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References

  • Aoki, S., Kato, S., Ichikawa, K. and Shimizu, M. (2004) Circadian expression of the PpLhcb2 gene encoding a major light-harvesting chlorophyll a/b-binding protein in the moss Physcomitrella patens. Plant Cell Physiol. 45, 6876.
  • Chiu, W., Niwa, Y., Zeng, W., Hirano, T., Kobayashi, H. and Sheen, J. (1996) Engineered GFP as a vital reporter in plants. Curr. Biol. 6, 325330.
  • Emanuelsson, O., Nielsen, H., Brunak, S. and Von Heijne, G. (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J. Mol. Biol. 300, 10051016.
  • Goffinet, B., Wickett, N.J., Shaw, A.J. and Cox, C.J. (2005) Phylogenetic significance of the rpoA loss in the chloroplast genome of mosses. Taxon, 54, 353360.
  • Hajdukiewicz, P.T., Allison, L.A. and Maliga, P. (1997) The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids. EMBO J. 16, 40414048.
  • Hattori, M., Miyake, H. and Sugita, M. (2007) A pentatricopeptide repeat protein is required for RNA processing of clpP pre-mRNA in moss chloroplasts. J. Biol. Chem. 282, 1077310782.
  • Hedtke, B., Börner, T. and Weihe, A. (1997) Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis. Science 277, 809811.
  • Hess, W.R. and Börner, T. (1999) Organellar RNA polymerases of higher plants. Int. Rev. Cytol. 190, 159.
  • Ichikawa, K., Sugita, M., Imaizumi, T., Wada, M. and Aoki, S. (2004) Differential expression on a daily basis of plastid sigma factor genes from the moss Physcomitrella patens. Regulatory interactions among PpSig5, the circadian clock, and blue light signaling mediated by cryptochromes. Plant Physiol. 136, 42854298.
  • Kabeya, Y., Hashimoto, K. and Sato, N. (2002) Identification and characterization of two phage-type RNA polymerase cDNAs in the moss Physcomitrella patens: implication of recent evolution of nuclear-encoded RNA polymerase of plastids in plants. Plant Cell Physiol. 43, 245255.
  • Kabeya, Y. and Sato, N. (2005) Unique translation at the second AUG codon determines mitochondrial localization of the phage-type RNA polymerases in the moss Physcomitrella patens. Plant Physiol. 138, 369382.
  • Kapoor, S. and Sugiura, M. (1999) Identification of two essential sequence elements in the nonconsensus type II PatpB-290 plastid promoter by using plastid transcription extracts from cultured tobacco BY-2 cells. Plant Cell, 11, 17991810.
  • Kimura, M. and Ishihama, A. (1995) Functional map of the alpha subunit of Escherichia coli RNA polymerase: amino acid substitution within the amino-terminal assembly domain. J. Mol. Biol. 254, 342349.
  • Krause, K., Maier, R.M., Kofer, W., Krupinska, K. and Herrmann, R.G. (2000) Disruption of plastid-encoded RNA polymerase genes in tobacco: expression of only a distinct set of genes is not based on selective transcription of the plastid chromosome. Mol. Gen. Genet. 263, 10221030.
  • Legen, J., Kemp, S., Krause, K., Profanter, B, Herrmann, R.G. and Mainer, R.M. (2002) Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries. Plant J. 31, 171188.
  • Lerbs-Mache, S. (1993) The 110-kDa polypeptide of spinach plastid DNA-dependent RNA polymerase: single-subunit enzyme or catalytic core of multimeric enzyme complexes? Proc. Natl Acad. Sci. USA, 90, 55095513.
  • Liere, K. and Maliga, P. (1999) In vitro characterization of the tobacco rpoB promoter reveals a core sequence motif conserved between phage-type plastid and plant mitochondrial promoters. EMBO J. 18, 249257.
  • Liere, K., Kaden, D., Maliga, P. and Börner, T. (2004) Overexpression of phage-type RNA polymerase RpoTp in tobacco demonstrates its role in chloroplast transcription by recognizing a distinct promoter type. Nucleic Acids Res. 32, 11591165.
  • Maliga, P. (1998) Two plastid RNA polymerases of higher plants: an evolving story. Trends Plant Sci. 3, 46.
  • Martin, W. and Herrmann, R.G. (1998) Gene transfer from organelles to the nucleus: how much, what happens, and why? Plant Physiol. 118, 917.
  • Mathews, D.E. and Durbin, R.D. (1990) Tagetitoxin inhibits RNA synthesis directed by RNA polymerases from chloroplasts and Escherichia coli. J. Biol. Chem. 265, 493498.
  • Nakamura, T., Ohta, M., Sugiura, M. and Sugita, M. (1999) Chloroplast ribonucleoproteins are associated with both mRNAs and intron-containing precursor tRNAs. FEBS Lett. 460, 437441.
  • Nakamura, T., Sugiura, C., Kobayashi, Y. and Sugita, M. (2005) Transcript profiling in plastid arginine tRNA-CCG gene knockout moss: construction of Physcomitrella patens plastid DNA microarray. Plant Biol. (Stuttg) 7, 258265.
  • Nishiyama, T., Hiwatashi, Y., Sakakibara, I., Kato, M. and Hasebe, M. (2000) Tagged mutagenesis and gene-trap in the moss, Physcomitrella patens by shuttle mutagenesis. DNA Res. 7, 917.
  • Nishiyama, T., Fujita, T., Shin-I, T. et al. (2003) Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution. Proc. Natl Acad. Sci. USA, 100, 80078012.
  • Reski, R. (1998) Development, genetics and molecular biology of mosses. Bot. Acta, 111, 115.
  • Shiina, T., Tsunoyama, Y., Nakahira, Y. and Khan, M.S. (2005) Plastid RNA polymerases, promoters, and transcription regulators in higher plants. Int. Rev. Cytol. 244, 168.
  • Sugita, M., Sugiura, C., Arikawa, T. and Higuchi, M. (2004) Molecular evidence of an rpoA gene in the basal moss chloroplast genomes: rpoA is a useful molecular marker for phylogenetic analysis of mosses. Hikobia 14, 171175.
  • Sugiura, C. and Sugita, M. (2004) Plastid transformation reveals that moss tRNAArg-CCG is not essential for plastid function. Plant J. 40, 314321.
  • Sugiura, C., Kobayashi, Y., Aoki, S., Sugita, C. and Sugita, M. (2003) Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus. Nucleic Acids Res. 31, 53245331.
  • Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 46734680.