BiolFlor — a new plant-trait database as a tool for plant invasion ecology
Article first published online: 6 SEP 2004
Diversity and Distributions
Volume 10, Issue 5-6, pages 363–365, September 2004
How to Cite
(2004), BiolFlor — a new plant-trait database as a tool for plant invasion ecology. Diversity and Distributions, 10: 363–365. doi: 10.1111/j.1366-9516.2004.00106.x
- Issue published online: 6 SEP 2004
- Article first published online: 6 SEP 2004
Many studies focus on traits of invasive species as a step towards a better prediction of invasions (e.g. Noble, 1989; Mack, 1992; Pyšek et al., 1995; Tucker & Richardson, 1995; Crawley et al., 1996; Rejmánek & Richardson, 1996; Williamson & Fitter, 1996; Reichard & Hamilton, 1997; Daehler, 1998; Pyšek, 1998; Goodwin et al., 1999; Grotkopp et al., 2002; Prinzing et al., 2002).
Despite some progress, a predictive framework for predicting invasiveness remains illusive, except for the fact that being invasive elsewhere, having a broad native range, and exhibiting rapid dispersal suggest a high risk of invasiveness (e.g. Williamson, 1996; Alpert et al., 2000; Heger & Trepl, 2003). Indeed, whether a robust predictive framework is possible for plant invasion ecology is controversial (Lodge, 1993; Smith et al., 1999; Williamson, 1999; but see Rejmánek et al., 2004). One promising approach is to compare successful and unsuccessful invaders from a source area from which species were introduced into a target region (Prinzing et al., 2002; Pyšek et al., 2004b). This means that the source species pool from which invading species originate is the object of analysis rather than the flora of the target area. For all these kinds of analyses, the definition of the correct species pool is crucial (Cassey et al., 2004; Pyšek et al., 2004b).
The source pool of species may often be unknown. Even if the species pool is known, the traits of many species are often unknown. However, many invasive species across temperate regions of the world are of Central European origin (e.g. Crosby, 1986; di Castri, 1989; Roy et al., 1998; Kalin Arroyo et al., 2000; Richardson et al., 2000a; Prinzing et al., 2002; Pauchard & Alaback, 2004; Villasenor & Espinosa-Garcia, 2004). The flora of Central Europe is thus a very important source species pool for the analysis of traits of invasive species (Pyšek et al., 2004b). A new database that is available for such analyses was released recently as a book and CD-ROM: ‘BiolFlor’— a database on biological and ecological traits of the vascular flora of Germany (Klotz et al., 2002). A beta version of BiolFlor (in English and German) is now available on the Internet (see below). The flora of Germany covers the majority of Central European plant species, and BiolFlor is the most comprehensive database of Central European plant species traits. We therefore consider BiolFlor to be a valuable tool for identifying traits related to invasiveness by defining the appropriate species pool.
Content of BiolFlor
BiolFlor has more than 450,000 records and covers 3659 species. The species are classified into natives and aliens; aliens are divided according to their residence status into archaeophytes (introduced to Germany before 1500) and neophytes (introduced to Germany after 1500) and according to their degree of naturalization into casuals (which do not form self-replacing populations) and naturalized plants (which sustain self-replacing populations) (Richardson et al., 2000b; Pyšek et al., 2004a). The German flora comprises of 2743 natives, 40 uncertain archaeophytes (i.e. they also might be native), 218 archaeophytes and 470 naturalized neophytes (according to BiolFlor). Furthermore, information on 185 casual neophytes is provided.
We included all species in BiolFlor that are native to Germany or that are naturalized according to Wisskirchen & Haeupler (1998) or Schubert & Vent (1990). Additionally, BiolFlor contains frequent casual species. These are species which are repeatedly introduced and grow in several locations in Germany outside of cultivation. BiolFlor thus excludes most of the > 12,000 species known to have been introduced to Germany (Sukopp, 1976) but that rarely occur in the wild. An extensive synonymy is provided (using Wisskirchen & Haeupler, 1998).
The 66 different traits included in BiolFlor are outlined in Appendix S1. Most of the traits were compiled from the literature. However, traits like morphological parameters, leaf characteristics, and seed traits were mostly measured by our collaborators.
Each of these traits may have several states, i.e. the actual specification of the trait ‘pollen vector’ might be ‘insects’, ‘wind’, etc. For most of the species attributes (species with their characteristic trait state) we also provide qualifiers that may provide further information, e.g. whether a state of a trait is rare or common, or whether the information on a species range refers to its natural or anthropogenic range, etc. For more recently sourced data, we also provide the source of information of a specific record.
One important trait in BiolFlor is the ‘phylogeny’. We compiled a phylogenetic supertree for all species included from more than 200 sources. The phylogeny is compatible with CAIC (Purvis & Rambaut, 1995), facilitating statistical analyses of phylogenetic independent contrasts (e.g. Felsenstein, 1985; Burt, 1989; Harvey & Pagel, 1991).
Although the publication by Klotz et al. (2002) is in German, all chapters have an English summary, table and figures have English captions, and all traits are listed in English.
Options of BiolFlor
Users can get an overview of the database, i.e. they are able to browse through families, genera and species and explore all data on traits that are available for a particular species. Furthermore it is possible to get an overview of all groups of traits and singular traits including their states, data types and definitions. Database entries displayed are usually cross referenced to the traits definition for easier use.
Search options include the ability to search for a species by name or (combinations of) traits. All species that match the search criteria can be transferred to a ‘species cart’. The resulting search (species and traits) can be exported in a format which can be easily imported into most statistical packages or spreadsheet programs. Moreover, search criteria themselves can also be saved. Searches can also be restricted to a predefined species list (e.g. local species pool) which can be imported into the species cart. The species cart itself can be modified, saved and reloaded.
Updates of BiolFlor are planned to extend the numbers of traits and also the coverage of species. Pyšek (2003) suggested that BiolFlor could also be applied to cover a wider geographical range.
Besides analysing traits associated with invasiveness, BiolFlor can be used in many other contexts such as deriving functional groups, calculating functional diversity or mapping the distribution of such traits with subsequent analyses. For example, Fig. 1 shows the proportion (as quintiles) of aliens (a) and annuals (b) within the German flora per grid cell using distributional data not included in BiolFlor. Alien species are overrepresented in industrial areas in the West, South-west and East of Germany, along major rivers and the richest agricultural areas. They are underrepresented in mountain ranges. The pattern of annual species is strikingly similar but has another focal area along the North Sea Coast (which is influenced by tides). The correlation of the proportions (r = 0.6) between both traits is highly significant (P < 0.001) even after correcting for spatial autocorrelation (Dutilleul, 1993). Annuals and aliens positively react on natural and anthropogenic disturbances, c. 37% of aliens are annuals.
BiolFlor is published by the German Federal Agency for Nature Conservation and can be obtained from ‘Landwirtschaftsverlag Hiltrup’ (http://www.lv-h.com/bfnen). The Internet version is available at http://www.biolflor.de.
We thank Dave Richardson and an anonymous referee for very valuable comments on an earlier version of the manuscript. The compilation of BiolFlor would have been impossible without the help of many colleagues: Gottfried Briemle, Henning Haeupler, Anselm Krumbiegel, Lothar Nitsche, Sieglinde Nitsche, Berit Otto, Andreas Prinzing, Annette Trefflich. BiolFlor was programmed by ThinkConnection and PAN Partnerschaft (both in Munich). The collation of data in BiolFlor and the Internet publication were funded by the UFZ — Centre for Environmental Research Leipzig-Halle. The publication of the BiolFlor book and the programming of the accompanying CD-ROM were funded by the Federal Agency for Nature Conservation (Hans Fink and Rudolf May). This agency also provided FLORKART, the database on plant distributions in Germany. Sarah Gwillym improved our English.
The following material is available from http://www.blackwellpublishing.com/products/journals/suppmat/DDI/DDI106/DDI106sm.htm
Appendix S1 Traits included in BiolFlor.
Ingolf Kühn ,* Walter Durka and Stefan Klotz UFZ — Centre for Environmental Research Leipzig-Halle, Department Community Ecology, Theodor-Lieser-Str. 4, 06120 Halle, Germany. E-mail: firstname.lastname@example.org
- 2000) Invasiveness, invasibility and the role of environmental stress in the spread of non-native plants. Perspectives in Plant Ecology, Evolution and Systematics, 3, 52–66. , & (
- 1989) Comparative methods using phylogenetically independent contrasts. Oxford surveys in evolutionary biology (ed. by P.H.Harvey and L.Partridge), pp. 33–53. Oxford University Press, Oxford. (
- 2004) Mistakes in the analysis of exotic species establishment: source pool designation and correlates of introduction success among parrots (Aves: Psittaciformes) of the world. Journal of Biogeography, 31, 277–284. , , & (
- 1989) History of biological invasions with special emphasis on the Old World. Biological invasions: a global perspective (ed. by J.A.Drake, H.A.Mooney, F.Di Castri, R.H.Groves, F.J.Kruger, M.Rejmánek and M.Williamson), pp. 1–30. SCOPE 37. Wiley & Sons, Chichester, UK. (
- 1996) Comparative ecology of the native and alien floras of the British Isles. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences, 351, 1251–1259. , & (
- 1986) Ecological imperialism: the biological expansion of Europe, 900–1900. Cambridge University Press, Cambridge, UK. (
- 1998) The taxonomic distribution of invasive angiosperm plants: ecological insights and comparison to agricultural weeds. Biological Conservation, 84, 167–180. (
- 1993) Modifying the t-test for assessing the correlation between two spatial processes. Biometrics, 49, 305–314. (
- 1985) Phylogenies and the comparative method. American Naturalist, 125, 1–15. (
- 1999) Predicting invasiveness of plant species based on biological information. Conservation Biology, 13, 422–426. , & (
- 2002) Toward a causal explanation of plant invasiveness: seedling growth and life-history strategies of 29 pine (Pinus) species. American Naturalist, 159, 396–419. , & (
- 1991) The comparative method in evolutionary biology. Oxford University Press, Oxford. & (
- 2003) Predicting biological invasions. Biological Invasions, 5, 313–321. & (
- 2000) Plant invasions in Chile: present patterns and future predictions. Invasive species in a changing world (ed. by H.A.Mooney and R.J.Hobbs), pp. 385–421. Island Press, Washington, CD, USA. , , & (
- 2002) BIOLFLOR — Eine Datenbank zu biologisch-ökologischen Merkmalen der Gefäßpflanzen in Deutschland. Schriftenreihe für Vegetationskunde, 38. Bundesamt für Naturschutz, Bonn. , & , ed. (
- 2003) Life-history traits of the northwest European flora: the LEDA database. Journal of Vegetation Science, 14, 611–614. , , & (
- 1993) Biological invasions: lessons for ecology. Trends in Ecology and Evolution, 8, 133–136. (
- 1992) Characteristics of invading plant species. Alien plant invasions in native ecosystems of Hawaii, management and research (ed. by C.P.Stone, C.W.Smith and J.T.Tunison), pp. 42–46. University of Hawaii Press, Honolulu, Hawaii. (
- 1989) Attributes of invaders and the invading process: terrestrial and vascular plants. Biological invasions: a global perspective (ed. by J.A.Drake, H.A.Mooney, F.Di Castri, R.H.Groves, F.J.Kruger and M.Rejmánek), pp. 301–313. John Wiley & Sons, Chichester, UK. (
- 2004) Influence of elevation, land use, and landscape context on patterns of alien plant invasions along roadsides in protected areas of south-central Chile. Conservation Biology, 18, 238–248. & (
- 2002) Which species become aliens? Evolutionary Ecology Research, 4, 385–405. , , & (
- 1995) Comparative analysis by independent contrasts (CAIC): an Apple Macintosh application for analysing comparative data. CABIOS, 11, 247–251. & (
- 1998) Is there a taxonomic pattern to plant invasions? Oikos, 82, 282–294. (
- 2003) How reliable are data on alien species in Flora Europaea? Flora, 198, 499–507. (
- 1995) Relating invasion success to plant traits: an analysis of the Czech alien flora. Plant invasions: general aspects and special problems (ed. by P.Pyšek, K.Prach, M.Rejmánek and M.Wade), pp. 39–60. SPB Academic Publishing, Amsterdam. , & (
- 2004a) Alien plants in checklists and floras: towards better communication between taxonomists and ecologists. Taxon, 53, 131–143. , , , , & (
- 2004b) Predicting and explaining plant invasions through analysis of source area floras: some critical considerations. Diversity and Distributions, 10, 179–187. , & (
- 1997) Predicting invasions of woody plants introduced into North America. Conservation Biology, 11, 193–203. & (
- 1996) What attributes make some plant species more invasive? Ecology, 77, 1655–1661. & (
- 2004) Plant invasion ecology: state of the art. Invasive alien species: a new synthesis (ed. by H.A.Mooney, R.N.Mack, J.A.McNeely, L.Neville, P.J.Schei and J.Waage), Island Press, Washington, DC, USA. in press. , , , & (
- 2000a) Invasive alien species and global change: a South African perspective. Invasive species in a changing world (ed. by H.A.Mooney and R.J.Hobbs), pp. 303–349. Island Press, Washington, DC, USA. , , , , , , , , & (
- 2000b) Naturalization and invasion of alien plants: concepts and definitions. Diversity and Distributions, 6, 93–107. , , , , & (
- 1998) An illustrated guide to common weeds of New Zealand. New Zealand Plant Protection Society, Canterbury, NZ. , , , & (
- 1990) Rothmaler, Exkursionsflora von Deutschland. Kritischer Band, Vol. 4. Volk und Wissen, Berlin. & (
- 1999) When to ignore advice: invasion predictions and decision theory. Biological Invasions, 1, 89–96. , & (
- 1976) Dynamik und Konstanz in der Flora der Bundesrepublik Deutschland. Schriftenreihe für Vegetationskunde, 10, 9–26. (
- 1995) An expert system for screening potentially invasive alien plants in South African Fynbos. Journal of Environmental Management, 44, 309–338. & (
- 2004) The alien flowering plants of Mexico. Diversity and Distributions, 10, 113–123. & (
- 1996) Biological invasions. Chapman & Hall, London. (
- 1999) Invasions. Ecography, 22, 5–12. (
- 1996) The varying success of invaders. Ecology, 77, 1661–1666. & (
- 1998) Standardliste der Farn- und Blütenpflanzen Deutschlands. Ulmer, Stuttgart. & (
Appendix S1. Traits included in BiolFlor. Most of the traits are available for most of the species; however some traits (e.g. "mode of introduction", "Heterostyly", or "grassland utilization values") are not applicable for all of the species. For some other (often measured) traits, there may be some gaps (e.g. seed weight and shape).
|DDI_106_sm_appendix.doc||127K||Supporting info item|
Please note: Wiley Blackwell is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.