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  • Aguilera, X., Mergeay, J., Wollebrants, A., Declerck, S. & De Meester, L. 2007. Asexuality and polyploidy in Daphnia from the tropical Andes. Limnol. Oceanogr. 52: 20792088.
  • Altermatt, F. & Ebert, D. 2008. Genetic diversity of Daphnia magna populations enhances resistance to parasites. Ecol. Lett. 11: 918928.
  • APHA. 1980. Standard Methods for the Examination of Water and Wastewater, 15th edn. Washington, DC.
  • Bachmann, R.W. & Canfield, D.E. 1996. Use of an alternative method for monitoring total nitrogen concentrations in Florida lakes. Hydrobiologia 323: 18.
  • Baker, H.G. 1965. Characteristics and modes of origin of weeds. In: Genetics of Colonizing Species (H.G.Baker & G.L.Stebbins, eds), pp. 137172. Academic Press, New York, NY.
  • Balloux, F., Lehmann, L. & De Meeûs, T. 2003. The population genetics of clonal and partially clonal diploids. Genetics 164: 16351644.
  • Borcard, D. & Legendre, P. 2002. All-scale spatial analysis of ecological data by means of principal coordinates of neighbour matrices. Ecol. Modell. 153: 5168.
  • Borcard, D., Legendre, P. & Drapeau, P. 1992. Partialling out the spatial component of ecological variation. Ecology 73: 10451055.
  • ter Braak, C.J.F. 1986. Canonical correspondence analysis: a new eigenvector technique for multivariate direct gradient analysis. Ecology 67: 11671179.
  • Chase, J.M. & Leibold, M.A. 2003. Ecological Niches: Linking Classical and Contemporary Approaches. The University of Chicago Press, Chicago, Illinois.
  • Colbourne, J.K., Robison, B., Bogart, K. & Lynch, M. 2004. Five hundred and twenty-eight microsatellite markers for ecological genomic investigations using Daphnia. Mol. Ecol. Notes 4: 485490.
  • Conner, J.K. & Hartl, D.L. 2004. A Primer of Ecological Genetics. Sinauer Associates, Sunderland, Massachusetts.
  • Cousyn, C., De Meester, L., Colbourne, J.K., Brendonck, L., Verschuren, D. & Volckaert, F. 2001. Rapid, local adaptation of zooplankton behavior to changes in predation pressure in the absence of neutral genetic changes. Proc. Natl. Acad. Sci. USA 98: 62566260.
  • Crease, T.J., Stanton, D.J. & Hebert, P.D.N. 1989. Polyphyletic origins of asexuality in Daphnia-pulex. II. Mitochondrial-DNA variation. Evolution 43: 10161026.
  • Crease, T.J., Lynch, M. & Spitze, K. 1990. Hierarchial analysis of population genetic variation in mitochondrial and nuclear genes of Daphnia pulex. Mol. Biol. Evol. 7: 444458.
  • Cristescu, M.E.A., Colbourne, J.K., Radivojac, J. & Lynch, M. 2006. A microsatellite-based genetic linkage map of the waterflea, Daphnia pulex: on the prospect of crustacean genomics. Genomics 88: 415430.
  • Crow, J.F. 1992. An advantage of sexual reproduction in a rapidly changing environment. J. Hered. 83: 169173.
  • Crumpton, W.G., Isenhart, T.M. & Mitchell, P.D. 1992. Nitrate and organic N analyses with 2nd-derivative spectroscopy. Limnol. Oceanogr. 37: 907913.
  • Crutsinger, G.M., Souza, L. & Sanders, N.J. 2008. Intraspecific diversity and dominant genotypes resist plant invasions. Ecol. Lett. 11: 1623.
  • De Meester, L. 1996. Evolutionary potential and local genetic differentiation in a phenotypically plastic trait of a cyclical parthenogen, Daphnia magna. Evolution 50: 12931298.
  • De Meester, L., Gomez, A., Okamura, B. & Schwenk, K. 2002. The Monopolization Hypothesis and the dispersal-gene flow paradox in aquatic organisms. Acta Oecol. 23: 121135.
  • De Meester, L., Louette, G., Duvivier, C., Van Damme, C. & Michels, E. 2007. Genetic composition of resident populations influences establishment success of immigrant species. Oecologia 153: 431440.
  • De Meeûs, T. & Balloux, F. 2005. F-statistics of clonal diploids structured in numerous demes. Mol. Ecol. 14: 26952702.
  • Declerck, S., Cousyn, C. & De Meester, L. 2001. Evidence for local adaptation in neighbouring Daphnia populations: a laboratory transplant experiment. Freshw. Biol. 46: 187198.
  • Derry, A.M., Arnott, S.E., Shead, J.A., Hebert, P.D.N. & Boag, P.T. 2009. Ecological linkages between community and genetic diversity in zooplankton among boreal shield lakes. Ecology 90: 22752286.
  • Doyle, J.J. & Doyle, J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 1115.
  • Dray, S., Legendre, P. & Peres-Neto, P.R. 2006. Spatial modelling: a comprehensive framework for principal coordinate analysis of neighbour matrices (PCNM). Ecol. Modell. 196: 483493.
  • Evanno, G., Castella, E., Antoine, C., Paillat, G. & Goudet, J. 2009. Parallel changes in genetic diversity and species diversity following a natural disturbance. Mol. Ecol. 18: 11371144.
  • Excoffier, L. 2007. Analysis of population subdivision. In: Handbook of Statistical Genetics (D.J.Balding, M.Bishop & C.Cannings, eds), pp. 9801020. John Wiley & Sons, West Sussex, England.
  • Fady, B. & Conord, C. 2010. Macroecological patterns of species and genetic diversity in vascular plants of the Mediterranean basin. Divers. Distrib. 16: 5364.
  • Fox, J.A., Dybdahl, M.F., Jokela, J. & Lively, C.M. 1996. Genetic structure of coexisting sexual and clonal subpopulations in a freshwater snail (Potamopyrgus antipodarum). Evolution 50: 15411548.
  • Frazer, G.W., Canham, C.D. & Lertzman, K.P. 1999. Gap Light Analyzer (GLA), Version 2.0: Imaging software to extract canopy structure and gap light transmission indices from true-colour fisheye photographs, users manual and program documentation. Simon Fraser University, Burnaby, British Columbia, and the Institute of Ecosystem Studies, Millbrook, New York.
  • Frazer, G.W., Canham, C.D. & Lertzman, K.P. 2000. Gap light analyzer, version 2.0. Bull. Ecol. Soc. Am. 81: 191197.
  • Gorokhova, E., Dowling, T.E., Weider, L.J., Crease, T.J. & Elser, J.J. 2002. Functional and ecological significance of rDNA intergenic spacer variation in a clonal organism under divergent selection for production rate. Proc. R. Soc. Lond. B Biol. Sci. 269: 23732379.
  • Gotelli, N.J. & Ellison, A.M. 2004. A Primer of Ecological Statistics. Sinauer Associates, Sunderland, Massachusetts.
  • Goudet, J. 1995. FSTAT (Version 1.2): a computer program to calculate F-statistics. J. Hered. 86: 485486.
  • Griffith, D.A. & Peres-Neto, P.R. 2006. Spatial modeling in ecology: the flexibility of eigenfunction spatial analyses. Ecology 87: 26032613.
  • Halkett, F., Simon, J.C. & Balloux, F. 2005. Tackling the population genetics of clonal and partially clonal organisms. Trends Ecol. Evol. 20: 194201.
  • He, T.H. & Lamont, B.B. 2010. Species versus genotypic diversity of a nitrogen-fixing plant functional group in a metacommunity. Popul. Ecol. 52: 337345.
  • Hebert, P.D.N. & Beaton, M.J. 1993. Methodologies for Allozyme Analysis Using Cellulose Acetate Electrophoresis. Helena Laboratories, Windsor, Ontario.
  • Hebert, P.D.N. & Finston, T.L. 2001. Macrogeographic patterns of breeding system diversity in the Daphnia pulex group from the United States and Mexico. Heredity 87: 153161.
  • Hebert, P.D.N., Beaton, M.J., Schwartz, S.S. & Stanton, D.J. 1989. Polyphyletic origins of asexuality in Daphnia pulex. I. Breeding system variation and levels of clonal diversity. Evolution 43: 10041015.
  • Hebert, P.D.N., Schwartz, S.S., Ward, R.D. & Finston, T.L. 1993. Macrogeographic patterns of breeding system diversity in the Daphnia pulex group. I. Breeding systems of Canadian populations. Heredity 70: 148161.
  • Heier, C.R. & Dudycha, J.L. 2009. Ecological speciation in a cyclic parthenogen: sexual capability of experimental hybrids between Daphnia pulex and Daphnia pulicaria. Limnol. Oceanogr. 54: 492502.
  • Heywood, J.S. 1991. Spatial analysis of genetic variation in plant populations. Annu. Rev. Ecol. Syst. 22: 335355.
  • Holyoak, M., Leibold, M.A. & Holt, R.D. (eds) 2005. Metacommunities: Spatial Dynamics and Ecological Communities. University of Chicago Press, Chicago, Illinois.
  • Hörandl, E. 2009. A combinational theory for maintenance of sex. Heredity 103: 445457.
  • Hurst, L.D. & Peck, J.R. 1996. Recent advances in understanding of the evolution and maintenance of sex. Trends Ecol. Evol. 11: A46A52.
  • Innes, D.J. & Hebert, P.D.N. 1988. The origin and genetic basis of obligate parthenogenesis in Daphnia pulex. Evolution 42: 10241035.
  • Innes, D.J., Schwartz, S.S. & Hebert, P.D.N. 1986. Genotypic diversity and variation in mode of reproduction among populations in the Daphnia pulex group. Heredity 57: 345355.
  • Johnson, M.T.J. & Agrawal, A.A. 2005. Plant genotype and environment interact to shape a diverse arthropod community on evening primrose (Oenothera biennis). Ecology 86: 874885.
  • Kondrashov, A.S. 1993. Classification of hypotheses on the advantage of amphimixis. J. Hered. 84: 372387.
  • Legendre, P. & Gallagher, E.D. 2001. Ecologically meaningful transformations for ordination of species data. Oecologia 129: 271280.
  • Legendre, P., Borcard, D. & Peres-Neto, P.R. 2005. Analyzing beta diversity: partitioning the spatial variation of community composition data. Ecol. Monogr. 75: 435450.
  • Leibold, M.A., Holyoak, M., Mouquet, N., Amarasekare, P., Chase, J.M., Hoopes, M.F. et al. 2004. The metacommunity concept: a framework for multi-scale community ecology. Ecol. Lett. 7: 601613.
  • Lynch, M. 1984. Destabilizing hybridization, general-purpose genotypes and geographic parthenogenesis. Q. Rev. Biol. 59: 257290.
  • Lynch, M., Pfrender, M., Spitze, K., Lehman, N., Hicks, J., Allen, D. et al. 1999. The quantitative and molecular genetic architecture of a subdivided species. Evolution 53: 100110.
  • Merritt, R.W. & Cummins, K.W. 1996. An Introduction to the Aquatic Insects of North America. Kendall/Hunt Publishing Company, United States of America.
  • Morgan, K.K., Hicks, J., Spitze, K., Latta, L., Pfrender, M.E., Weaver, C.S. et al. 2001. Patterns of genetic architecture for life-history traits and molecular markers in a subdivided species. Evolution 55: 17531761.
  • Negovetic, S., Anholt, B.R., Semlitsch, R.D. & Reyer, H.U. 2001. Specific responses of sexual and hybridogenetic European waterfrog tadpoles to temperature. Ecology 82: 766774.
  • Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70: 33213323.
  • Oksanen, J., Kindt, R., Legendre, P., O-Hara, B., Simpson, G.L. & Solymos, P. et al. 2008. Vegan: Community Ecology Package. R package version 1.15-1. See http://vegan.r-forge.r-project.org.
  • Otto, S.P. & Lenormand, T. 2002. Resolving the paradox of sex and recombination. Nat. Rev. Genet. 3: 252261.
  • Paland, S., Colbourne, J.K. & Lynch, M. 2005. Evolutionary history of contagious asexuality in Daphnia pulex. Evolution 59: 800813.
  • Peres-Neto, P.R., Legendre, P., Dray, S. & Borcard, D. 2006. Variation partitioning of species data matrices: estimation and comparison of fractions. Ecology 87: 26142625.
  • Prepas, E.E. & Rigler, F.H. 1982. Improvements in quantifying the phosphorus concentration in lake water. Can. J. Fish. Aquat. Sci. 39: 822829.
  • Raymond, M. & Rousset, F. 1995. Genepop (version 0.2): population genetics software for exact tests and ecumenicism. J. Hered. 86: 248249.
  • Rousset, F. 2008. GENEPOP ‘007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol. Ecol. Notes 8: 103106.
  • Sarnelle, O. & Wilson, A.E. 2005. Local adaptation of Daphnia pulicaria to toxic cyanobacteria. Limnol. Oceanogr. 50: 15651570.
  • Semlitsch, R.D., Hotz, H. & Guex, G.D. 1997. Competition among tadpoles of coexisting hemiclones of hybridogenetic Rana esculenta: support for the frozen niche variation model. Evolution 51: 12491261.
  • Simon, J.C., Delmotte, F., Rispe, C. & Crease, T. 2003. Phylogenetic relationships between parthenogens and their sexual relatives: the possible routes to parthenogenesis in animals. Biol. J. Linn. Soc. 79: 151163.
  • Simpson, E.H. 1949. Measurement of diversity. Nature 163: 688.
  • Spitze, K. 1993. Population structure in Daphnia obtusa: quantitative genetic and allozymic variation. Genetics 135: 367374.
  • Storey, J.D. 2003. The positive false discovery rate: a Bayesian interpretation and the q-value. Ann. Stat. 31: 20132035.
  • Storey, J.D. & Tibshirani, R. 2003. Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA 100: 94409445.
  • Tessier, A.J., Young, A. & Leibold, M. 1992. Population dynamics and body-size selection in Daphnia. Limnol. Oceanogr. 37: 113.
  • Vellend, M. 2005. Species diversity and genetic diversity: parallel processes and correlated patterns. Am. Nat. 166: 199215.
  • Vellend, M. 2006. The consequences of genetic diversity in competitive communities. Ecology 87: 304311.
  • Vellend, M. & Geber, M.A. 2005. Connections between species diversity and genetic diversity. Ecol. Lett. 8: 767781.
  • Vrijenhoek, R.C. 1979. Factors affecting clonal diversity and coexistence. Am. Zool. 19: 787797.
  • Vrijenhoek, R.C. 1984. Ecological differentiation among clones: the frozen niche variation model. In: Population Biology and Evolution (K.Wohrmann & V.Loeschcke, eds), pp. 217231. Springer-Verlag, Berlin, Germany.
  • Weider, L.J. & Hebert, P.D.N. 1987. Ecological and physiological differentiation among low arctic clones of Daphnia pulex. Ecology 68: 188198.
  • Weider, L.J. & Hobæk, A. 1997. Postglacial dispersal, glacial refugia, and clonal structure in Russian/Siberian populations of the arctic Daphnia pulex complex. Heredity 78: 363372.
  • Weider, L.J. & Hobæk, A. 2003. Glacial refugia, haplotype distributions, and clonal richness of the Daphnia pulex complex in arctic Canada. Mol. Ecol. 12: 463473.
  • Weider, L.J., Hobæk, A., Hebert, P.D.N. & Crease, T.J. 1999. Holarctic phylogeography of an asexual species complex – II. Allozymic variation and clonal structure in arctic Daphnia. Mol. Ecol. 8: 113.
  • Whittaker, R.H. 1960. Vegetation of the Siskiyou mountains, Oregon and California. Ecol. Monogr. 30: 279338.
  • Williamson, C.E., Morris, D.P., Pace, M.L. & Olson, A.G. 1999. Dissolved organic carbon and nutrients as regulators of lake ecosystems: resurrection of a more integrated paradigm. Limnol. Oceanogr. 44: 795803.
  • Wilson, C.C. & Hebert, P.D.N. 1992. The maintenance of taxon diversity in an asexual assemblage: an experimental analysis. Ecology 73: 14621472.
  • Wilson, C.C. & Hebert, P.D.N. 1993. Impact of copepod predation on distribution of Daphnia pulex clones. Limnol. Oceanogr. 38: 13041310.
  • Wright, S. 1943. Isolation by distance. Genetics 28: 114138.