These authors equally contributed to this work.
A genome-wide phylogenetic reconstruction of family 1 UDP-glycosyltransferases revealed the expansion of the family during the adaptation of plants to life on land
Article first published online: 28 DEC 2011
© 2011 The Authors. The Plant Journal © 2011 Blackwell Publishing Ltd
The Plant Journal
Volume 69, Issue 6, pages 1030–1042, March 2012
How to Cite
Caputi, L., Malnoy, M., Goremykin, V., Nikiforova, S. and Martens, S. (2012), A genome-wide phylogenetic reconstruction of family 1 UDP-glycosyltransferases revealed the expansion of the family during the adaptation of plants to life on land. The Plant Journal, 69: 1030–1042. doi: 10.1111/j.1365-313X.2011.04853.x
- Issue published online: 16 MAR 2012
- Article first published online: 28 DEC 2011
- Accepted manuscript online: 12 NOV 2011 11:07AM EST
- Received 14 September 2011; revised 8 November 2011; accepted 9 November 2011; published online 28 December 2011.
Figure S1. Alignment of the PSPG motif of the C.reinhardtii UGT and some UGTs from P. patens and S. moellendorfii.
Figure S2. Web logos representing the PSPG motif of phylogenetic groups A-D, F-J, M, N and P. The stars indicate the residues interacting directly with the UDP-sugar based on available crystal structures. Logos were generated using the WebLogo application available at HThttp://weblogo.berkeley.eduTH (Crooks et al., 2004).
Figure S3. Alignment of the PSPG motif of plant UDP-galactosyltransferases.
Figure S4. Alignment of UGT80 clade sequences from different plant species.
Figure S5. Alignment of UGT81 clade sequences from different plant species.
Figure S6. Phylogenetic tree showing the UGT clades 80 and 81 in different plant species.
Table 1. Gene identification numbers of the sequences used in the phylogenetic reconstruction. Arabidopsis UGTs are available at the Arabidopsis Cytochrome P450, Cytochrome bB5B, P450 Reductase, β-Glucosidase and Glycosyltransferase site (HTwww.p450.kvl.dkTH); Malus domestica UGTs were identified in the Genome Database for Rosaceae (HTwww.rosaceae.orgTH); all the other sequences were retrieved from the Phytozome 5.0 database.
Table 2. Putative sterol/lipid UGTs identified in the different plant species.
As a service to our authors and readers, this journal provides supporting information supplied by the authors. Such materials are peer-reviewed and may be re-organized for online delivery, but are not copy-edited or typeset. Technical support issues arising from supporting information (other than missing files) should be addressed to the authors.
|TPJ_4853_sm_FigS1.tif||466K||Supporting info item|
|TPJ_4853_sm_FigS2.tif||1213K||Supporting info item|
|TPJ_4853_sm_FigS3.tif||371K||Supporting info item|
|TPJ_4853_sm_FigS4.tif||9246K||Supporting info item|
|TPJ_4853_sm_FigS5.tif||7925K||Supporting info item|
|TPJ_4853_sm_FigS6.tif||14750K||Supporting info item|
|TPJ_4853_sm_SupplInfoLegends.doc||28K||Supporting info item|
|TPJ_4853_sm_TableS1.doc||50K||Supporting info item|
|TPJ_4853_sm_TableS2.doc||44K||Supporting info item|
Please note: Wiley Blackwell is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.