SEARCH

SEARCH BY CITATION

References

  • Alonso, J.M., Stepanova, A.N., Leisse, T.J. et al. (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science, 301, 653657.
  • Azpiroz-Leehan, R. and Feldmann, K.A. (1997) T-DNA insertion mutagenesis in Arabidopsis: going back and forth. Trends Genet. 13, 152156.
  • Balzerque, S., Dubreucq, B., Chauvin, S. et al. (2001) Improved PCR-walking for large-scale isolation of plant T-DNA borders. Biotechniques, 30, 496504.
  • Bechtold, N. and Pelletier, G. (1998) In planta Agrobacterium-mediated transformation of adult Arabidopsis thaliana plants by vacuum infiltration. Methods Mol. Biol. 82, 259266.
  • Bechtold, N., Ellis, J. and Pelletier, G. (1993) In planta Agrobacterium-mediated gene transfer by infiltration of adult Arabidopsis thaliana plants. C. R. Acad. Sci. Paris, 316, 11941199.
  • Beetham, P.R., Kipp, P.B., Sawycky, X.L., Arntzen, C.J. and May, G.D. (1999) A tool for functional plant genomics: chimeric RNA/DNA oligonucleotides cause in vivo gene-specific mutations. Proc. Natl Acad. Sci. USA, 96, 87748778.
  • Benfey, P.N., Ren, L. and Chua, N.-H. (1989) The CaMV 35S enhancer contains at least two domains which can confer different developmental and tissue-specific expression patterns. EMBO J. 8, 21952202.
  • Bowman, J.L., Smyth, D.R. and Meyerowitz, E.M. (1989) Genes directing flower development in Arabidopsis. Plant Cell, 1, 3752.
  • Bowman, J.L., Smyth, D.R. and Meyerowitz, E.M. (1991) Genetic interactions among floral homeotic genes of Arabidopsis. Development, 112, 120.
  • Brodersen, P., Petersen, M., Pike, H.M., Olszak, B., Skov, S., Odum, N., Jorgensen, L.B., Brown, R.E. and Mundy, J. (2002) Knockout of Arabidopsis accelerated-cell-death11 encoding a sphingosine transfer protein causes activation of programmed cell death and defense. Genes Dev. 16, 490502.
  • Brusslan, J.A., Karlin-Neumann, G.A., Huang, L. and Tobin, E.M. (1993) An Arabidopsis mutant with a reduced level of cab140 RNA is a result of cosuppression. Plant Cell, 5, 667677.
  • Chen, S., Jin, W., Wang, M., Zhang, F., Zhou, J., Jia, Q., Wu, Y., Liu, F. and Wu, P. (2003) Distribution and characterization of over 1000 T-DNA tags in rice genome. Plant J. 36, 105113.
  • Chory, J., Ecker, J.R., Briggs, S. et al. (2000) National Science Foundation-Sponsored Workshop Report: ‘The 2010 Project’ functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them. Plant Physiol. 123, 423426.
  • Clough, S.J. and Bent, A.F. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735743.
  • Colbert, T., Till, B.J., Tompa, R., Reynolds, S., Steine, M.N., Yeung, A.T., McCallum, C.M., Comai, L. and Henikoff, S. (2001) High-throughput screening for induced point mutations. Plant Physiol. 126, 480484.
  • Conklin, P.L., Norris, S.R., Wheeler, G.L., Williams, E.H., Smirnoff, N. and Last, R.L. (1999) Genetic evidence for the role of GDP-mannose in plant ascorbic acid (vitamin C) biosynthesis. Proc. Natl Acad. Sci. USA, 96, 41984203.
  • Dinneny, J.R., Yadegari, R., Fischer, R.L., Yanofsky, M.F. and Weigel, D. (2004) The role of JAGGED in shaping lateral organs. Development, 131, 11011110.
  • Edwards, K., Johnstone, C. and Thompson, C. (1991) A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucl. Acids Res. 19, 1349.
  • Eshed, Y., Baum, S.F. and Bowman, J.L. (1999) Distinct mechanisms promote polarity establishment in carpels of Arabidopsis. Cell, 99, 199209.
  • Feldmann, K.A. (1991) T-DNA insertion mutagenesis in Arabidopsis: mutational spectrum. Plant J. 1, 7182.
  • Feldmann, K.A., Malmberg, R.L. and Dean, C. (1994) Mutagenesis in Arabidopsis. In Arabidopsis (Meyerowitz, E. and Somerville, C.R., eds). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, pp. 137172.
  • Goff, S.A., Ricke, D., Lan, T.H. et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science, 296, 92100.
  • Greene, E.A., Codomo, C.A., Taylor, N.E. et al. (2003) Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics, 164, 731740.
  • Hayashi, H., Czaja, I., Lubenow, H., Schell, J. and Walden, R. (1992) Activation of a plant gene by T-DNA tagging: auxin-independent growth in vitro. Science, 258, 13501353.
  • Ichikawa, T., Nakazawa, M., Kawashima, M. et al. (2003) Sequence database of 1172 T-DNA insertion sites in Arabidopsis activation-tagging lines that showed phenotypes in T1 generation. Plant J. 36, 421429.
  • Jander, G., Norris, S.R., Rounsley, S.D., Bush, D.F., Levin, I.M. and Last, R.L. (2002) Arabidopsis map-based cloning in the post-genome era. Plant Physiol. 129, 440450.
  • Johanson, U., West, J., Lister, C., Michaels, S., Amasino, R. and Dean, C. (2000) Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time. Science, 290, 344347.
  • Kamath, R.S. and Ahringer, J. (2003) Genome-wide RNAi screening in Caenorhabditis elegans. Methods, 30, 313321.
  • Kamath, R.S., Fraser, A.G., Dong, Y. et al. (2003) Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature, 421, 231237.
  • Kardailsky, I., Shukla, V.K., Ahn, J.H., Dagenais, N., Christensen, S.K., Nguyen, J.T., Chory, J., Harrison, M.J. and Weigel, D. (1999) Activation tagging of the floral inducer FT. Science, 286, 19621965.
  • Kempin, S.A., Liljegren, S.J., Block, L.M., Rounsley, S.D., Yanofsky, M.F. and Lam, E. (1997) Targeted disruption in Arabidopsis. Nature, 389, 802803.
  • Kiegle, E., Moore, C.A., Haseloff, J., Tester, M.A. and Knight, M.R. (2000) Cell-type-specific calcium responses to drought, salt and cold in the Arabidopsis root. Plant J. 23, 267278.
  • Konieczny, A. and Ausubel, F.M. (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J. 4, 403410.
  • Krysan, P.J., Young, J.C. and Sussman, M.R. (1999) T-DNA as an insertional mutagen in Arabidopsis. Plant Cell, 11, 22832290.
  • Li, X., Zhang, Y., Clarke, J.D., Li, Y. and Dong, X. (1999) Identification and cloning of a negative regulator of systemic acquired resistance, SNI1, through a screen for suppressors of npr1–1. Cell, 98, 329339.
  • Liljegren, S.J., Ditta, G.S., Eshed, Y., Savidge, B., Bowman, J.L. and Yanofsky, M.F. (2000) SHATTERPROOF MADS-box genes control seed dispersal in Arabidopsis. Nature, 404, 766770.
  • Lister, C. and Dean, C. (1993) Recombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana. Plant J. 4, 745750.
  • Liu, Y.G. and Whittier, R.F. (1995) Thermal asymmetric interlaced PCR: automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking. Genomics, 25, 674681.
  • Lukowitz, W., Gillmor, C.S. and Scheible, W.R. (2000) Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you. Plant Physiol. 123, 795805.
  • Lukowitz, W., Nickle, T.C., Meinke, D.W., Last, R.L., Conklin, P.L. and Somerville, C.R. (2001) Arabidopsis cyt1 mutants are deficient in a mannose-1-phosphate guanylyltransferase and point to a requirement of N-linked glycosylation for cellulose biosynthesis. Proc. Natl Acad. Sci. USA, 98, 22622267.
  • Marsch-Martinez, N., Greco, R., Van Arkel, G., Herrera-Estrella, L. and Pereira, A. (2002) Activation tagging using the En-I maize transposon system in Arabidopsis. Plant Physiol. 129, 15441556.
  • Martienssen, R.A. (1998) Functional genomics: probing plant gene function and expression with transposons. Proc. Natl Acad. Sci. USA, 95, 20212026.
  • May, S.T., Clements, D. and Bennett, M.J. (2002) Finding your knockout: reverse genetics techniques for plants. Mol. Biotechnol. 20, 209221.
  • McCallum, C.M., Comai, L., Greene, E.A. and Henikoff, S. (2000) Targeted screening for induced mutations. Nat. Biotechnol. 18, 455457.
  • McConnell, J.R., Emery, J., Eshed, Y., Bao, N., Bowman, J. and Barton, M.K. (2001) Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature, 411, 709713.
  • Meinke, D.W., Meinke, L.K., Showalter, T.C., Schissel, A.M., Mueller, L.A. and Tzafrir, I. (2003) A sequence-based map of Arabidopsis genes with mutant phenotypes. Plant Physiol. 131, 409418.
  • Meyerowitz, E.M. (1987) Arabidopsis thaliana. Annu. Rev. Genet. 21, 93111.
  • Murashige, T. and Skoog, F. (1962) A revised medium for rapid growth and bio-assay with tobacco tissue cultures. Physiol. Plant. 15, 473497.
  • Nakazawa, M., Ichikawa, T., Ishikawa, A., Kobayashi, H., Tsuhara, Y., Kawashima, M., Suzuki, K., Muto, S. and Matsui, M. (2003) Activation tagging, a novel tool to dissect the functions of a gene family. Plant J. 34, 741750.
  • Nataraj, A.J., Olivos-Glander, I., Kusukawa, N. and Highsmith, W.E., (1999) Single-strand conformation polymorphism and heteroduplex analysis for gel-based mutation detection. Electrophoresis, 20, 11771185.
  • Neff, M.M., Neff, J.D., Chory, J. and Pepper, A.E. (1998) dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J. 14, 387392.
  • Palatnik, J.F., Allen, E., Wu, X., Schommer, C., Schwab, R., Carrington, J.C. and Weigel, D. (2003) Control of leaf morphogenesis by microRNAs. Nature, 425, 257263.
  • Pan, X., Liu, H., Clarke, J., Jones, J., Bevan, M. and Stein, L. (2003) ATIDB: Arabidopsis thaliana insertion database. Nucl. Acids Res. 31, 12451251.
  • Parinov, S. and Sundaresan, V. (2000) Functional genomics in Arabidopsis: large-scale insertional mutagenesis complements the genome sequencing project. Curr. Opin. Biotechnol. 11, 157161.
  • Parinov, S., Sevugan, M., Ye, D., Yang, W.C., Kumaran, M. and Sundaresan, V. (1999) Analysis of flanking sequences from dissociation insertion lines: a database for reverse genetics in Arabidopsis. Plant Cell, 11, 22632270.
  • Pelaz, S., Ditta, G.S., Baumann, E., Wisman, E. and Yanofsky, M.F. (2000) B and C floral organ identity functions require SEPALLATA MADS-box genes. Nature, 405, 200203.
  • Petersen, M., Brodersen, P., Naested, H. et al. (2000) Arabidopsis map kinase 4 negatively regulates systemic acquired resistance. Cell, 103, 11111120.
  • Redei, G.P. and Koncz, C. (1992) Classical mutagenesis. In Methods in Arabidopsis Research (Koncz, C., Chua, N.-H. and J.Schell, eds). Singapore: World Scientific, pp. 1682.
  • Rhew, R.C., Østergaard, L., Saltzman, E.S. and Yanofsky, M.F. (2003) Genetic control of methyl halide production in Arabidopsis. Curr. Biol. 13, 18091813.
  • Roeder, A.H., Ferrandiz, C. and Yanofsky, M.F. (2003) The role of the REPLUMLESS homeodomain protein in patterning the Arabidopsis fruit. Curr. Biol. 13, 16301635.
  • Saiki, R.K., Gelfand, D.H., Stoffel, S., Scharf, S.J., Higuchi, R., Horn, G.T., Mullis, K.B. and Erlich, H.A. (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science, 239, 487491.
  • Sessions, A., Burke, E., Presting, G. et al. (2002) A high-throughput Arabidopsis reverse genetics system. Plant Cell, 14, 29852994.
  • Sha, Y., Li, S., Pei, Z., Luo, L., Tian, Y. and He, C. (2003) Generation and flanking sequence analysis of a rice T-DNA tagged population. Theor. Appl. Genet. 108 , 306314.
  • Speulman, E., Metz, P.L., van Arkel, G., te Lintel Hekkert, B., Stiekema, W.J. and Pereira, A. (1999) A two-component enhancer-inhibitor transposon mutagenesis system for functional analysis of the Arabidopsis genome. Plant Cell, 11, 18531866.
  • Sundaresan, V., Springer, P., Volpe, T., Haward, S., Jones, J.D., Dean, C., Ma, H. and Martienssen, R. (1995) Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes Dev. 9, 17971810.
  • Sussman, M.R., Amasino, R.M., Young, J.C., Krysan, P.J. and Austin-Phillips, S. (2000) The Arabidopsis knockout facility at the University of Wisconsin-Madison. Plant Physiol. 124, 14651467.
  • The Arabidopsis Genome Initiative (AGI). (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796815.
  • Till, B.J., Reynolds, S.H., Greene, E.A. et al. (2003) Large-scale discovery of induced point mutations with high-throughput TILLING. Genome Res. 13, 524530.
  • Torii, K.U., Mitsukawa, N., Oosumi, T., Matsuura, Y., Yokoyama, R., Whittier, R.F. and Komeda, Y. (1996) The Arabidopsis ERECTA gene encodes a putative receptor protein kinase with extracellular leucine-rich repeats. Plant Cell. 8, 735746.
  • Tzafrir, I., Dickerman, A., Brazhnik, O., Nguyen, Q., McElver, J., Frye, C., Patton, D. and Meinke, D. (2003) The Arabidopsis SeedGenes project. Nucl. Acids Res. 31, 9093.
  • Watson, J.D. and Crick, F.H. (1953) Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. Nature, 171, 737738.
  • Weigel, D. and Glazebrook, J. (2002) Arabidopsis: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
  • Weigel, D., Ahn, J.H., Blazquez, M.A. et al. (2000) Activation tagging in Arabidopsis. Plant Physiol. 122, 10031013.
  • Wellmer, F., Riechmann, J.L., Alves-Ferreira, M. and Meyerowitz, E.M. (2004) Genome-wide analysis of spatial gene expression in Arabidopsis flowers. Plant Cell. 16, 13141326.
  • Wesley, S.V., Helliwell, C.A., Smith, N.A. et al. (2001) Construct design for efficient, effective and high-throughput gene silencing in plants. Plant J. 27, 581590.
  • Winkler, R.G., Frank, M.R., Galbraith, D.W., Feyereisen, R. and Feldmann, K.A. (1998) Systematic reverse genetics of transfer-DNA-tagged lines of Arabidopsis. Isolation of mutations in the cytochrome p450 gene superfamily. Plant Physiol. 118, 743750.
  • Yamada, K., Lim, J., Dale, J.M. et al. (2003) Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 302, 842846.
  • Zambryski, P. (1988) Basic processes underlying Agrobacterium-mediated DNA transfer to plant cells. Annu. Rev. Genet. 22, 130.