Subject index


Keyword index

  • ABA-responsive element, 75
  • ABF/AREB, 75
  • abiotic stress, 536
  • abscisic acid, 75, 112
  • ACC synthase, 813
  • ACD2, 596
  • acd6-1, 200
  • actin, 386
  • activation-tagging, 399
  • adventitious shoot, 462
  • aequorin, 12
  • agrobacterium, 622
  • agrodrench, 322
  • agroinoculation, 322
  • alternative splicing, 276
  • amino acid motif, 22
  • amino acid transport, 60
  • aminodeoxychorismate lyase, 453
  • apocarotenoid, 882
  • apoptosis, 596
  • aquaporin TIP1;1, 845
  • Ara6, 783
  • Ara7, 783
  • Arabidopsis, 1, 60, 291, 355, 366, 453, 462, 488, 512, 647, 672, 744, 845, 968, 979, 996
  • Arabidopsis thaliana, 558, 790, 826
  • aroma, 882
  • ATH1 microarrays, 260
  • AtNHX1, 752
  • AtSUC genes, 120
  • auto-activator, 942
  • AUX/IAA, 772
  • auxin, 333, 523, 712, 772, 893, 996
  • auxin response factor, 333
  • avrRps4, 366
  • AvrRpt2, 790
  • BAC libraries, 725
  • barley, 143
  • basal resistance, 633
  • benzylisoquinoline alkaloids, 302
  • berberine biosynthesis, 302
  • beta-conglycinin, 238
  • bimolecular fluorescence complementation, 419, 428
  • bioluminescence, 1
  • bitter flavor, 88
  • Botrytis cinerea, 558
  • Brassica napus, 725
  • Brassica rapa, 725
  • brassinosteroid, 399
  • BRI1, 399
  • BRL1, 399
  • bud formation, 250
  • BY2 cells, 12
  • bZIP protein, 75
  • bZIP transcription factor, 428
  • cadmium stress, 439
  • calcium signalling, 12
  • camalexin, 200, 558
  • cambium, 173
  • capillary electrophoresis, 151
  • carotenoid, 188, 622
  • Cel I, 143
  • cell cycle arrest, 131
  • cell death, 931
  • cell differentiation, 860
  • cell division, 386, 699
  • cell wall, 622, 968
  • cell wall biosynthesis, 260
  • cell-to-cell movement, 376
  • ceramide, 596
  • Cf-9, 942
  • chilling injury, 474
  • chlorophyll synthesis, 672
  • chloroplast, 931
  • chloroplast development, 672
  • choline oxidase, 474
  • chromatin immunoprecipitation, 660
  • chromatin structure, 699
  • circadian clock, 291
  • circadian rhythm, 1
  • citrus, 88
  • Cladosporium fulvum, 942
  • Cl−1, 799
  • cold tolerance, 536
  • comparative genomics, 47
  • conifer, 546
  • cow1, 686
  • CUC, 462
  • cutin, 920
  • CYP74, 35
  • cytokinesis, 386
  • cytokinin, 250, 870
  • deetiolation, 188
  • defense, 647
  • defense responses, 558
  • DET1, 344
  • development, 546, 996
  • dicarboxylic acids, 920
  • disease resistance, 225, 366, 790, 909, 968
  • disease susceptibility, 968
  • DNA arrays, 752
  • DNA methylation, 344, 500
  • dormancy, 173
  • drought tolerance, 813
  • dual silencing, 622
  • E3 ligase, 291
  • effector protein, 225
  • elicitor, 131
  • elongation growth, 333
  • embryogenesis, 835
  • endosome, 783
  • energy production, 276
  • enhancement, 744
  • epidermis, 920
  • epigenetics, 699
  • ethylene, 512, 813
  • ethylene sensitivity, 712
  • ethylmethanesulfonate, 143
  • euchromatin, 660
  • eukaryotic translation intitiation factor eIF4E, 376
  • expressed sequence tag, 47
  • expression in yeast, 120
  • F-box, 291
  • feedback inhibition, 957
  • feeding stimulant, 35
  • FHY1, 355
  • flavonoid, 88
  • FLC, 112
  • flow cytometry, 596
  • flower bud, 60
  • flowering, 112
  • FLU, 957
  • flux, 799
  • folate biosynthesis, 453
  • FRIGIDA, 112
  • fruit, 882
  • fruit ripening, 47, 344
  • functional categories, 276
  • functional genomics, 611
  • gene expression, 47, 744
  • gene expression profiling, 633
  • gene families, 276
  • gene targeting, 250
  • gene-targeting, 314
  • genome evolution, 725
  • genome expansion, 500
  • genome microstructure, 725
  • genome organization, 500, 725
  • GH3 auxin responsive genes, 333
  • global transcript profiling, 260
  • Glu tRNA reductase, 957
  • glucose signaling, 75
  • glucosinolate pathway, 893
  • glucosyltransferase, 893
  • glycinebetaine, 474
  • glycinin, 238
  • glycolysis, 575
  • glycosylphosphatidyl-inositol-anchored protein, 225
  • GNOM, 783
  • gravitropism, 250, 523, 826
  • green leaf volatiles, 35
  • growth, 799
  • gun mutants, 672
  • heme control, 957
  • histone methylation, 699
  • homoeologous recombination, 1007
  • homologous recombination, 314, 1007
  • H+1, 799
  • HR, 213
  • hydroxy fatty acids, 439
  • hydroxy-fatty acids, 920
  • hypersensitive reaction, 439
  • hypersensitive response, 586
  • hypocotyl, 333
  • immunofluorescence, 660
  • immunolocalization, 835
  • in silico expression analysis, 276
  • in situ RT-PCR, 60
  • in vitro culture, 835
  • in vitro transcription, 164
  • inositiol polyphosphate 1-phosphatase, 536
  • intracellular localization, 428
  • introns, 744
  • inverted repeat transgene, 611
  • ion homeostasis, 752
  • iron-sulfur cluster assembly, 101
  • isoprenoid, 188
  • isoxaben, 260
  • jasmonates, 35
  • jasmonic acid, 512
  • Ka:Ks, 120
  • knockout, 752
  • K+ transporters, 523
  • lateral root formation, 333
  • lateral roots, 979, 996
  • leaf development, 112
  • LEAFY, 546
  • LeAGP-1 arabinogalactan-protein, 870
  • Lepidoptera, 35
  • light stress, 439
  • lipid biosynthesis, 575
  • lipoxygenases, 439
  • lithium tolerance, 536
  • localization, 355
  • LSD1, 428
  • MADS transcription factor, 546
  • Magnaporthe grisea, 909
  • maize, 813
  • Manduca quinquemaculata, 35
  • Manduca sexta, 35
  • mass spectrometry, 151
  • MEP pathway, 188
  • meristem, 173, 622
  • metabolic engineering, 734
  • metabolic profiling, 151
  • metabolome, 151
  • metabolomics, 151
  • microarray, 173
  • microspore development, 60
  • microsynteny, 725
  • microtubule, 386
  • mitochondria, 586
  • mitochondrial permeability transition, 596
  • mitogen-activated protein kinase, 512
  • molecular cloning, 686
  • MPAO engineering, 410
  • mRNA accumulation, 744
  • mutagenesis, 143
  • mutational analysis, 410
  • MYB, 979
  • NAC, 462
  • NADPH oxidase, 931
  • necrotrophic pathogens, 558
  • NEEDLY, 546
  • nematode, 712
  • neohesperidoside, 88
  • Nfu protein, 101
  • Nicotiana tabacum, 410
  • nitrogen reallocation, 488
  • non-host resistance, 633
  • norcoclaurine synthase, 302
  • Oryza sativa, 909
  • overexpression, 870
  • oxidative stress, 734
  • oxylipin signaling, 35
  • oxylipins, 439
  • ozone, 512
  • PAD4, 200
  • p-aminobenzoate, 453
  • PAT3, 355
  • pathogenesis-related proteins, 302
  • pattern formation, 860
  • pea seed-borne mosaic virus, 376
  • pectin, 968
  • PEP-associated protein, 164
  • peptides, 488
  • phosphoinositide-specific phospholipase C, 250
  • phospholipids, 686
  • photomorphogenesis, 344, 672
  • photosynthesis, 101
  • phototropins, 826
  • phototropism, 826
  • phragmoplast, 386
  • p-hydroxybenzoate:polyprenyltransferase, 734
  • Physcomitrella patens, 250, 314
  • physical stimuli sensing, 12
  • physiological studies, 835
  • phytochrome A, 355
  • phytochromes, 826
  • PITP, 686
  • plant, 699, 860
  • plant cell nucleus, 12
  • plant development, 523, 772
  • plant secondary metabolism, 302
  • plastid, 101
  • plastid factor, 672
  • plastid sigma factor, 164
  • plastid targeting, 453
  • plastid transformation, 314
  • plastid-encoded RNA polymerase (PEP), 164
  • pollen, 979
  • pollen tube, 799
  • polyamine oxidases, 410
  • polycomb group proteins, 419
  • polyester, 920
  • polymorphism, 1007
  • Populus tremula, 173
  • post-transcriptional gene silencing, 344, 611
  • potyvirus, 376
  • powdery mildew, 633, 968
  • pre-mRNA splicing, 744
  • programmed cell death, 131
  • protein farnesyltransferase, 419
  • protein storage vacuole, 238
  • protein–protein interaction, 419, 428, 860
  • protein–protein interactions, 22
  • 14-3-3 proteins, 428
  • protoporphyrin IX, 596
  • pseudogene, 314
  • pseudogenes, 120
  • Pseudomonas syringae, 366, 790
  • Rab GTPase, 783
  • reactive oxygen species, 909
  • real-time monitoring, 1
  • receptor-like kinase, 399
  • recombination junctions, 1007
  • regiospecificity, 88
  • regulatory network, 22
  • reproduction, 546
  • resistance, 213, 376
  • resistance gene, 225, 942
  • reverse genetics, 143, 611
  • rhamnosyltransferase, 88
  • rice (Oryza sativa L), 151
  • RIN4, 790
  • ripening, 188
  • RNA interference, 611
  • RNAi antisense, 845
  • root, 523
  • root hairs, 523, 686
  • RPS4, 213, 366
  • salicylate hydroxylase, 909
  • salicylic acid, 200, 512, 558, 647, 909
  • salt tolerance, 536
  • sbm1, 376
  • SCF, 291
  • secondary metabolism, 893
  • seed development, 575
  • seed storage protein, 238
  • seedling establishment, 575
  • senescence, 813
  • sequence composition, 500
  • sequence divergence, 1007
  • shoot apical meristem, 462
  • shuffling, 942
  • signal transduction, 355, 399, 712
  • signal transmitter, 586
  • signaling, 647
  • signalling, 213
  • siRNA, 344
  • SNARE, 783
  • Solanaceae, 322
  • soybean, 238
  • spermine, 586
  • splicing variants, 120
  • Spodoptera exigua, 35
  • Spt16, 660
  • SSRP1, 660
  • stress response, 75
  • subcellular localization, 734
  • subnuclear localization, 860
  • sucrose carrier, 120
  • sucrose metabolism, 575
  • suppressor mutants, 366
  • synchronous culture, 131
  • systemic acquired resistance, 200
  • tapetum, 60, 979
  • target gene, 586
  • taste, 882
  • taxadiene, 188
  • tetrapyrrole biosynthesis, 957
  • thioglycosides, 893
  • thiohydroximates, 893
  • tip growth, 686
  • tobacco, 35, 164, 213, 586, 734
  • tobacco BY-2 cells, 131
  • Tobacco rattle virus, 322
  • tobravirus, 622
  • tomato, 47, 344, 453, 870, 942
  • transcript and metabolite profiles, 845
  • transcription, 660
  • transcription factor, 462
  • transgenic plants, 882
  • transgenic tomato, 474
  • transient expression, 213
  • transport, 488
  • triacylglycerols, 575
  • trichomes, 860
  • trienoic fatty acids, 931
  • Triticeae, 500
  • tRNA, 314
  • TTG1, 22
  • turnip crinkle virus, 647
  • ubiquinone, 734
  • ubiquitin ligase, 996
  • unigene set, 276
  • vacuolar Na+1/H+1 antiporter, 752
  • vacuolar sorting, 410
  • vesicle transport, 238, 845
  • vesicular trafficking, 752
  • virulence, 790
  • virus-induced gene silencing, 322, 622
  • wheat, 500
  • winter annual, 112
  • wood formation, 173
  • yeast two-hybrid assay, 22
  • ZEITLUPE, 291

Ancillary