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References

  • Ambros, V., Bartel, B., Bartel, D.P. et al. (2003) A uniform system for microRNA annotation. RNA, 9, 277279.
  • Bernstein, E., Caudy, A.A., Hammond, S.M. and Hannon, G.J. (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature, 409, 363366.
  • Boelens, W.C., Palacios, I. and Mattaj, I.W. (1995) Nuclear retention of RNA as a mechanism for localization. RNA, 1, 273283.
  • Cerutti, H. (2003) RNA interference: traveling in the cell and gaining functions? Trends Genet. 19, 3946.
  • Chang, J., Provost, P. and Taylor, J.M. (2003) Resistance of human hepatitis delta virus RNAs to dicer activity. J. Virol. 77, 1191011917.
  • Doench, J.G., Petersen, C.P. and Sharp, P.A. (2003) siRNAs can function as miRNAs. Genes Dev. 17, 438442.
  • Dykxhoorn, D.M., Novina, C.D. and Sharp, P.A. (2003) Killing the messenger: short RNAs that silence gene expression. Nat. Rev. 4, 457467.
  • Finnegan, E.J., Margis, R. and Waterhouse, P.M. (2003) Posttranscriptional gene silencing is not compromised in the Arabidopsis CARPEL FACTORY (DICER-LIKE1) mutant, a homolog of Dicer-1 from Drosophila. Curr. Biol. 13, 236240.
  • Flores, R. (2001) A naked plant-specific RNA ten-fold smaller than the smallest known viral RNA: the viroid. C. R. Acad. Sci. III, 324, 943952.
  • Grishok, A., Pasquinelli, A.E., Conte, D., Li, N., Parrish, S., Ha, I., Baillie, D.L., Fire, A., Ruvkun, G. and Mello, C.C. (2001) Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell, 106, 2334.
  • Hall, I.M., Shankaranarayana, G.D., Noma, K., Ayoub, N., Cohen, A. and Grewa, I.S.I. (2002) Establishment and maintenance of a heterochromatin domain. Science, 297, 22322237.
  • Hamilton, A., Voinnet, O., Chappell, L. and Baulcombe, D. (2002) Two classes of short interfering RNA in RNA silencing. EMBO J. 21, 46714679.
  • Harders, J., Lukacs, N., Robert-Nicoud, M., Jovin, T.M. and Riesner, D. (1989) Imaging of viroids in nuclei from tomato leaf tissue by in situ hybridization and confocal laser scanning microscopy. EMBO J. 8, 39413949.
  • Hutvagner, G., McLachlan, J., Pasquinelli, A.E., Balint, E., Tuschl, T. and Zamore, P.D. (2001) A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science, 293, 834838.
  • Itaya, A., Folimonov, A., Matsuda, Y., Nelson, R.S. and Ding, B. (2001) Potato spindle tuber viroid as inducer of RNA silencing in infected tomato. Mol. Plant Microbe Interact. 14, 13321334.
  • Jenuwein, T. (2002) Molecular biology. An RNA-guided pathway for the epigenome. Science, 297, 22152218.
  • Jones, L., Ratcliff, F. and Baulcombe, D.C. (2001) RNA-directed transcriptional gene silencing in plants can be inherited independently of the RNA trigger and requires Met1 for maintenance. Curr. Biol. 11, 747757.
  • Kalantidis, K., Psaradakis, S., Tabler, M. and Tsagris, M. (2002) The occurrence of CMV-specific short RNAs in transgenic tobacco expressing virus-derived double-stranded RNA is indicative of resistance to the virus. Mol. Plant. Microbe Interact. 15, 826833.
  • Lee, Y., Jeon, K., Lee, J.T., Kim, S. and Kim, V.N. (2002) MicroRNA maturation: stepwise processing and subcellular localization. EMBO J. 21, 46634670.
  • Lee, Y., Ahn, C., Han, J. et al. (2003) The nuclear RNase III Drosha initiates microRNA processing. Nature, 425, 415419.
  • Llave, C., Xie, Z., Kasschau, K.D. and Carrington, J.C. (2002) Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science, 297, 20532056.
  • Mallory, A.C., Reinhart, B.J., Bartel, D., Vance, V.B. and Bowman, L.H. (2002) A viral suppressor of RNA silencing differentially regulates the accumulation of short interfering RNAs and micro-RNAs in tobacco. Proc. Natl. Acad. Sci. USA, 99, 1522815233.
  • Martienssen, R.A. (2003) Maintenance of heterochromatin by RNA interference of tandem repeats. Nat. Genet. 35, 213214.
  • Martinez de Alba, A.E., Flores, R. and Hernandez, C. (2002) Two chloroplastic viroids induce the accumulation of small RNAs associated with posttranscriptional gene silencing. J. Virol. 76, 1309413096.
  • Matzke, M.A. and Matzke, A.J. (2003) RNAi extends its reach. Science, 301, 10601061.
  • Matzke, M., Matzke, A.J. and Kooter, J.M. (2001) RNA: guiding gene silencing. Science, 293, 10801083.
  • Mette, M.F., Aufsatz, W., Van Der Winden, J., Matzke, M.A. and Matzke, A.J. (2000) Transcriptional silencing and promoter methylation triggered by double-stranded RNA. EMBO J. 19, 51945201.
  • Mlotshwa, S., Voinnet, O., Mette, M.F., Matzke, M., Vaucheret, H., Ding, S.W., Pruss, G. and Vance, V.B. (2002) RNA silencing and the mobile silencing signal. Plant Cell, 14, 289301.
  • Palatnik, J.F.E.A., Wu, X., Schommer, C., Schwab, R., Carrington, J.C. and Weigel, D. (2003) Control of leaf morphogenesis by microRNAs. Nature, 425, 257263.
  • Papaefthimiou, I., Hamilton, A.J., Denti, M.A., Baulcombe, D.C., Tsagris, M. and Tabler, M. (2001) Replicating potato spindle tuber viroid RNA is accompanied by short RNA fragments that are characteristic of post-transcriptional gene silencing. Nucl. Acids Res. 29, 23952400.
  • Papp, I., Mette, M.F., Aufsatz, W., Daxinger, L., Schauer, S.E., Ray, A., Van Der Winden, J., Matzke, M. and Matzke, A.J. (2003) Evidence for nuclear processing of plant micro RNA and short interfering RNA precursors. Plant Physiol. 132, 13821390.
  • Pélissier, T. and Wassenegger, M. (2000) A DNA target of 30 bp is sufficient for RNA-directed DNA methylation. RNA, 6, 5565.
  • Qi, Y. and Ding, B. (2003) Differential subnuclear localization of RNA strands of opposite polarity perived from an autonomously replicating viroid. Plant Cell, 15, 25662577.
  • Reinhart, B.J., Weinstein, E.G., Rhoades, M.W., Bartel, B. and Bartel, D.P. (2002) MicroRNAs in plants. Genes Dev. 16, 16161626.
  • Rhoades, M.W., Reinhart, B.J., Lim, L.P., Burge, C.B., Bartel, B. and Bartel, D.P. (2002) Prediction of plant microRNA targets. Cell, 110, 513520.
  • Rudenko, G.N., Ono, A. and Walbot, V. (2003) Initiation of silencing of maize MuDR/Mu transposable elements. Plant J. 33, 10131025.
  • Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
  • Schauer, S.E., Jacobsen, S.E., Meinke, D.W. and Ray, A. (2002) DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends Plant Sci. 7, 487491.
  • Schindler, I.-M. and Mühlbach, H.-P. (1992) Involvement of nuclear DNA-dependent RNA polymerases in potato spindle tuber viroid replication: a reevaluation. Plant Sci. 84, 221229.
  • Schramke, V. and Allshire, R. (2003) Hairpin RNAs and retrotransposon LTRs effect RNAi and chromatin-based gene silencing. Science, 301, 10691074.
  • Schumacher, J., Sänger, H.L. and Riesner, D. (1983) Subcellular localization of viroids in highly purified nuclei from tomato leaf tissue. EMBO J. 2, 15491555.
  • Sijen, T. and Plasterk, R.H. (2003) Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi. Nature, 426, 310314.
  • Spiesmacher, E., Mühlbach, H.P., Tabler, M. and Sänger, H.L. (1985) Synthesis of (+) and (−) RNA molecules of potato spindle tuber viroid (PSTV) in isolated nuclei and its impairment by transcription inhibitors. Biosci. Rep. 5, 251265.
  • Stark-Lorenzen, P., Guitton, M.C., Werner, R. and Mühlbach, H.P. (1997) Detection and tissue distribution of potato spindle tuber viroid in infected tomato plants by tissue print hybridization. Arch. Virol. 142, 12891296.
  • Tabler, M. and Sänger, H.L. (1984) Cloned single- and double-stranded DNA copies of potato spindle tuber viroid (PSTV) RNA and co-inoculated subgenomic DNA fragments are infectious. EMBO J. 3, 30553062.
  • Tang, G., Reinhart, B.J., Bartel, D.P. and Zamore, P.D. (2003) A biochemical framework for RNA silencing in plants. Genes Dev. 17, 4963.
  • Tsagris, M., Tabler, M. and Sänger, H.L. (1991) Ribonuclease T1 generates circular RNA molecules from viroid-specific RNA transcripts by cleavage and intramolecular ligation. Nucl. Acids Res. 19, 16051612.
  • Vaux, P., Guerineau, F., Waugh, R. and Brown, J.W. (1992) Characterization and expression of U1snRNA genes from potato. Plant Mol. Biol. 19, 959971.
  • Voinnet, O. (2001) RNA silencing as a plant immune system against viruses. Trends Genet. 17, 449459.
  • Volpe, T.A., Kidner, C., Hall, I.M., Teng, G., Grewal, S.I. and Martienssen, R.A. (2002) Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science, 297, 18331837.
  • Wassenegger, M., Heimes, S., Riedel, L. and Sänger, H.L. (1994) RNA-directed de novo methylation of genomic sequences in plants. Cell, 76, 567576.
  • Zamore, P.D. (2002) Ancient pathways programmed by small RNAs. Science, 296, 12651269.
  • Zhu, Y., Green, L., Woo, Y.M., Owens, R. and Ding, B. (2001) Cellular basis of potato spindle tuber viroid systemic movement. Virology, 279, 6977.