SEARCH

SEARCH BY CITATION

References

  • Abascal, F., Zardoya, R. and Posada, D. (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics, 21, 21042105.
  • Alvarez, J. and Smyth, D.R. (2002) CRABS CLAW and SPATULA genes regulate growth and pattern formation during gynoecium development in Arabidopsis thaliana. Int. J. Plant Sci. 163, 1741.
  • Angiosperm Phylogeny Group (2009) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot. J. Linn. Soc. 161, 105121.
  • Balasubramanian, S. and Schneitz, K. (2000) NOZZLE regulates proximal–distal pattern formation, cell proliferation and early sporogenesis during ovule development in Arabidopsis thaliana. Development, 127, 42274238.
  • Balasubramanian, S. and Schneitz, K. (2002) NOZZLE links proximal–distal and adaxial–abaxial pattern formation during ovule development in Arabidopsis thaliana. Development, 129, 42914300.
  • Beerling, D.J. and Fleming, A.J. (2007) Zimmermann’s telome theory of megaphyll leaf evolution: a molecular and cellular critique. Curr. Opin. Plant Biol. 10, 412.
  • Bowman, J.L. (2000) The YABBY gene family and abaxial cell fate. Curr. Opin. Plant Biol. 3, 1722.
  • Bowman, J.L. and Smyth, D.R. (1999) CRABS CLAW, a gene that regulates carpel and nectary development in Arabidopsis, encodes a novel protein with zinc finger and helix-loop-helix domains. Development, 126, 23872396.
  • Bowman, J.L., Eshed, Y. and Baum, S.F. (2002) Establishment of polarity in angiosperm lateral organs. Trends Genet. 18, 134141.
  • Cong, B., Barrero, L.S. and Tanksley, S.D. (2008) Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication. Nat. Genet. 40, 800804.
  • Crane, P.R. (1985) Phylogenetic analysis of seed plants and the origin of angiosperms. Ann. Mo. Bot. Gard. 72, 716793.
  • Cronk, Q.C.B. (2001) Plant evolution and development in a post-genomic context. Nat. Rev. Genet. 2, 607619.
  • Dai, M., Hu, Y., Zhao, Y., Liu, H. and Zhou, D.Z. (2007) A WUSCHEL-like homeobox gene represses a YABBY gene expression required for rice leaf development. Plant Physiol. 144, 380390.
  • Doyle, J.A. and Donoghue, M.J. (1986) Seed plant phylogeny and the origin of angiosperms: an experimental cladistic approach. Bot. Rev. 52, 321431.
  • Drummond, A.J. and Rambaut, A. (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7, 214.
  • Endress, P.K. (1983) The early floral development of Austrobaileya. Bot. Jahrb. Syst. Pflanzengesch. Pflanzengeogr. 103, 481497.
  • Endress, P.K. (2001) The flowers in basal extant angiosperms and inferences on ancestral flowers. Int. J. Plant Sci. 162, 11111140.
  • Endress, P.K. (2005) Carpels in Brasenia (Cabombaceae) are completely ascidiate despite a long stigmatic crest. Ann. Bot. 96, 209215.
  • Eshed, Y., Baum, S.F. and Bowman, J.L. (1999) Distinct mechanisms promote polarity establishment in carpels of Arabidopsis. Cell, 99, 199209.
  • Eshed, Y., Izhaki, A., Baum, S.F., Floyd, S.K. and Bowman, J.L. (2004) Asymmetric leaf development and blade expansion in Arabidopsis are mediated by KANADI and YABBY activities. Development, 131, 29973006.
  • Fernandez, L., Torregrosa, L., Terrier, N., Sreekantan, L., Grimplet, J., Davies, C., Thomas, M.R., Romieu, C. and Ageorges, A. (2007) Identification of genes associated with flesh morphogenesis during grapevine fruit development. Plant Mol. Biol. 63, 307323.
  • Floyd, S.K. and Bowman, J.L. (2006) Distinct developmental mechanisms reflect the independent origins of leaves in vascular plants. Curr. Biol. 16, 19111917.
  • Floyd, S.K. and Bowman, J.L. (2007) The ancestral developmental tool kit of land plants. Int. J. Plant Sci. 168, 135.
  • Floyd, S.K. and Bowman, J.L. (2010) Gene expression patterns in seed plant shoot meristems and leaves: homoplasy or homology? J. Plant. Res. 123, 4355.
  • Floyd, S.K., Zalewski, C.S. and Bowman, J.L. (2006) Evolution of class III homeodomain–leucine zipper genes in streptophytes. Genetics, 173, 373388.
  • Fourquin, C., Vinauger-Douard, M., Fogliani, B., Dumas, C. and Scutt, C.P. (2005) Evidence that CRABS CLAW and TOUSLED have conserved their roles in carpel development since the ancestor of the extant angiosperms. Proc. Natl Acad. Sci. USA, 102, 46494654.
  • Garcia, D., Collier, S.A., Byrne, M.E. and Martienssen, R.A. (2006) Specification of leaf polarity in Arabidopsis via trans-acting siRNA pathway. Curr. Biol. 16, 933938.
  • Gleissberg, S., Groot, E.P., Schmalz, M., Eichert, M., Kölsch, A. and Hutter, S. (2005) Developmental events leading to peltate leaf structure in Tropaeolum majus (Tropaeolaceae) are associated with expression domain changes of a YABBY gene. Dev. Genes. Evol. 215, 313319.
  • Golz, J.F., Roccaro, M., Kuzoff, R. and Hudson, A. (2004) GRAMINIFOLIA promotes growth and polarity of Antirrhinum leaves. Development, 131, 36613670.
  • Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W. and Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307321.
  • Ishikawa, M., Ohmori, Y., Tanaka, W., Hirabayashi, C., Ogihara, Y., Yamaguchi, T. and Hirano, H.Y. (2009) The spatial expression patterns of DROOPING LEAF orthologs suggest a conserved function in grasses. Genes Genet. Syst. 84, 137146.
  • Juarez, M.T., Kui, J.S., Thomas, J., Heller, B.A. and Timmermans, M.C.P. (2004a) microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity. Nature, 428, 8488.
  • Juarez, M.T., Twigg, R.W. and Timmermans, M.C.P. (2004b) Specification of adaxial cell fate during maize leaf development. Development, 131, 45334544.
  • Kato, M. (1991) Further comments on an ophioglossoid archetype for the angiosperm carpel: ovular paedomorphosis. Taxon, 40, 189194.
  • Kelley, D.R., Skinner, D.J. and Gasser, C.S. (2009) Roles of polarity determinants in ovule development. Plant J. 57, 10541064.
  • Kidner, C.A. and Timmermans, M.C.P. (2007) Mixing and matching pathways in leaf polarity. Curr. Opin. Plant Biol. 10, 1320.
  • Kim, M., Pham, T., Hamidi, A., McCormick, S., Kuzoff, R.K. and Sinha, N. (2003) Reduced leaf complexity in tomato wiry mutants suggests a role for PHAN and KNOX genes in generating compound leaves. Development, 130, 44054415.
  • Lee, J.Y., Baum, S.F., Alvarez, J., Patel, A., Chitwood, D.H. and Bowman, J.L. (2005a) Activation of CRABS CLAW in the nectaries and carpels of Arabidopsis. Plant Cell, 17, 2536.
  • Lee, J.Y., Baum, S.F., Oh, S.H., Jiang, C.Z., Chen, J.C. and Bowman, J.L. (2005b) Recruitment of CRABS CLAW to promote nectary development within the eudicot clade. Development, 132, 50215032.
  • Li, H., Xu, L., Wang, H., Yuan, Z., Cao, X., Yang, Z., Zhang, D., Xu, Y. and Huang, H. (2005) The putative RNA-dependent RNA polymerase RDR6 acts synergistically with ASYMMETRIC LEAVES1 and 2 to repress BREVIPEDICELLUS and microRNA 165/166 in Arabidopsis leaf development. Plant Cell, 17, 21572171.
  • Lora, J., Hormaza, J.I., Herrero, M. and Gasser, C.S. (2011) Seedless fruits and the disruption of a conserved genetic pathway in angiosperm ovule development. Proc. Natl Acad. Sci. USA, 108, 54615465.
  • McAbee, J.M., Kuzoff, R.K. and Gasser, C.S. (2005) Mechanisms of derived unitegmy among Impatiens species. Plant Cell, 17, 16741684.
  • Meister, R.J., Kotow, L.M. and Gasser, C.S. (2002) SUPERMAN attenuates positive INNER NO OUTER autoregulation to maintain polar development of Arabidopsis ovule outer integuments. Development, 129, 42814289.
  • Nakayama, H., Yamaguchi, T. and Tsukaya, H. (2010) Expression patterns of AaDL, a CRABS CLAW ortholog in Asparagus asparagoides (Asparagaceae), demonstrate a stepwise evolution of CRC/DL subfamily of YABBY genes. Am. J. Bot. 97, 591600.
  • Nishiyama, T., Fujita, T., Shin-I, T. et al. (2003) Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution. Proc. Natl Acad. Sci. USA, 100, 80078012.
  • Orashakova, S., Lange, M., Lange, S., Wege, S. and Becker, A. (2009) The CRABS CLAW ortholog from California poppy (Eschscholzia californica, Papaveraceae), EcCRC, is involved in floral meristem termination, gynoecium differentiation and ovule initiation. Plant J. 58, 682693.
  • Saarela, J.M., Rai, H.S., Doyle, J.A., Endress, P.K., Mathews, S., Marchant, A.D., Briggs, B.G. and Graham, S.W. (2007) Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree. Nature, 446, 312315.
  • Sarojam, R., Sappl, P.G., Goldshmidt, A., Efroni, I., Floyd, S.K., Eshed, Y. and Bowman, J.L. (2010) Differentiating Arabidopsis shoots from leaves by combined YABBY activities. Plant Cell, 22, 21132130.
  • Sawa, S., Ito, T., Shimura, Y. and Okada, K. (1999) FILAMENTOUS FLOWER controls the formation and development of Arabidopsis inflorescences and floral meristems. Plant Cell, 11, 6986.
  • Siegfried, K.R., Eshed, Y., Baum, S.F., Otsuga, D., Drews, G.N. and Bowman, J.L. (1999) Members of the YABBY gene family specify abaxial cell fate in Arabidopsis. Development, 126, 41174128.
  • Stebbins, G.L. (1974) Flowering Plants: Evolution above the Species Level. Cambridge, MA: Belknap Press of Harvard University Press.
  • Stewart, W.N. and Rothwell, G.W. (1993) Paleobotany and the Evolution of Plants, 2nd edn. New York: Cambridge University Press.
  • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. and Higgins, D.G. (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 48764882.
  • Tomescu, A.M.F. (2009) Megaphylls, microphylls and the evolution of leaf development. Trends Plant Sci. 14, 512.
  • Toriba, T., Harada, K., Takamura, A., Nakamura, H., Ichikawa, H., Suzuki, T. and Hirano, H.Y. (2007) Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1. Mol. Genet. Genomics, 277, 457468.
  • Turlier, M.F. (1984) Organogenèse foliaire commençante chez les Dicotylédones hétérophylles: cas du Cabomba aquatica DC. (Nymphéacées). Bull. Soc. Bot. Fr. Lett. Bot. 131, 301314.
  • Villanueva, J.M., Broadhvest, J., Hauser, B.A., Meister, R.J., Schneitz, K. and Gasser, C.S. (1999) INNER NO OUTER regulates abaxial–adaxial patterning in Arabidopsis ovules. Genes Dev. 13, 31603169.
  • Watanabe, K. and Okada, K. (2003) Two discrete cis elements control the abaxial side-specific expression of the FILAMENTOUS FLOWER gene in Arabidopsis. Plant Cell, 15, 25922602.
  • Yamada, T., Imaichi, R. and Kato, M. (2001) Developmental morphology of ovules and seeds of Nymphaeales. Am. J. Bot. 88, 963974.
  • Yamada, T., Ito, M. and Kato, M. (2003) Expression pattern of INNER NO OUTER homologue in Nymphaea (water lily family, Nymphaeaceae). Dev. Genes. Evol. 213, 510513.
  • Yamada, T., Ito, M. and Kato, M. (2004) YABBY2-homologue expression in lateral organs of Amborella trichopoda (Amborellaceae). Int. J. Plant Sci. 165, 917924.
  • Yamada, T., Hirayama, Y., Imaichi, R. and Kato, M. (2008) AINTEGUMENTA homolog expression in Gnetum (gymnosperms) and implications for the evolution of ovulate axes in seed plants. Evol. Dev. 10, 280287.
  • Yamaguchi, T., Nagasawa, N., Kawasaki, S., Matsuoka, M., Nagato, Y. and Hirano, H.Y. (2004) The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa. Plant Cell, 16, 500509.
  • Yan, J., Cai, X., Luo, J. et al. (2010) The REDUCED LEAFLET genes encode key components of the trans-acting small interfering RNA pathway and regulate compound leaf and flower development in Lotus japonicus. Plant Physiol. 152, 797807.
  • Zhao, W., Su, H.Y., Song, J., Zhao, X.Y. and Zhang, X.S. (2006) Ectopic expression of TaYAB1, a member of YABBY gene family in wheat, causes the partial abaxialization of the adaxial epidermises of leaves and arrests the development of shoot apical meristem in Arabidopsis. Plant Sci. 170, 364371.