SEARCH

SEARCH BY CITATION

References

  • Allendorf, F. 1986. Genetic drift and the loss of alleles versus heterozygosity. Zoo Biol. 5: 181190.
  • Bell, B.D., Daugherty, C.H. & Hay, J.M. 1998. Leiopelma pakeka, n. sp. (Anura: Leiopelmatidae), a cryptic species of frog from Maud Island, New Zealand, and a reassessment of the conservation status of L. hamiltoni from Stephens Island. J. R. Soc. N. Z. 28: 3954.
  • Bensch, S., Price, T. & Kohn, J. 1997. Isolation and characterization of microsatellite loci in a Phylloscopus warbler. Mol. Ecol. 6: 9192.
  • Boessenkool, S., Taylor, S.S., Tepolt, C.K., Komdeur, J. & Jamieson, I.G. 2006. Bottlenecks affect genetic variation in South Island robins: comparing isolated mainland populations with those on offshore islands. Conserv. Genet., DOI: 10.1007/s10592-006-9219-5.
  • Bouzat, J.L., Lewin, H.A. & Paige, K.N. 1998. The ghost of genetic diversity past: historical DNA analysis of the greater prairie chicken. Am. Nat. 152: 16.
  • Bull, P.C., Gaze, P.D. & Robertson, C.J.R. 1985. The Atlas of Bird Distribution in New Zealand. The Ornithological Society of New Zealand, Wellington.
  • Burch, C.L. & Chao, L. 1999. Evolution by small steps and rugged landscapes in the RNA virus 6. Genetics 151: 921927.
  • Burger, R. & Lynch, M. 1995. Evolution and extinction in a changing environment: a quantitative-genetic analysis. Evolution 49: 151163.
  • Coltman, D.W., Pilkington, J.G., Smith, J.A. & Pemberton, J.M. 1999. Parasite-mediated selection against inbred Soay sheep in a free-living, island population. Evolution 53: 12591267.
  • Crnokrak, P. & Roff, D.A. 1999. Inbreeding depression in the wild. Heredity 83: 260270.
  • Culver, M., Johnson, W.E., Pecon-Slattery, J. & O'Brien, S.J. 2000. Genomic ancestry of the American puma (Puma concolor). J. Hered. 91: 186197.
  • Dowling, D.K., Adcock, G.J. & Mulder, R.A. 2003. Novel polymorphic microsatellite markers for paternity analysis in the red-capped robin (Petroica goodenovii: aves). Mol. Ecol. Notes 3: 517519.
  • Duncan, P.J., Webb, P.I. & Palmeirin, J.M. 1999. Distribution of New Zealand robins within a forest mosaic. Emu 99: 222226.
  • El Mousadik, A. & Petit, R.J. 1996. High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theor. Appl. Genet. 92: 832839.
  • Eldridge, M.D.B., Kinnear, J.E., Zenger, K.R., McKenzie, L.M. & Spencer, P.B.S. 2004. Genetic diversity in remnant mainland and ‘‘pristine’’ island populations of three endemic Australian macropodids (Marsupialia): Macropus eugenii, Lagorchestes hirsutus and Petrogale lateralis. Conserv. Genet. 5: 325338.
  • Ellegren, H., Mikko, S., Wallin, K. & Andersson, L. 1996. Limited polymorphism at major histocompatibility complex (MHC) loci in the Swedish moose A. alces. Mol. Ecol. 5: 39.
  • Fuerst, P.A. & Maruyama, T. 1986. Considerations on the conservation of alleles and of genic heterozygosity in small managed populations. Zoo Biol. 5: 171179.
  • Garza, J.C. & Williamson, E.G. 2001. Detection of reduction in population size using data from microsatellite data. Mol. Ecol. 10: 305318.
    Direct Link:
  • Gibbs, M., Dawson, D.A., McCamley, C., Wardle, A.F., Armour, J.A.L. & Burke, T. 1997. Chicken microsatellite markers isolated from libraries enriched for simple tandem repeats. Anim. Genet. 28: 401417.
  • Glenn, T.C., Stephan, W. & Braun, M.J. 1999. Effects of a population bottleneck on whooping crane mitochondrial DNA variation. Conserv. Biol. 13: 10971107.
  • Goudet, J. 1995. FSTAT (version 1.2): a computer program to calculate F-statistics. J. Hered. 86: 485486.
  • Groombridge, J.J., Jones, C.G., Bruford, M.W. & Nichols, R.A. 2000. ‘Ghost’ alleles of the Mauritius kestrel. Nature 403: 616.
  • Hadly, E.A., Tuinen, M.v., Chan, Y. & Heiman, K. 2003. Ancient DNA evidence of prolonged population persistence with negligible genetic diversity in an endemic tuco-tuco (Ctenomys sociabilis). J. Mammal. 84: 403417.
  • Hanotte, O., Zanon, C., Pugh, A., Greig, C., Dixon, A. & Burke, T. 1994. Isolation and characterization of microsatellite loci in a passerine bird: the reed bunting Emberiza schoeniclus. Mol. Ecol. 3: 529530.
  • Hansson, B., Bensch, S., Hasselquist, D. & Akesson, M. 2001. Microsatellite diversity predicts recruitment of sibling great reed warblers. Proc. R. Soc. B. 268: 12871291.
  • Hay, J.M., Daugherty, C.H., Cree, A. & Maxson, L.R. 2003. Low genetic divergence obscures phylogeny among populations of Sphenodon, remnant of an ancient reptile lineage. Mol. Phylogenet. Evol. 29: 119.
  • Heather, B. & Robertson, H. 1996. The Field Guide to the Birds of New Zealand. Viking, Auckland.
  • Hedrick, P.W. 1994. Purging inbreeding depression and the probability of extinction: full-sib mating. Heredity 73: 363372.
  • Higgins, P.J. & Peter, J.M. eds, 2002. Handbook of Australian, New Zealand and Antarctic birds. Volume 6: Pardalotes to shrike-thrushes. Oxford University Press, Melbourne, 1225 pp.
  • Higgins, P.J., Peter, J.M. & Cowling, S.J. eds, 2006. Handbook of Australian, New Zealand and Antarctic birds. Volume 7: Boatbill to starlings. Oxford University Press, Melbourne, 1055 pp.
  • Hitchings, S.P. & Beebee, T.J.C. 1996. Persistence of British natterjack toad Bufo calamita Laurenti (Anura: Bufonidae) populations despite low genetic diversity. Biol. J. Linn. Soc. 57: 6980.
  • Hoelzel, A.R. 1999. Impact of population bottlenecks on genetic variation and the importance of life-history; a case study of the northern elephant seal. Biol. J. Linn. Soc. 68: 2339.
  • Hofkin, B.V., Wright, A., Altenbach, J., Rassmann, K., Snell, H.M., Miller, R.D., Stone, A.C. & Snell, H.L. 2003. Ancient DNA gives green light to Galápagos land iguana repatriation. Conserv. Genet. 4: 105108.
  • Holyoake, A., Waldman, B. & Gemmell, N.J. 2001. Determining the species status of one of the world's rarest frogs: a conservation dilemma. Anim. Conserv. 4: 2935.
  • Hooson, S. & Jamieson, I.G. 2003. The distribution and current status of New Zealand saddleback Philesturnus carunculatus. Bird Conserv. Int. 13: 7995.
  • Hooson, S. & Jamieson, I.G. 2004. Variation in breeding success among reintroduced island populations of South Island saddlebacks Philesturnus carunculatus carunculatus. Ibis 146: 416426.
  • Houlden, B.A., England, P.R., Taylor, A.C., Greville, W.D. & Sherwin, W.B. 1996. Low genetic variability of the koala Phascolarctos cinereus in south-eastern Australia following a severe population bottleneck. Mol. Ecol. 5: 269281.
    Direct Link:
  • Hudson, Q.J. 1999. Genetic variation within and among populations of kokako (Callaeas cinerea). MSc Thesis, University of Waikato, Hamilton.
  • Hudson, Q.J., Wilkins, R.J., Waas, J.R. & Hogg, I.D. 2000. Low genetic variability in small populations of New Zealand kokako Callaeas cinerea wilsoni. Biol. Conserv. 96: 105112.
  • Hughes, W.O.H. & Boomsma, J.J. 2004. Genetic diversity and disease resistance in leaf-cutting ant societies. Evolution 58: 12511260.
  • Jamieson, I.G., Wallis, G.P. & Briskie, J.V. 2006. Inbreeding and endangered species management: is New Zealand out of step with the rest of the world? Conserv. Biol. 20: 3847.
  • Lacy, R.C. 1997. Importance of genetic variation to the viability of mammalian populations. J. Mammal. 78: 320335.
  • Lambert, D.M., King, T., Shepherd, L.D., Livingston, A., Anderson, S. & Craig, J.L. 2005. Serial population bottlenecks and genetic variation: translocated populations of the New Zealand saddleback (Philesturnus carunculatus rufusater). Conserv. Genet. 6: 114.
  • Lande, R. 1998. Risk of population extinction from fixation of deleterious and reverse mutations. Genetica 102/103: 2127.
  • Larson, S., Jameson, R., Etnier, M., Fleming, M. & Bentzen, P. 2002. Loss of genetic diversity in sea otters (Enhydra lutris) associated with the fur trade of the 18th and 19th centuries. Mol. Ecol. 11: 18991903.
  • Lehman, N. 1998. Genes are not enough. Curr. Biol. 8: R722R724.
  • Leonard, J.A., Wayne, R.K. & Cooper, A. 2000. Population genetics of Ice Age brown bears. Proc. Natl Acad. Sci. U.S.A. 97: 16511654.
  • Lovegrove, T.G. 1996. A comparison of the effects of predation by Norway (Rattus norvegicus) and Polynesion rats (R. exulans) on saddleback (Philesturnus carunculatus). Notornis 43: 91112.
  • Luikart, G., Sherwin, W.B., Steele, B.M. & Allendorf, F.W. 1998. Usefulness of molecular markers for detecting population boottlenecks via monitoring genetic change. Mol. Ecol. 7: 963974.
  • Matocq, M.D. & Villablanca, F.X. 2001. Low genetic diversity in an endangered species: recent or historic pattern? Biol. Conserv. 98: 6168.
  • McGlone, M., Wardle, P. & Worthy, T. 2003. Environmental change since the last glaciation. In: The Natural History of Southern New Zealand (J. T. Darby, R. E. Fordyce, A. Mark, K. Probert & C. Townsend, eds), pp. 105128. University of Otago Press, Dunedin.
  • McKenzie, J.A. & Batterham, P. 1994. The genetic, molecular and phenotypic consequences of selection for insecticide resistance. Trends Ecol. Evol. 9: 166169.
  • Merton, D.V. 1975. The saddleback: its status and conservation. In: Breeding Endangered Species in Captivity (R. D. Martin, ed.), pp. 6174. Academic Press, London.
  • Miller, C.R. & Waits, L.P. 2003. The history of effective population size and genetic diversity in the Yellowstone grizzly (Ursus arctos): implications for conservation. Proc. Natl Acad. Sci. U.S.A. 100: 43344339.
  • Miller, H.C., Lambert, D.M., Millar, C.D., Robertson, B.C. & Minot, E.O. 2003. Minisatellite DNA profiling detects lineages and parentage in the endangered kakapo (Strigops habroptilus) despite low microsatellite DNA variation. Conserv. Genet. 4: 265274.
  • Mundy, N.I., Unitt, P. & Woodruff, D.S. 1997. Skin from feet of museum specimens as a non-destructive source of DNA for avian genotyping. Auk 114: 126129.
  • Nano Drop Technologies Inc. 2006. ND-1000 Spectrophotometer V3.3 User's Manual. Nano Drop Technologies Inc., Wilmington, DE.
  • Newman, D.G. 1980. Colonisation of Coppermine Island by North Island saddleback. Notornis 27: 146147.
  • Newman, D. & Pilson, D. 1997. Increased probability of extinction due to decreased genetic effective population size: experimental populations of Clarkia pulchella. Evolution 51: 354362.
  • Nielsen, E.E., Hansen, M.M. & Loeschchke, V. 1999. Genetic variation in time and space: microsatellite analysis of extinct and extant populations of Atlantic salmon. Evolution 53: 261268.
  • Nillson, R.J. 1978. The South Island saddleback. Wildl. Rev. 9: 3236.
  • O‘Brien, S.J. & Evermann, J.F. 1988. Interactive influences of infectious disease and genetic diversity in natural populations. Trends Ecol. Evol. 3: 254259.
  • Pääbo, S., Poinar, H., Serre, D., Jaenicke-Despres, V., Hebler, J., Rohland, N., Kuch, M., Krause, J., Vigilant, L. & Hofreiter, M. 2004. Genetic analyses from ancient DNA. Annu. Rev. Genet. 38: 645679.
  • Paxinos, E.E., James, H.F., Olson, S.L., Ballou, J.D., Leonard, J.A. & Fleischer, R.C. 2002. Prehistoric decline of genetic diversity in the nene. Science 296: 1827.
  • Pertoldi, C., Hansen, M.M., Loeschcke, V., Madsen, A.B., Jacobsen, L. & Baagoe, H. 2001. Genetic consequences of population decline in the European otter (Lutra lutra): an assessment of microsatellite DNA variation in Danish otters from 1883 to 1993. Proc. R. Soc. B. 268: 17751781.
  • Piry, S., Luikart, G. & Cornuet, J.-M. 1999. Bottleneck: a computer program for detecting recent reductions in the effective population size using allele frequency data. J. Hered. 90: 502503.
  • Primmer, C.R., Moller, A.P. & Ellegren, H. 1996. A wide-range survey of cross-species microsatellite amplification in birds. Mol. Ecol. 5: 365378.
    Direct Link:
  • Raymond, M. & Rousset, F. 1995. Genepop (version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86: 248249.
  • Rice, W.R. 1988. Analyzing tables of statistical tests. Evolution 43: 223225.
  • Richardson, D.S., Jury, F.L., Dawson, D.A., Salgueiro, P., Komdeur, J. & Burke, T. 2000. Fifty Seychelles warbler (Acrocephalus sechellensis) microsatellite loci polymorphic in Sylviidae species and their cross-amplification in other passerine birds. Mol. Ecol. 9: 22262231.
  • Roy, M.S., Girman, D.J., Taylor, A.C. & Wayne, R.K. 1994. The use of museum specimens to reconstruct the genetic variability and relationships of extinct populations. Experientia 50: 551557.
  • Saccheri, I., Kuussaari, M., Kankare, M., Vikman, P., Fortelius, W. & Hanski, I. 1998. Inbreeding and extinction in a butterfly metapopulation. Nature 392: 491494.
  • Sefc, K.M., Payne, R.B. & Sorenson, D. 2001. Characterization of microsatellite loci in village indigobirds Vidua chalybeata and cross-species amplification in estrildid and ploceid finches. Mol. Ecol. Notes 1: 252254.
  • Seutin, G., White, B.N. & Boag, P.T. 1991. Preservation of avian blood and tissue samples for DNA analyses. Can. J. Zool. 69: 8290.
  • Sjögren, P. & Wyöni, P.-I. 1994. Conservation genetics and detection of rare alleles in finite populations. Conserv. Biol. 8: 267270.
  • Slate, J., Kruuk, L.E.B., Marshall, T.C., Pemberton, J.M. & Clutton-Brock, T.H. 2000. Inbreeding depression influences lifetime breeding success in a wild population of red deer (Cervus elaphus). Proc. R. Soc. B. 267: 16571662.
  • Snowbank, S.A. & Krajewski, C. 1995. Lack of restriction-site variation in mitochondrial-DNA control region of whooping cranes (Grus americana). Auk 112: 10451049.
  • Taberlet, P., Griffin, S., Goossens, B., Questiau, S., Manceau, V., Escaravage, N., Waits, L.P. & Bouvet, J. 1996. Reliable genotyping of samples with very low DNA quantities using PCR. Nucl. Acids Res. 24: 31893194.
  • Tarr, C.L. & Fleischer, R. 1998. Primers for polymorphic GT microsatellites isolated from the Mariana crow, Corvus kubaryi. Mol. Ecol. 7: 247255.
  • Towns, D.R. & Daugherty, C.H. 1994. Patterns of range contractions and extinctions in the New Zealand herpetofauna following human colonisation. N. Z. J. Zool. 21: 325339.
  • Van Oosterhout, C., Hutchison, W.F., Wills, D.P.M. & Shipley, P. 2004. Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535538.
  • Visscher, P.M., Smith, D., Hall, S.J.G. & Williams, J.L. 2001. A viable herd of genetically uniform cattle. Nature 409: 303.
  • Walsh, P.S., Metzger, D.A. & Higuchi, R. 1991. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10: 506513.
  • Whitehouse, A.M. & Harley, E.H. 2001. Post-bottleneck genetic diversity of elephant populations in South Africa, revealed using microsatellite analysis. Mol. Ecol. 10: 21392149.
  • Whitlock, M.C. 2000. Fixation of new alleles and the extinction of small populations: drift load, beneficial alleles, and sexual selection. Evolution 54: 18551861.
  • Whitlock, M.C. & Otto, S.P. 1999. The panda and the phage: compensatory mutations and the persistence of small populations. Trends Ecol. Evol. 14: 295296.
  • Williams, C.L., Serfass, T.L., Cogan, R. & Rhodes, O.E. Jr 2002. Microsatellite variation in the reintroduced Pennsylvania elk herd. Mol. Ecol. 11: 12991310.
  • Wisely, S.M., Buskirk, S.W., Fleming, M.A., McDonald, D.B. & Ostrander, E.A. 2002. Genetic diversity and fitness in black-footed ferrets before and during a bottleneck. J. Hered. 93: 231237.