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  • Alabadi, D., Gallego-Bartolomé, J., Orlando, L., Garcia-Carcel, L., Rubio, V., Frigerio, M., Iglesias-Pedraz, J.M., Espinosa, A., Deng, X.W. and Blazquez, M.A. (2007) Gibberellins modulate light signaling to prevent Arabidopsis seedling de-etiolation in darkness. Plant J. DOI: 10.1111/j.1365-313X.2007.03346.
  • Allen, T., Ingles, P.J., Praekelt, U., Smith, H. and Whitelam, G.C. (2006) Phytochrome-mediated agravitropism in Arabidopsis hypocotyls requires GIL1 and confers a fitness advantage. Plant J. 46, 641648.
  • Al-Sady, B., Ni, W., Kircher, S., Schaefer, E. and Quail, P.H. (2006) Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation. Mol. Cell, 23, 439446.
  • Bauer, D., Viczian, A., Kircher, S. et al. (2004) Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis. Plant Cell, 16, 14331445.
  • Bensmihen, S., To, A., Lambert, G., Kroj, T., Giraudat, J. and Parcy, F. (2004) Analysis of an activated ABI5 allele using a new selection method for transgenic Arabidopsis seeds. FEBS Lett. 561, 127131.
  • Carabelli, M., Sessa, G., Baima, S., Morelli, G. and Ruberti, I. (1993) The Arabidopsis Athb-2 and -4 genes are strongly induced by far-red-rich light. Plant J. 4, 469479.
  • Collins, G.A. and Tansey, W.P. (2006) The proteasome: a utility tool for transcription? Curr. Opin. Genet. Dev. 16, 197202.
  • Devlin, P.F., Patel, S.R. and Whitelam, G.C. (1998) Phytochrome E influences internode elongation and flowering time in Arabidopsis. Plant Cell, 10, 14791488.
  • Devlin, P.F., Yanovsky, M.J. and Kay, S.A. (2003) A genomic analysis of the shade avoidance response in Arabidopsis. Plant Physiol. 133, 16171629.
  • Djakovic-Petrovic, T., Wit, M.D., Voesenek, L.A. and Pierik, R. (2007) DELLA protein function in growth responses to canopy signals. Plant J. 51, 117126.
  • Duek, P.D. and Fankhauser, C. (2005) bHLH class transcription factors take centre stage in phytochrome signalling. Trends Plant Sci. 10, 5154.
  • Duek, P.D., Elmer, M.V., Van Oosten, V.R. and Fankhauser, C. (2004) The degradation of HFR1, a putative bHLH class transcription factor involved in light signaling, is regulated by phosphorylation and requires COP1. Curr. Biol. 14, 22962301.
  • Franklin, K.A. and Whitelam, G.C. (2004) Light signals, phytochromes and cross-talk with other environmental cues. J. Exp. Bot. 55, 271276.
  • Franklin, K.A. and Whitelam, G.C. (2005) Phytochromes and shade-avoidance responses in plants. Ann. Bot. 96, 169175.
  • Franklin, K.A., Praekelt, U., Stoddart, W.M., Billingham, O.E., Halliday, K.J. and Whitelam, G.C. (2003) Phytochromes B, D, and E act redundantly to control multiple physiological responses in Arabidopsis. Plant Physiol. 131, 13401346.
  • Fujimori, T., Yamashino, T., Kato, T. and Mizuno, T. (2004) Circadian-controlled basic/helix-loop-helix factor, PIL6, implicated in light-signal transduction in Arabidopsis thaliana. Plant Cell Physiol. 45, 10781086.
  • Hajdukiewicz, P., Svab, Z. and Maliga, P. (1994) The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Mol. Biol. 25, 989994.
  • Hardtke, C.S., Gohda, K., Osterlund, M.T., Oyama, T., Okada, K. and Deng, X.W. (2000) HY5 stability and activity in Arabidopsis is regulated by phosphorylation in its COP1 binding domain. EMBO J. 19, 49975006.
  • Huq, E. and Quail, P.H. (2002) PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis. EMBO J. 21, 24412450.
  • Huq, E., Al-Sady, B., Hudson, M., Kim, C., Apel, K. and Quail, P.H. (2004) PHYTOCHROME-INTERACTING FACTOR 1 is a critical bHLH regulator of chlorophyll biosynthesis. Science, 305, 19371941.
  • Jiao, Y., Lau, O. and Deng, X. (2007) Light-regulated transcriptional networks in higher plants. Nature Rev. Genet. 8, 217230.
  • Khanna, R., Huq, E., Kikis, E.A., Al-Sady, B., Lanzatella, C. and Quail, P.H. (2004) A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors. Plant Cell, 16, 30333044.
  • Kim, J., Yi, H., Choi, G., Shin, B. and Song, P.S. (2003) Functional characterization of phytochrome interacting factor 3 in phytochrome-mediated light signal transduction. Plant Cell, 15, 23992407.
  • Martinez-Garcia, J.F., Huq, E. and Quail, P.H. (2000) Direct targeting of light signals to a promoter element-bound transcription factor. Science, 288, 859863.
  • Monte, E., Tepperman, J.M., Al-Sady, B., Kaczorowski, K.A., Alonso, J.M., Ecker, J.R., Li, X., Zhang, Y. and Quail, P.H. (2004) The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development. Proc. Natl Acad. Sci. U.S.A. 101, 16 09116098.
  • Neff, M.M., Neff, J.D., Chory, J. and Pepper, A.E. (1998) dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J. 14, 387392.
  • Nozue, K., Covington, M.F., Duek, P.D., Lorrain, S., Fankhauser, C., Harmer, S.L. and Maloof, J.N. (2007) Rhythmic growth explained by coincidence between internal and external cues. Nature, 448, 358361.
  • Oh, E., Kim, J., Park, E., Kim, J.I., Kang, C. and Choi, G. (2004) PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana. Plant Cell, 16, 30453058.
  • Oh, E., Yamaguchi, S., Kamiya, Y., Bae, G., Chung, W.I. and Choi, G. (2006) Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis. Plant J. 47, 124139.
  • Park, E., Kim, J., Lee, Y., Shin, J., Oh, E., Chung, W.I., Liu, J.R. and Choi, G. (2004) Degradation of phytochrome interacting factor 3 in phytochrome-mediated light signaling. Plant Cell Physiol. 45, 968975.
  • Penfield, S., Josse, E.M., Kannangara, R., Gilday, A.D., Halliday, K.J. and Graham, I.A. (2005) Cold and light control seed germination through the bHLH transcription factor SPATULA. Curr. Biol. 15, 19982006.
  • Pfaffl, M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29, e45.
  • Quail, P.H. (2002) Phytochrome photosensory signalling networks. Nature Rev. Mol. Cell Biol. 3, 8593.
  • Richardson, K.S. and Zundel, W. (2005) The emerging role of the COP9 signalosome in cancer. Mol. Cancer Res. 3, 645653.
  • Rockwell, N.C., Su, Y.S. and Lagarias, J.C. (2006) Phytochrome structure and signaling mechanisms. Annu. Rev. Plant Biol. 57, 837858.
  • Roig-Villanova, I., Bou, J., Sorin, C., Devlin, P.F. and Martinez-Garcia, J.F. (2006) Identification of primary target genes of phytochrome signaling. Early transcriptional control during shade avoidance responses in Arabidopsis. Plant Physiol. 141, 8596.
  • Salter, M.G., Franklin, K.A. and Whitelam, G.C. (2003) Gating of the rapid shade-avoidance response by the circadian clock in plants. Nature, 426, 680683.
  • Seki, M., Narusaka, M., Kamiya, A. et al. (2002) Functional annotation of a full-length Arabidopsis cDNA collection. Science, 296, 141145.
  • Sessa, G., Carabelli, M., Sassi, M., Ciolfi, A., Possenti, M., Mittempergher, F., Becker, J., Morelli, G. and Ruberti, I. (2005) A dynamic balance between gene activation and repression regulates the shade avoidance response in Arabidopsis. Genes Dev. 19, 28112815.
  • Shen, H., Moon, J. and Huq, E. (2005) PIF1 is regulated by light-mediated degradation through the ubiquitin–26S proteasome pathway to optimize photomorphogenesis of seedlings in Arabidopsis. Plant J. 44, 10231035.
  • Shin, J., Park, E. and Choi, G. (2007) PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabidopsis. Plant J. 49, 981994.
  • Smith, H. (2000) Phytochromes and light signal perception by plants – an emerging synthesis. Nature, 407, 585591.
  • Steindler, C., Matteucci, A., Sessa, G., Weimar, T., Ohgishi, M., Aoyama, T., Morelli, G. and Ruberti, I. (1999) Shade avoidance responses are mediated by the ATHB-2 HD-Zip protein, a negative regulator of gene expression. Development, 126, 42354245.
  • Tyers, M., Tokiwa, G., Nash, R. and Futcher, B. (1992) The Cln3–Cdc28 kinase complex of S. cerevisiae is regulated by proteolysis and phosphorylation. EMBO J. 11, 17731784.
  • Vandenbussche, F., Pierik, R., Millenaar, F.F., Voesenek, L.A. and Van Der Straeten, D. (2005) Reaching out of the shade. Curr. Opin. Plant Biol. 8, 462468.
  • Viczian, A., Kircher, S., Fejes, E., Millar, A.J., Schafer, E., Kozma-Bognar, L. and Nagy, F. (2005) Functional characterization of phytochrome interacting factor 3 for the Arabidopsis thaliana circadian clockwork. Plant Cell Physiol. 46, 15911602.
  • Weigel, D., Ahn, J.H., Blazquez, M.A. et al. (2000) Activation tagging in Arabidopsis. Plant Physiol. 122, 10031014.
  • Yeh, K.C. and Lagarias, J.C. (1998) Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry. Proc. Natl Acad. Sci. U.S.A. 95, 13 97613981.