., Econs M.J., Foroud T. & Turner C.H. (2009) Epistasis between QTLs for bone density variation in Copenhagen × dark agouti F2 rats. Mammalian Genome 20, 180186.
  • Koornneef M., Bentsink L. & Hilhorst H.W.M. (2002) Seed dormancy and germination. Current Opinion in Plant Biology 5, 3336.
  • Landjeva S., Lohwasser U. & Borner A. (2010) Genetic mapping within the wheat D genome reveals QTL for germination, seed vigour and longevity, and early seedling growth. Euphytica 171, 129143.
  • Langridge P., Paltridge N. & Fincher G. (2006) Functional genomics of abiotic stress tolerance in cereals. Briefings in Functional Genomics and Proteomics 4, 343354.
  • Legendre P. & Legendre L. (1998) Numerical Ecology, Vol. 20. Elsevier Science, Amsterdam.
  • Liptay A. & Schopfer P. (1983) Effect of water stress, seed coat restraint, and abscisic acid upon different germination capabilities of two tomato lines at low temperature. Plant Physiology 73, 935938.
  • Mackay T.F.C. (2001) The genetic architecture of quantitative traits. Annual Review of Genetics 35, 303339.
  • Mackay T.F.C., Stone E.A. & Ayroles J.F. (2009) The genetics of quantitative traits: challenges and prospects. Nature Reviews Genetics 10, 565577.
  • Martin B., Tauer C.G. & Lin R.K. (1999) Carbon isotope discrimination as a tool to improve water-use efficiency in tomato. Crop Science 39, 17751783.
  • Michel B.E. & Radcliffe D. (1995) A computer-program relating solute potential to solution composition for 5 solutes. Agronomy Journal 87, 126130.
  • Moyle L.C. & Muir C.D. (2010) Reciprocal insights into adaptation from agricultural and evolutionary studies in tomato. Evolutionary Applications 3, 409421.
  • Ni B.R. & Bradford K.J. (1992) Quantitative models characterizing seed germination responses to abscisic acid and osmoticum. Plant Physiology 98, 10571068.
  • Ouyang X.R., van Voorthuysen T., Toorop P.E. & Hilhorst H.W.M. (2002) Seed vigor, aging, and osmopriming affect anion and sugar leakage during imbibition of maize (Zea mays L.) caryopses. International Journal of Plant Sciences 163, 107112.
  • Pelgas B., Bousquet J., Meirmans P.G., Ritland K. & Isabel N. (2011) QTL mapping in white spruce: gene maps and genomic regions underlying adaptive traits across pedigrees, years and environments. BMC Genomics 12, 145.
  • Perez-Vega E., Paneda A., Rodriguez-Suarez C., Campa A., Giraldez R. & Ferreira J.J. (2010) Mapping of QTLs for morpho-agronomic and seed quality traits in a RIL population of common bean (Phaseolus vulgaris L.). Theoretical and Applied Genetics 120, 13671380.
  • Quesada V., Garcia-Martinez S., Piqueras P., Ponce M.R. & Micol J.L. (2002) Genetic architecture of NaCl tolerance in Arabidopsis. Plant Physiology 130, 951963.
  • Ranal M.A. & Santana D.G. (2006) How and why to measure the germination process? Revista Brasileira de Botânica 29, 111.
  • Rick C.M. (1958) The role of natural hybridization in the derivation of cultivated tomatoes of western South America. Economic Botany 12, 346367.
  • Rosielle A.A. & Hamblin J. (1981) Theoretical aspects of selection for yield in stress and non-stress environments. Crop Science 21, 943946.
  • Spano C., Buselli R., Castiglione M.R., Bottega S. & Grilli I. (2007) RNases and nucleases in embryos and endosperms from naturally aged wheat seeds stored in different conditions. Journal of Plant Physiology 164, 487495.
  • Tanksley S.D. (1993) Mapping polygenes. Annual Review of Genetics 27, 205233.
  • Thomson A.J. & El-Kassaby Y.A. (1993) Interpretation of seed-germination parameters. New Forests 7, 123132.
  • Vallejo A.J., Yanovsky M.J. & Botto J.F. (2010) Germination variation in Arabidopsis thaliana accessions under moderate osmotic and salt stresses. Annals of Botany 106, 833842.
  • Van Ooijen J.W. (1999) LOD significance thresholds for QTL analysis in experimental populations of diploid species. Heredity 83, 613624.
  • Van Ooijen J.W. & Maliepaard C. (2003) MapQTL®, Version 5.0: Software for the Calculation of QTL Positions on Genetic Maps.
  • Van Ooijen J.W. & Voorrips R.E. (2001) JoinMap® 3.0, Software for the Calculation of Genetic Linkage Maps. Plant Research International, Wageningen, the Netherlands, pp. 151.
  • Voorrips R.E., Verkerke W., Finkers R., Jongerius R. & Kanne J. (2000) Inheritance of taste components in tomato. Acta Physiologiae Plantarum 22, 259261.
  • Wahid A., Gelani S., Ashraf M. & Foolad M.R. (2007) Heat tolerance in plants: an overview. Environmental and Experimental Botany 61, 199223.
  • Wudiri B.B. & Henderson D.W. (1985) Effects of water-stress on flowering and fruit-set in processing-tomatoes. Scientia Horticulturae 27, 189198.
  • Zhang J., Zheng H.G., Aarti A., et al. (2001) Locating genomic regions associated with components of drought resistance in rice: comparative mapping within and across species. Theoretical and Applied Genetics 103, 1929.
  • Zhu J.K. (2002) Salt and drought stress signal transduction in plants. Plant Biology 53, 247273.