SEARCH

SEARCH BY CITATION

References

  • Abe, H., Urao, T., Ito, T., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2003) Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell, 15, 6378.
  • Arenas-Huertero, F., Arroyo, A., Zhou, L., Sheen, J. and Leon, P. (2000) Analysis of Arabidopsis glucose insensitive mutants, gin5 and gin6, reveals a central role of the plant hormone ABA in the regulation of plant vegetative development by sugar. Genes Dev. 14, 20852096.
  • Beick, S., Schmitz-Linneweber, C., Williams-Carrier, R., Jensen, B. and Barkan, A. (2008) The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts. Mol. Cell. Biol. 28, 53375347.
  • Bossi, F., Cordoba, E., Dupre, P., Mendoza, M.S., Roman, C.S. and Leon, P. (2009) The Arabidopsis ABA-INSENSITIVE (ABI) 4 factor acts as a central transcription activator of the expression of its own gene, and for the induction of ABI5 and SBE2.2 genes during sugar signaling. Plant J. 59, 359374.
  • Brady, S.M., Sarkar, S.F., Bonetta, D. and McCourt, P. (2003) The ABSCISIC ACID INSENSITIVE 3 (ABI3) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in Arabidopsis. Plant J. 34, 6775.
  • Cai, W., Ji, D., Peng, L., Guo, J., Ma, J., Zou, M., Lu, C. and Zhang, L. (2009) LPA66 is required for editing psbF chloroplast transcripts in Arabidopsis. Plant Physiol. 150, 12601271.
  • Chen, Z., Zhang, H., Jablonowski, D., Zhou, X., Ren, X., Hong, X., Schaffrath, R., Zhu, J.K. and Gong, Z. (2006) Mutations in ABO1/ELO2, a subunit of holo-Elongator, increase abscisic acid sensitivity and drought tolerance in Arabidopsis thaliana. Mol. Cell. Biol. 26, 69026912.
  • Choi, H., Hong, J., Ha, J., Kang, J. and Kim, S.Y. (2000) ABFs, a family of ABA-responsive element binding factors. J. Biol. Chem. 275, 17231730.
  • Cushing, D.A., Forsthoefel, N.R., Gestaut, D.R. and Vernon, D.M. (2005) Arabidopsis emb175 and other ppr knockout mutants reveal essential roles for pentatricopeptide repeat (PPR) proteins in plant embryogenesis. Planta, 221, 424436.
  • DalCorso, G., Pesaresi, P., Masiero, S., Aseeva, E., Schunemann, D., Finazzi, G., Joliot, P., Barbato, R. and Leister, D. (2008) A complex containing PGRL1 and PGR5 is involved in the switch between linear and cyclic electron flow in Arabidopsis. Cell, 132, 273285.
  • Dutilleul, C., Driscoll, S., Cornic, G., De Paepe, R., Foyer, C.H. and Noctor, G. (2003a) Functional mitochondrial complex I is required by tobacco leaves for optimal photosynthetic performance in photorespiratory conditions and during transients. Plant Physiol. 131, 264275.
  • Dutilleul, C., Garmier, M., Noctor, G., Mathieu, C., Chetrit, P., Foyer, C.H. and De Paepe, R. (2003b) Leaf mitochondria modulate whole cell redox homeostasis, set antioxidant capacity, and determine stress resistance through altered signaling and diurnal regulation. Plant Cell, 15, 12121226.
  • Finkelstein, R.R. and Lynch, T.J. (2000) The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor. Plant Cell, 12, 599609.
  • Finkelstein, R.R., Wang, M.L., Lynch, T.J., Rao, S. and Goodman, H.M. (1998) The Arabidopsis abscisic acid response locus ABI4 encodes an APETALA 2 domain protein. Plant Cell, 10, 10431054.
  • Fujii, H., Chinnusamy, V., Rodrigues, A., Rubio, S., Antoni, R., Park, S.Y., Cutler, S.R., Sheen, J., Rodriguez, P.L. and Zhu, J.K. (2009) In vitro reconstitution of an abscisic acid signalling pathway. Nature, 462, 660664.
  • Fujita, Y., Fujita, M., Satoh, R., Maruyama, K., Parvez, M.M., Seki, M., Hiratsu, K., Ohme-Takagi, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2005) AREB1 Is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis. Plant Cell, 17, 34703488.
  • Giraud, E., Van Aken, O., Ho, L.H. and Whelan, J. (2009) The transcription factor ABI4 is a regulator of mitochondrial retrograde expression of ALTERNATIVE OXIDASE1a. Plant Physiol. 150, 12861296.
  • Giraudat, J., Hauge, B.M., Valon, C., Smalle, J., Parcy, F. and Goodman, H.M. (1992) Isolation of the Arabidopsis ABI3 gene by positional cloning. Plant Cell, 4, 12511261.
  • Heazlewood, J.L., Howell, K.A. and Millar, A.H. (2003) Mitochondrial complex I from Arabidopsis and rice: orthologs of mammalian and fungal components coupled with plant-specific subunits. Biochim. Biophys. Acta, 1604, 159169.
  • Jiao, S., Thornsberry, J.M., Elthon, T.E. and Newton, K.J. (2005) Biochemical and molecular characterization of photosystem I deficiency in the NCS6 mitochondrial mutant of maize. Plant Mol. Biol. 57, 303313.
  • Jin, J.B., Kim, Y.A., Kim, S.J., Lee, S.H., Kim, D.H., Cheong, G.W. and Hwang, I. (2001) A new dynamin-like protein, ADL6, is involved in trafficking from the trans-Golgi network to the central vacuole in Arabidopsis. Plant Cell, 13, 15111526.
  • Karpova, O.V., Kuzmin, E.V., Elthon, T.E. and Newton, K.J. (2002) Differential expression of alternative oxidase genes in maize mitochondrial mutants. Plant Cell, 14, 32713284.
  • Keren, I., Bezawork-Geleta, A., Kolton, M., Maayan, I., Belausov, E., Levy, M., Mett, A., Gidoni, D., Shaya, F. and Ostersetzer-Biran, O. (2009) AtnMat2, a nuclear-encoded maturase required for splicing of group-II introns in Arabidopsis mitochondria. RNA, 15, 22992311.
  • Kim, S., Kang, J.Y., Cho, D.I., Park, J.H. and Kim, S.Y. (2004) ABF2, an ABRE-binding bZIP factor, is an essential component of glucose signaling and its overexpression affects multiple stress tolerance. Plant J. 40, 7587.
  • Kim, S.R., Yang, J.I., Moon, S., Ryu, C.H., An, K., Kim, K.M., Yim, J. and An, G. (2009) Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria. Plant J. 59, 738749.
  • Kotera, E., Tasaka, M. and Shikanai, T. (2005) A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts. Nature, 433, 326330.
  • Kwak, J.M., Mori, I.C., Pei, Z.M., Leonhardt, N., Torres, M.A., Dangl, J.L., Bloom, R.E., Bodde, S., Jones, J.D. and Schroeder, J.I. (2003) NADPH oxidase AtrbohD and AtrbohF genes function in ROS-dependent ABA signaling in Arabidopsis. EMBO J. 22, 26232633.
  • Laby, R.J., Kincaid, M.S., Kim, D. and Gibson, S.I. (2000) The Arabidopsis sugar-insensitive mutants sis4 and sis5 are defective in abscisic acid synthesis and response. Plant J. 23, 587596.
  • Lang, V. and Palva, E.T. (1992) The expression of a rab-related gene, rab18, is induced by abscisic acid during the cold acclimation process of Arabidopsis thaliana (L.) Heynh. Plant Mol. Biol. 20, 951962.
  • Lee, B.H., Lee, H., Xiong, L. and Zhu, J.K. (2002) A mitochondrial complex I defect impairs cold-regulated nuclear gene expression. Plant Cell, 14, 12351251.
  • Lelandais, C., Albert, B., Gutierres, S., De Paepe, R., Godelle, B., Vedel, F. and Chetrit, P. (1998) Organization and expression of the mitochondrial genome in the Nicotiana sylvestris CMSII mutant. Genetics, 150, 873882.
  • Leung, J., Merlot, S. and Giraudat, J. (1997) The Arabidopsis ABSCISIC ACID-INSENSITIVE2 (ABI2) and ABI1 genes encode homologous protein phosphatases 2C involved in abscisic acid signal transduction. Plant Cell, 9, 759771.
  • Liu, Q., Kasuga, M., Sakuma, Y., Abe, H., Miura, S., Yamaguchi-Shinozaki, K. and Shinozaki, K. (1998) Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell, 10, 13911406.
  • De Longevialle, A.F., Meyer, E.H., Andres, C., Taylor, N.L., Lurin, C., Millar, A.H. and Small, I.D. (2007) The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana. Plant Cell, 19, 32563265.
  • De Longevialle, A.F., Hendrickson, L., Taylor, N.L., Delannoy, E., Lurin, C., Badger, M., Millar, A.H. and Small, I. (2008) The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana. Plant J. 56, 157168.
  • Lopez-Molina, L., Mongrand, S. and Chua, N.H. (2001) A postgermination developmental arrest checkpoint is mediated by abscisic acid and requires the ABI5 transcription factor in Arabidopsis. Proc. Natl. Acad. Sci. USA, 98, 47824787.
  • Lurin, C., Andres, C., Aubourg, S. et al. (2004) Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell, 16, 20892103.
  • Ma, Y., Szostkiewicz, I., Korte, A., Moes, D., Yang, Y., Christmann, A. and Grill, E. (2009) Regulators of PP2C phosphatase activity function as abscisic acid sensors. Science, 324, 10641068.
  • Matsuo, M. and Obokata, J. (2006) Remote control of photosynthetic genes by the mitochondrial respiratory chain. Plant J. 47, 873882.
  • Meinhard, M. and Grill, E. (2001) Hydrogen peroxide is a regulator of ABI1, a protein phosphatase 2C from Arabidopsis. FEBS Lett. 508, 443446.
  • Meinhard, M., Rodriguez, P.L. and Grill, E. (2002) The sensitivity of ABI2 to hydrogen peroxide links the abscisic acid-response regulator to redox signalling. Planta, 214, 775782.
  • Meyer, K., Leube, M.P. and Grill, E. (1994) A protein phosphatase 2C involved in ABA signal transduction in Arabidopsis thaliana. Science, 264, 14521455.
  • Meyer, E.H., Tomaz, T., Carroll, A.J., Estavillo, G., Delannoy, E., Tanz, S.K., Small, I.D., Pogson, B.J. and Millar, A.H. (2009) Remodeled respiration in ndufs4 with low phosphorylation efficiency suppresses Arabidopsis germination and growth and alters control of metabolism at night. Plant Physiol. 151, 603619.
  • Miao, Y., Lv, D., Wang, P., Wang, X.C., Chen, J., Miao, C. and Song, C.P. (2006) An Arabidopsis glutathione peroxidase functions as both a redox transducer and a scavenger in abscisic acid and drought stress responses. Plant Cell, 18, 27492766.
  • Munekage, Y., Hojo, M., Meurer, J., Endo, T., Tasaka, M. and Shikanai, T. (2002) PGR5 is involved in cyclic electron flow around photosystem I and is essential for photoprotection in Arabidopsis. Cell, 110, 361371.
  • Murata, Y., Pei, Z.M., Mori, I.C. and Schroeder, J. (2001) Abscisic acid activation of plasma membrane Ca(2+) channels in guard cells requires cytosolic NAD(P)H and is differentially disrupted upstream and downstream of reactive oxygen species production in abi1-1 and abi2-1 protein phosphatase 2C mutants. Plant Cell, 13, 25132523.
  • Nakagawa, N. and Sakurai, N. (2006) A mutation in At-nMat1a, which encodes a nuclear gene having high similarity to group II intron maturase, causes impaired splicing of mitochondrial NAD4 transcript and altered carbon metabolism in Arabidopsis thaliana. Plant Cell Physiol. 47, 772783.
  • Nakashima, K., Fujita, Y., Kanamori, N. et al. (2009) Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy. Plant Cell Physiol. 50, 13451363.
  • Nishimura, N., Sarkeshik, A., Nito, K. et al. (2010) PYR/PYL/RCAR family members are major in-vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis. Plant J. 61, 290299.
  • Nishimura, N., Hitomi, K., Arvai, A.S., Rambo, R.P., Hitomi, C., Cutler, S.R., Schroeder, J.I. and Getzoff, E.D. (2009) Structural mechanism of abscisic acid binding and signaling by dimeric PYR1. Science, 326, 13731379.
  • Noctor, G., Dutilleul, C., De Paepe, R. and Foyer, C.H. (2004) Use of mitochondrial electron transport mutants to evaluate the effects of redox state on photosynthesis, stress tolerance and the integration of carbon/nitrogen metabolism. J. Exp. Bot. 55, 4957.
  • Noctor, G., De Paepe, R. and Foyer, C.H. (2007) Mitochondrial redox biology and homeostasis in plants. Trends Plant Sci. 12, 125134.
  • Okuda, K., Chateigner-Boutin, A.L., Nakamura, T., Delannoy, E., Sugita, M., Myouga, F., Motohashi, R., Shinozaki, K., Small, I. and Shikanai, T. (2009) Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts. Plant Cell, 21, 146156.
  • O’Toole, N., Hattori, M., Andres, C., Iida, K., Lurin, C., Schmitz-Linneweber, C., Sugita, M. and Small, I. (2008) On the expansion of the pentatricopeptide repeat gene family in plants. Mol. Biol. Evol. 25, 11201128.
  • Park, S.Y., Fung, P., Nishimura, N. et al. (2009) Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science, 324, 10681071.
  • Pei, Z.M., Kuchitsu, K., Ward, J.M., Schwarz, M. and Schroeder, J.I. (1997) Differential abscisic acid regulation of guard cell slow anion channels in Arabidopsis wild-type and abi1 and abi2 mutants. Plant Cell, 9, 409423.
  • Perales, M., Eubel, H., Heinemeyer, J., Colaneri, A., Zabaleta, E. and Braun, H.P. (2005) Disruption of a nuclear gene encoding a mitochondrial gamma carbonic anhydrase reduces complex I and supercomplex I + III2 levels and alters mitochondrial physiology in Arabidopsis. J. Mol. Biol. 350, 263277.
  • Pfalz, J., Bayraktar, O.A., Prikryl, J. and Barkan, A. (2009) Site-specific binding of a PPR protein defines and stabilizes 5′ and 3′ mRNA termini in chloroplasts. EMBO J. 28, 20422052.
  • Pogson, B.J., Woo, N.S., Forster, B. and Small, I.D. (2008) Plastid signalling to the nucleus and beyond. Trends Plant Sci. 13, 602609.
  • Priault, P., Fresneau, C., Noctor, G., De Paepe, R., Cornic, G. and Streb, P. (2006) The mitochondrial CMSII mutation of Nicotiana sylvestris impairs adjustment of photosynthetic carbon assimilation to higher growth irradiance. J. Exp. Bot. 57, 20752085.
  • Qin, G., Kang, D. and Dong, Y. (2003) Obtaining and analysis of flanking sequences from T-DNA transformants of Arabidopsis. Plant Sci. 165, 941949.
  • Rao, M.V., Lee, H., Creelman, R.A., Mullet, J.E. and Davis, K.R. (2000) Jasmonic acid signaling modulates ozone-induced hypersensitive cell death. Plant Cell, 12, 16331646.
  • Rentel, M.C., Lecourieux, D., Ouaked, F. et al. (2004) OXI1 kinase is necessary for oxidative burst-mediated signalling in Arabidopsis. Nature, 427, 858861.
  • Rhoads, D.M. and Subbaiah, C.C. (2007) Mitochondrial retrograde regulation in plants. Mitochondrion, 7, 177194.
  • Robbins, J.C., Heller, W.P. and Hanson, M.R. (2009) A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript. RNA, 15, 11421153.
  • Sabar, M., De Paepe, R. and De Kouchkovsky, Y. (2000) Complex I impairment, respiratory compensations, and photosynthetic decrease in nuclear and mitochondrial male sterile mutants of Nicotiana sylvestris. Plant Physiol. 124, 12391250.
  • Santiago, J., Dupeux, F., Round, A., Antoni, R., Park, S.Y., Jamin, M., Cutler, S.R., Rodriguez, P.L. and Marquez, J.A. (2009) The abscisic acid receptor PYR1 in complex with abscisic acid. Nature, 462, 665668.
  • Schmitz-Linneweber, C. and Small, I. (2008) Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci. 13, 663670.
  • Schmitz-Linneweber, C., Williams-Carrier, R.E., Williams-Voelker, P.M., Kroeger, T.S., Vichas, A. and Barkan, A. (2006) A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 pre-mRNA. Plant Cell, 18, 26502663.
  • Strodtkotter, I., Padmasree, K., Dinakar, C. et al. (2009) Induction of the AOX1D isoform of alternative oxidase in A. thaliana T-DNA insertion lines lacking isoform AOX1A is insufficient to optimize photosynthesis when treated with antimycin A. Mol. Plant, 2, 284297.
  • Surpin, M., Larkin, R.M. and Chory, J. (2002) Signal transduction between the chloroplast and the nucleus. Plant Cell, 14(Suppl.), S327S338.
  • Umbach, A.L., Fiorani, F. and Siedow, J.N. (2005) Characterization of transformed Arabidopsis with altered alternative oxidase levels and analysis of effects on reactive oxygen species in tissue. Plant Physiol. 139, 18061820.
  • Uyttewaal, M., Arnal, N., Quadrado, M., Martin-Canadell, A., Vrielynck, N., Hiard, S., Gherbi, H., Bendahmane, A., Budar, F. and Mireau, H. (2008) Characterization of Raphanus sativus pentatricopeptide repeat proteins encoded by the fertility restorer locus for Ogura cytoplasmic male sterility. Plant Cell, 20, 33313345.
  • Vidal, G., Ribas-Carbo, M., Garmier, M., Dubertret, G., Rasmusson, A.G., Mathieu, C., Foyer, C.H. and De Paepe, R. (2007) Lack of respiratory chain complex I impairs alternative oxidase engagement and modulates redox signaling during elicitor-induced cell death in tobacco. Plant Cell, 19, 640655.
  • Woodson, J.D. and Chory, J. (2008) Coordination of gene expression between organellar and nuclear genomes. Nat. Rev. Genet. 9, 383395.
  • Yamaguchi-Shinozaki, K. and Shinozaki, K. (1993) The plant hormone abscisic acid mediates the drought-induced expression but not the seed-specific expression of rd22, a gene responsive to dehydration stress in Arabidopsis thaliana. Mol. Gen. Genet. 238, 1725.
  • Yin, H., Zhang, X., Liu, J., Wang, Y., He, J., Yang, T., Hong, X., Yang, Q. and Gong, Z. (2009) Epigenetic regulation, somatic homologous recombination, and abscisic acid signaling are influenced by DNA polymerase epsilon mutation in Arabidopsis. Plant Cell, 21, 386402.
  • Yu, Q.B., Jiang, Y., Chong, K. and Yang, Z.N. (2009) AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana. Plant J. 59, 10111023.
  • Zehrmann, A., Verbitskiy, D., Van Der Merwe, J.A., Brennicke, A. and Takenaka, M. (2009) A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana. Plant Cell, 21, 558567.
  • Zhang, H., Ohyama, K., Boudet, J., Chen, Z., Yang, J., Zhang, M., Muranaka, T., Maurel, C., Zhu, J.K. and Gong, Z. (2008) Dolichol biosynthesis and its effects on the unfolded protein response and abiotic stress resistance in Arabidopsis. Plant Cell, 20, 18791898.
  • Zhou, X., Hua, D., Chen, Z., Zhou, Z. and Gong, Z. (2009) Elongator mediates ABA responses, oxidative stress resistance and anthocyanin biosynthesis in Arabidopsis. Plant J. 60, 7990.
  • Zsigmond, L., Rigo, G., Szarka, A., Szekely, G., Otvos, K., Darula, Z., Medzihradszky, K.F., Koncz, C., Koncz, Z. and Szabados, L. (2008) Arabidopsis PPR40 connects abiotic stress responses to mitochondrial electron transport. Plant Physiol. 146, 17211737.