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Two new taxa have been added to the existing molecular phylogenies of the genus Apis. The new phylogeny supports the accepted phylogenetic relationships of {dwarf honey bees [giant honey bees (cavity-nesting honey bees)]}. Based on Bayesian and maximum parsimony trees, our analysis supports recognition of Apis indica, the Plains Honey Bee of south India, as a separate species from A. cerana. Our analysis also supports recognition of the Giant Philippines Honey Bee, A. breviligula, as a separate species from A. dorsata.