SEARCH

SEARCH BY CITATION

References

  • Abe , M. , Takahashi , T. and Komeda , Y. ( 2001 ) Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein . Plant J. 26 , 487494 .
  • Abo-el-Saad , M. and Wu , R. ( 1995 ) A rice membrane calcium-dependent protein kinase is induced by gibberellin . Plant Physiol. 108 , 787793 .
  • Adams , K.L. , Cronn , R. , Percifield , R. and Wendel , J.F. ( 2003 ) Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing . Proc. Natl Acad. Sci. USA , 100 , 46494654 .
  • Adams , K.L. , Percifield , R. and Wendel , J.F. ( 2004 ) Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid . Genetics , 168 , 22172226 .
  • Applequist , W.L. , Cronn , R. and Wendel , J.F. ( 2001 ) Comparative development of fiber in wild and cultivated cotton . Evol. Dev. 3 , 317 .
  • Arpat , A.B. , Waugh , M. , Sullivan , J.P. , Gonzales , M. , Frisch , D. , Main , D. , Wood , T. , Leslie , A. , Wing , R.A. and Wilkins , T.A. ( 2004 ) Functional genomics of cell elongation in developing cotton fibers . Plant Mol. Biol. 54 , 911929 .
  • Basra , A. and Malik , C.P. ( 1984 ) Development of the cotton fiber . Int. Rev. Cytol. 89 , 65113 .
  • Beasley , J.O. ( 1940 ) The origin of American tetraploid Gossypium species . Am. Nat. , 74 , 285286 .
  • Beasley , C.A. and Ting , I.P. ( 1974 ) The effects of plant growth substances on in vitro fiber development from unfertilized cotton ovules . Am. J. Bot. 61 , 188194 .
  • Berleth , T. , Krogan , N.T. and Scarpella , E. ( 2004 ) Auxin signals – turning genes on and turning cells around . Curr. Opin. Plant Biol. 7 , 553563 .
  • Cardle , L. , Ramsay , L. , Milbourne , D. , Macaulay , M. , Marshall , D. and Waugh , R. ( 2000 ) Computational and experimental characterization of physically clustered simple sequence repeats in plants . Genetics , 156 , 847854 .
  • Chang , S. , Puryear , J. and Cairney , J. ( 1993 ) A simple and efficient method for isolating RNA from pine trees . Plant Mol. Biol. Rep. 11 , 113116 .
  • Chou , H.H. and Holmes , M.H. ( 2001 ) DNA sequence quality trimming and vector removal . Bioinformatics , 17 , 10931104 .
  • Delmer , D.P. , Pear , J. , Andrawis , A. and Stalker , D. ( 1995 ) Genes encoding small GTP-binding proteins analogous to mammalian RAC are preferentially expressed in developing cotton fibers . Mol. Gen. Genet. 248 , 4351 .
  • Eisen , M.B. , Spellman , P.T. , Brown , P.O. and Botstein , D. ( 1998 ) Cluster analysis and display of genome-wide expression patterns . Proc. Natl Acad. Sci. USA , 95 , 1486314868 .
  • Endrizzi , J.E. , Turcotte , E.L. and Kohel , R.J. ( 1984 ) Qualitative genetics, cytology and cytogenetics . In Agronomy: Cotton ( Kohel , R.J. and Lewis , D.F. , eds ). Madison, WI : American Society of Agronomy, Inc. , pp . 5980 .
  • Fleet , C.M. and Sun , T.P. ( 2005 ) A DELLAcate balance: the role of gibberellin in plant morphogenesis . Curr. Opin. Plant Biol. 8 , 7785 .
  • Frelichowski , J.E. , Jr , Palmer , M.B. , Main , D. , Tomkins , J.P. , Cantrell , R.G. , Stelly , D.M. , Yu , J. , Kohel , R.J. and Ulloa , M. ( 2006 ) Cotton genome mapping with new microsatellites from Acala ’Maxxa’ BAC-ends . Mol. Genet. Genomics , 275 , 479491 .
  • Gialvalis , S. and Seagull , R.W. ( 2001 ) Plant hormones alter fiber initiation in unfertilized cultured ovules of Gossypium hirsutum . J. Cotton Sci. 5 , 252258 .
  • Glover , B.J. ( 2000 ) Differentiation in plant epidermal cells . J. Exp. Bot. 51 , 497505 .
  • Haigler , C.H. , Zhang , D.H. and Wilkerson , C.G. ( 2005 ) Biotechnological improvement of cotton fibre maturity . Physiol. Plant. 124 , 285294 .
  • Hedden , P. and Kamiya , Y. ( 1997 ) GIBBERELLIN BIOSYNTHESIS: enzymes, genes and their regulation . Annu. Rev. Plant Physiol. Plant Mol. Biol. 48 , 431460 .
  • Hülskamp , M. ( 2004 ) Plant trichomes: a model for cell differentiation . Nat. Rev. Mol. Cell Biol. 5 , 471480 .
  • Humphries , J.A. , Walker , A.R. , Timmis , J.N. and Orford , S.J. ( 2005 ) Two WD-repeat genes from cotton are functional homologues of the Arabidopsis thaliana TRANSPARENT TESTA GLABRA1 (TTG1) gene . Plant Mol. Biol. 57 , 6781 .
  • Ji , S.J. , Lu , Y.C. , Feng , J.X. , Wei , G. , Li , J. , Shi , Y.H. , Fu , Q. , Liu , D. , Luo , J.C. and Zhu , Y.X. ( 2003 ) Isolation and analyses of genes preferentially expressed during early cotton fiber development by subtractive PCR and cDNA array . Nucleic Acids Res. 31 , 25342543 .
  • Jiang , C. , Wright , R.J. , El-Zik , K.M. and Paterson , A.H. ( 1998 ) Polyploid formation created unique avenues for response to selection in Gossypium . Proc. Natl Acad. Sci. USA , 95 , 44194424 .
  • John , M.E. and Crow , L.J. ( 1992 ) Gene expression in cotton (Gossypium hirsutum L.) fiber: cloning of the mRNAs . Proc. Natl Acad. Sci. USA , 89 , 57695773 .
  • John , M.E. and Keller , G. ( 1995 ) Characterization of mRNA for a proline-rich protein of cotton fiber . Plant Physiol. 108 , 669676 .
  • Johnson , C.S. , Kolevski , B. and Smyth , D.R. ( 2002 ) TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor . Plant Cell , 14 , 13591375 .
  • Kepinski , S. and Leyser , O. ( 2002 ) Ubiquitination and auxin signaling: a degrading story . Plant Cell , 14 , S81S95 .
  • Kim , H.J. and Triplett , B.A. ( 2001 ) Cotton fiber growth in planta and in vitro. Models for plant cell elongation and cell wall biogenesis . Plant Physiol. 127 , 13611366 .
  • Kim , H.J. and Triplett , B.A. ( 2004 ) Cotton fiber germin-like protein. I. Molecular cloning and gene expression . Planta , 218 , 516524 .
  • Kranz , H.D. , Denekamp , M. , Greco , R. et al. ( 1998 ) Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana . Plant J. 16 , 263276 .
  • Kuhl , J.C. , Cheung , F. , Yuan , Q. et al. ( 2004 ) A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales . Plant Cell , 16 , 114125 .
  • Kumar , S. , Tamura , K. and Nei , M. ( 2004 ) MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment . Brief Bioinform. 5 , 150163 .
  • Lacape , J.M. , Nguyen , T.B. , Courtois , B. , Belot , J.L. , Giband , M. , Gourlot , J.P. , Gawryziak , G. , Roques , S. and Hau , B. ( 2005 ) QTL analysis of cotton fiber quality using multiple Gossypium hirsutum × Gossypium barbadense backcross generations . Crop Sci. 45 , 123140 .
  • Lee , J.J. , Hassan , O.S.S. , Gao , W. et al. ( 2006 ) Developmental and gene expression analyses of a cotton naked seed mutant . Planta , 223 , 418432 .
  • Li , C.H. , Zhu , Y.Q. , Meng , Y.L. , Wang , J.W. , Xu , K.X. , Zhang , T.Z. and Chen , X.Y. ( 2002 ) Isolation of genes preferentially expressed in cotton fibers by cDNA filter arrays and RT-PCR . Plant Sci. 163 , 11131120 .
  • Livak , K.J. and Schmittgen , T.D. ( 2001 ) Analysis of relative gene expression data using real-time PCR and Z(-Delta Delta C(T)) method . Methods , 25 , 402408 .
  • Loguercio , L.L. , Zhang , J.Q. and Wilkins , T.A. ( 1999 ) Differential regulation of six novel MYB-domain genes defines two distinct expression patterns in allotetraploid cotton (Gossypium hirsutum L.) . Mol. Gen. Genet. 261 , 660671 .
  • Ma , D.P. , Liu , H.C. , Tan , H. , Creech , R.G. , Jenkins , J.N. and Chang , Y.F. ( 1997 ) Cloning and characterization of a cotton lipid transfer protein gene specifically expressed in fiber cells . Biochim. Biophys. Acta 1344 , 111114 .
  • Mei , M. , Syed , N.H. , Gao , W. , Thaxton , P.M. , Smith , C.W. , Stelly , D.M. and Chen , Z.J. ( 2004 ) Genetic mapping and QTL analysis of fiber-related traits in cotton (Gossypium) . Theor. Appl. Genet. 108 , 280291 .
  • Noda , K. , Glover , B.J. , Linstead , P. and Martin , C. ( 1994 ) Flower colour intensity depends on specialized cell shape controlled by a Myb-related transcription factor . Nature , 369 , 661664 .
  • Orford , S.J. and Timmis , J.M. ( 1997 ) Abundant mRNAs specific to the developing cotton fibre . Theor. Appl. Genet. 94 , 909918 .
  • Percival , A.E. , Wendel , J.F. and Stewart , J.M. ( 1999 ) Taxonomy and germplasm resources . In Cotton: Origin, History, Technology, and Production ( Smith , C.W. and Cothren , J.T. , eds ). New York : John Wiley & Sons, Inc. , pp . 3363 .
  • Perez-Rodriguez , M. , Jaffe , F.W. , Butelli , E. , Glover , B.J. and Martin , C. ( 2005 ) Development of three different cell types is associated with the activity of a specific MYB transcription factor in the ventral petal of Antirrhinum majus flowers . Development , 132 , 359370 .
  • Pertea , G. , Huang , X. , Liang , F. et al. ( 2003 ) TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets . Bioinformatics , 19 , 651652 .
  • Quackenbush , J. ( 2001 ) Computational analysis of microarray data . Nat. Rev. Genet. 2 , 418427 .
  • Ramsay , N.A. and Glover , B.J. ( 2005 ) MYB–bHLH–WD40 protein complex and the evolution of cellular diversity . Trends Plant Sci. 10 , 6370 .
  • Reinhart , J.A. , Petersen , M.W. and John , M.E. ( 1996 ) Tissue-specific and developmental regulation of cotton gene fbl2a: demonstration of promoter activity in transgenic plants . Plant Physiol. 112 , 13311341 .
  • Rerie , W.G. , Feldmann , K.A. and Marks , M.D. ( 1994 ) The GLABRA2 gene encodes a homeo domain protein required for normal trichome development in Arabidopsis . Genes Dev. 8 , 13881399 .
  • Romualdi , C. , Bortoluzzi , S. and Danieli , G.A. ( 2001 ) Detecting differentially expressed genes in multiple tag sampling experiments: comparative evaluation of statistical tests . Hum. Mol. Genet. 10 , 21332141 .
  • Romualdi , C. , Bortoluzzi , S. , D'Alessi , F. and Danieli , G.A. ( 2003 ) IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments . Physiol. Genomics , 12 , 159162 .
  • Rosin , F.M. , Hart , J.K. , Horner , H.T. , Davies , P.J. and Hannapel , D.J. ( 2003 ) Overexpression of a knotted-like homeobox gene of potato alters vegetative development by decreasing gibberellin accumulation . Plant Physiol. 132 , 106117 .
  • Samora , P.J. , Stelly , D.M. and Kohel , R.J. ( 1994 ) Localization and mapping of the Le1 and Gl2 of cotton (Gossypium hirsutum L.) . J. Hered. 85 , 152157 .
  • Shi , Y.H. , Zhu , S.W. , Mao , X.Z. , Feng , J.X. , Qin , Y.M. , Zhang , L. , Cheng , J. , Wei , L.P. , Wang , Z.Y. and Zhu , Y.X. ( 2006 ) Transcriptome profiling, molecular biological, and physiological studies reveal a major role for ethylene in cotton fiber cell elongation . Plant Cell , 18 , 651664 .
  • Smart , L.B. , Vojdani , F. , Maeshima , M. and Wilkins , T.A. ( 1998 ) Genes involved in osmoregulation during turgor-driven cell expansion of developing cotton fibers are differentially regulated . Plant Physiol. 116 , 15391549 .
  • Stekel , D.J. , Git , Y. and Falciani , F. ( 2000 ) The comparison of gene expression from multiple cDNA libraries . Genome Res. 10 , 20552061 .
  • Sun , Y. , Veerabomma , S. , Abdel-Mageed , H.A. , Fokar , M. , Asami , T. , Yoshida , S. and Allen , R.D. ( 2005 ) Brassinosteroid regulates fiber development on cultured cotton ovules . Plant Cell Physiol. 46 , 13841391 .
  • Suo , J. , Liang , X. , Pu , L. , Zhang , Y. and Xue , Y. ( 2003 ) Identification of GhMYB109 encoding a R2R3 MYB transcription factor that is expressed specifically in fiber initials and elongating fibers of cotton (Gossypium hirsutum L.) . Biochim. Biophys. Acta , 1630 , 2534 .
  • Thiel , T. , Michalek , W. , Varshney , R.K. and Graner , A. ( 2003 ) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.) . Theor. Appl. Genet. 106 , 411422 .
  • Tiwari , S.C. and Wilkins , T.A. ( 1995 ) Cotton (Gossypium hirsutum) seed trichomes expand via diffuse growing mechanism . Can. J. Bot. 73 , 746757 .
  • Udall , J.A. , Swanson , J.M. , Haller , K. et al. ( 2006 ) A global assembly of cotton ESTs . Genome Res. 16 , 441450 .
  • Ülker , B. and Somssich , I.E. ( 2004 ) WRKY transcription factors: from DNA binding towards biological function . Curr. Opin. Plant Biol. 7 , 491498 .
  • Ulloa , M. , Saha , S. , Jenkins , J.N. , Meredith , W.R. , Jr , McCarty , J.C. , Jr and Stelly , D.M. ( 2005 ) Chromosomal assignment of RFLP linkage groups harboring important QTLs on an intraspecific cotton (Gossypium hirsutum L.) Joinmap . J. Hered. 96 , 132144 .
  • Wang , S. , Wang , J.W. , Yu , N. , Li , C.H. , Luo , B. , Gou , J.Y. , Wang , L.J. and Chen , X.Y. ( 2004 ) Control of plant trichome development by a cotton fiber MYB gene . Plant Cell , 16 , 23232334 .
  • Wang , J. , Tian , L. , Lee , H.S. et al. ( 2006 ) Genomewide nonadditive gene regulation in Arabidopsis allotetraploids . Genetics , 172 , 507517 .
  • Weijers , D. and Jurgens , G. ( 2005 ) Auxin and embryo axis formation: the ends in sight ? Curr. Opin. Plant Biol. 8 , 3237 .
  • Wendel , J.F. and Cronn , R.C. ( 2003 ) Polyploidy and the evolutionary history of cotton . Adv. Agron. 78 , 139186 .
  • Wendel , J.F. , Schnabel , A. and Seelanan , T. ( 1995 ) An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression . Mol. Phylogenet Evol. 4 , 298313 .
  • Whittaker , D.J. and Tripplett , B.A. ( 1999 ) Gene-specific changes in alpha-tubulin transcript accumulation in developing cotton fibers . Plant. Physiol. 121 , 181188 .
  • Wilkins , T.a. and Arpat , A.B. ( 2005 ) The cotton fiber transcriptome . Physiol. Plant. 124 , 295300 .
  • Wilkins , T.A. and Jernstedt , J.A. ( 1999 ) Molecular genetics of developing cotton fibers . In Cotton Fibers ( Basra , A.M. , ed . ). New York : Hawthorne Press , pp . 231267 .
  • Woodward , A.W. and Bartel , B. ( 2005 ) Auxin: regulation, action, and interaction . Ann. Bot. 95 , 707735 .
  • Wu , Y. , Machado , A.C. , White , R.G. , Llewellyn , D.J. and Dennis , E.S. ( 2006 ) Expression profiling identifies genes expressed early during lint fibre initiation in cotton . Plant Cell Physiol. 47 , 107127 .
  • Xie , Z. , Zhang , Z.L. , Zou , X. , Huang , J. , Ruas , P. , Thompson , D. and Shen , Q.J. ( 2005 ) Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells . Plant Physiol. 137 , 176189 .
  • Yang , G. and Komatsu , S. ( 2000 ) Involvement of calcium-dependent protein kinase in rice (Oryza sativa L.) lamina inclination caused by brassinolide . Plant Cell Physiol. 41 , 12431250 .
  • Yin , Y. , Wang , Z.Y. , Mora-Garcia , S. , Li , J. , Yoshida , S. , Asami , T. and Chory , J. ( 2002 ) BES1 accumulates in the nucleus in response to brassinosteroids to regulate gene expression and promote stem elongation . Cell , 109 , 181191 .
  • Zhang , T. , Yuan , Y. , Yu , J. , Guo , W. and Kohel , R.J. ( 2003 ) Molecular tagging of a major QTL for fiber strength in Upland cotton and its marker-assisted selection . Theor. Appl. Genet. 106 , 262268 .
  • Zhang , Z.L. , Xie , Z. , Zou , X. , Casaretto , J. , Ho , T.H. and Shen , Q.J. ( 2004 ) A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells . Plant Physiol. 134 , 15001513 .