Present address: Department of General Systems Studies, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro, Tokyo 153-8902, Japan.
Coordinated activation of metabolic pathways for antioxidants and defence compounds by jasmonates and their roles in stress tolerance in Arabidopsis
Version of Record online: 21 OCT 2005
The Plant Journal
Volume 44, Issue 4, pages 653–668, November 2005
How to Cite
Sasaki-Sekimoto, Y., Taki, N., Obayashi, T., Aono, M., Matsumoto, F., Sakurai, N., Suzuki, H., Hirai, M. Y., Noji, M., Saito, K., Masuda, T., Takamiya, K.-i., Shibata, D. and Ohta, H. (2005), Coordinated activation of metabolic pathways for antioxidants and defence compounds by jasmonates and their roles in stress tolerance in Arabidopsis. The Plant Journal, 44: 653–668. doi: 10.1111/j.1365-313X.2005.02560.x
- Issue online: 21 OCT 2005
- Version of Record online: 21 OCT 2005
- Received 7 May 2005; revised 3 August 2005; accepted 24 August 2005.
Table S1. The correlation coefficient of NEetr values (see Experimental procedure) in a experiment versus that in another experiment was calculated. A cDNA macroarray was composed of three membranes, A, B, and C (see MIAME). Data obtained from the membranes A, B, and C were gathered for these calculations.
Table S2. Normalized values of 8,384 Arabidopsis genes. Raw data obtained from a set of cDNA macroarray analysis after JA- or MeJA-treatment were normalized as described in the Experimental procedures. NE, RE, MF, avMF, and MaxSD (see Experimental procedures) values of 8,384 genes are listed. Genes showing a MaxSD greater than 0.301 are flagged. Expression data of organ specificity (Obayashi et. al., 2004) are also listed.
Table S3. List of the 253 genes that respond to jasmonate treatment. 253 JRGs were selected as described in Experimental procedure. Their locus ID, NE0, MF, avMF, MaxSD of jasmonate treatment, and annotation are listed. NE and RE of organ specific expression data (Obayashi et. al., 2004) are also listed.
Table S4. List of loci corresponding to jasmonate-regulated metabolic pathways. Their locus ID, NE0, MF, and avMF of jasmonate treatment are listed. In the column of expression data, cells, including MF or avMF values more than 1.7 (orange) or 2 (red) are colored. The column of Target P shows the predicted subcellular localization of each gene. The value of each cell shows the reliability of the prediction by Target P. The reliability of localization was shown as a value between 0.0 and 1.0. For example, at the highest reliability, a protein predicted to be targeted to chloroplasts would be assigned a reliability value of 1.0. Localization sites with the highest reliability are shown in color: C, chloroplast (green); M, mitochondria (light yellow); S, secretory (pale blue); O, others (pale purple). The column of organ specificity shows antilogarithm value of RE of organ specific expression data (Obayashi et. al., 2004). In the column of organ specificity (antilogarithmRE), cells, including antilogarithmRE values more than 2 (red) or less than 0.5 (green) are colored.
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Please note: Wiley Blackwell is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.