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References

  • Alfaro, M.E., Santini, F., Brock, C., Alamillo, H., Dornburg, A., Rabosky, D.L. et al. 2009. Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates. Proc.Nat. Acad. Sci. 106: 1341013414.
  • Allen, G.R. 1991. Field Guide to the Freshwater Fishes of New Guinea. Christensen Research Institute, Madang, Papua New Guinea.
  • Allen, G.R., Midgley, S.H. & Allen, M. 2002. Field Guide to the Freshwater Fishes of Australia. Western Australian Museum, Perth, Western Australia.
  • Barlow, G.W. 2000. The Cichlid Fishes. Perseus Publishing, Cambridge, MA.
  • Bell, M.A. & Andrews, C.A. 1997. Evolutionary consequences of colonization of fresh water by primitively anadromous fishes. In: Evolutionary Ecology of Freshwater Animals, Current Trends and Case Studies (B. Streit, T. Städler & C.M. Lively, eds), pp. 323363. Birkhäuser, Basel.
  • Bellwood, D.R. 2003. Origins and escalation of herbivory in fishes: a functional perspective. Paleobiology 29: 7183.
  • Betancur-R, R. 2010. Molecular phylogenetics support multiple evolutionary transitions from marine to freshwater habitats in ariid catfishes. Mol. Phyl. Evol. 55: 249258.
  • Bloom, D.D. & Lovejoy, N.R. 2012. Molecular phylogenetics reveals a pattern of biome conservatism in New World anchovies (family Engraulidae). J. Evol. Biol. 24: 701715.
  • Choat, J.H. & Clements, K.D. 1998. Vertebrate herbivores in marine and terrestrial environments: a nutritional ecology perspective. Ann. Rev. Ecol. Syst. 29: 375403.
  • Coates, D. 1993. Fish ecology and management of the Sepik-Ramu, New Guinea, a large contemporary tropical river basin. Environ. Biol. Fishes 38: 345368.
  • Cook, B.D., Baker, A.M., Page, T.J., Grant, S.C., Fawcett, J.H., Hurwood, D.A. et al. 2006. Biogeographic history of an Australian freshwater shrimp, Paratya australiensis (Atyidae): the role life history transition in phylogeographic diversification. Mol. Ecol. 15: 10831093.
  • Correa, S.B., Winemiller, K.O., Lopez-Fernandez, H. & Galetti, M. 2007. Evolutionary perspectives on seed consumption and dispersal by fishes. Bioscience 57: 748756.
  • Davis, A.M., Pusey, B.J., Thorburn, D.C., Dowe, J.L., Morgan, D.L. & Burrows, D. 2010. Riparian contributions to the diet of terapontid grunters in wet-dry tropical rivers. J. Fish Biol. 76: 862879.
  • Davis, A.M., Pearson, R.G., Pusey, B.J., Perna, C., Morgan, D.L. & Burrows, D. 2011a. Trophic ecology of northern Australia’s terapontids: ontogenetic dietary shifts and feeding classification. J. Fish Biol. 78: 265286.
  • Davis, A.M., Pusey, B.J. & Pearson, R.G. 2011b. Contrasting intraspecific dietary shifts in two terapontid assemblages from Australia’s wet-dry tropics. Ecol. Freshw. Fish 21: 4256.
  • Drummond, A.J. & Rambaut, A. 2007. BEAST: bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7: 214.
  • Ekman, S., Andersen, H.L. & Wedin, M. 2008. The limitations of ancestral state reconstruction and the evolution of the ascus in the Lecanorales (lichenized Ascomycota). Syst. Biol. 57: 141156.
  • Froese, R. & Pauly, D. 2011. FishBase. World Wide Web electronic publication. http://www.fishbase.org, version (08/2011).
  • Fryer, G. & Iles, T.D. 1972. The Cichlid Fishes of the Great Lakes of Africa: Their Biology and Evolution. Oliver & Boyd, Edinburgh, UK.
  • Goloboff, P.A., Farris, J.S. & Nixon, K.C. 2008. TNT, a free program for phylogenetic analysis. Cladistics 24: 774786.
  • Hall, T.A. 1999. BIOEDIT: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41: 9598.
  • Harvey, P.H. & Pagel, M.D. 1991. The Comparative Method in Evolutionary Biology. Oxford University Press, Oxford, UK.
  • Henstridge, D.A. & Missen, D.D. 1982. Geology of oil-shale deposits with The Narrows graben, Queensland, Australia. Am. Assoc. Pet. Geol. Bull. 66: 719731.
  • Hillis, D.M. & Bull, J.J. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42: 182192.
  • Horn, M.H. 1989. Biology of marine herbivorous fishes. Ocean. Mar. Biol. Ann. Rev. 27: 167272.
  • Horn, M.H. 1998. Feeding and digestion. In: The Physiology of Fishes (D.H. Evans, ed), pp. 4363. CRC Press, Boca Raton, FL.
  • Horn, M.H. & Ojeda, F.P. 1999. Herbivory. In: Intertidal Fishes: Life in Two Worlds (M.H. Horn, K.L. Martin & M.A. Chotkowski, eds), pp. 197222. Academic Press, San Diego, CA.
  • Hyslop, E.J. 1980. Stomach content analysis – a review of methods and their application. J. Fish Biol. 17: 411429.
  • Johnson, J.W. 1999. Annotated checklist of the fishes of Moreton Bay, Queensland, Australia. Mem. Qld Mus. 43: 709762.
  • Johnson, J.W. 2010. Fishes of the Moreton Bay Marine Park and adjacent continental shelf waters, Queensland, Australia. Mem. Qld Mus. 54: 299353.
  • Katoh, K. & Toh, H. 2010. Parallelization of the MAFFT multiple sequence alignment program. Bioinformatics 26: 18991900.
  • Kennard, M., Pusey, B. & Arthington, A. 2001. Trophic Ecology of Freshwater Fishes in Australia. Summary Report CRC for Freshwater Ecology Scoping Study SCD6. CRC for Freshwater Ecology, Griffith University, Brisbane, Australia.
  • Knoppel, H.A. 1970. Food of central Amazonian fishes. Amazonia 2: 257352.
  • Lee, C.E. & Bell, M.A. 1999. Causes and consequences of recent freshwater invasions by saltwater animals. Tree 14: 284288.
  • Lee, S.C. & Tsai, M.P. 1999. Molecular systematics of the thornfishes genera Terapon and Pelates (Perciformes: Teraponidae) with reference to the new genus Pseudoterapon. Zool. Stud. 38: 279286.
  • Lewis, P.O. 2001. A likelihood approach to estimating phylogeny from discrete morphological character data. Syst. Biol. 50: 913925.
  • Lovejoy, N.R. & Collette, B.B. 2001. Phylogenetic relationships of New World needlefishes (Teleostei: Belonidae) and the biogeography of transitions between marine and freshwater habitats. Copeia 2001: 324338.
  • Lovejoy, N.R., Albert, J.S. & Crampton, W.G.R. 2006. Miocene marine incursions and marine/freshwater transitions: evidence from Neotropical fishes. Sou. Amer. Ear. Sci. 21: 513.
  • Lovejoy, N.R., Bermingham, E. & Martin, A.P. 1998. Marine incursion into South America. Nature 396: 421422.
  • Lowe-McConnell, R.H. 1975. Fish Communities in Tropical Freshwaters. Longmans, London, UK.
  • Lundberg, J.G., Kottelat, M., Smith, G.R., Stiassny, M.L.J. & Gill, A.C. 2000. So many fishes, so little time: an overview of recent ichthyological discovery in continental waters. Ann. Missour. Botan. Gard. 87: 2662.
  • Maddison, W.P. & Maddison, D.R. 2006. Mesquite: a modular system for evolutionary analysis. Available at: http://mesquiteproject.org.
  • McCune, B. & Grace, J.B. 2002. Analysis of Ecological Communities. MjM Software Design, Glenden Beach, OR.
  • Mees, G.F. & Kailola, P.J. 1977. The freshwater Therapontidae of New Guinea. Zool. Verhand 153: 388.
  • Merrick, J.R. & Schmida, G.E. 1984. Australian Freshwater Fishes: Biology and Management. Griffin Press Netley, Australia.
  • Mooers, A.Ø. & Schluter, D. 1999. Reconstructing ancestral states with maximum likelihood: support for one- and two-rate models. Syst. Biol. 48: 623633.
  • Near, T.J., Sandel, M., Kuhn, K.L., Unmack, P.J., Wainwright, P.C. & Smith, W.M. 2012. Nuclear gene inferred phylogenies resolve the relationships of the enigmatic pygmy sunfishes, Elassoma (Teleostei: Percomorpha). Mol. Phylogenet. Evol. 63: 388395.
  • Nelson, J.S. 2006. Fishes of the World. John Wiley & Sons, Hoboken, NJ.
  • Pagel, M. 1999. The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies. Syst. Biol. 48: 612622.
  • Pianka, E.R. 2000. Evolutionary Ecology, 6th edn. Addison Wesley Longman, New York, NY.
  • Posada, D. & Crandall, K.A. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817818.
  • Pusey, B.J., Kennard, M.J. & Arthington, A.H. 2004. Freshwater Fishes of North-eastern Australia. CSIRO Publishing, Collingwood, Australia.
  • Rabosky, D.L. 2010. Extinction rates should not be estimated from molecular phylogenies. Evolution 64: 18161824.
  • Rabosky, D.L., Donnellan, S.C., Talaba, A.L. & Lovette, I.J. 2007. Exceptional among-lineage variation in diversification rates during the radiation of Australia’s most diverse vertebrate clade. Proc. R. Soc. B 274: 29152923.
  • Raeymaekers, J.A.M., Maes, G.E., Audenaert, E. & Volckaert, F.A.M. 2005. Detecting Holocene divergence in the anadromous-freshwater three-spined stickleback (Gasterosteus aculeatus) system. Mol. Ecol. 14: 10011014.
  • Robinson, B.W. & Schluter, D. 2000. Natural selection and the evolution of adaptive genetic variation in northern freshwater fishes. In: Adaptive Genetic Variation in the Wild (T.A. Mousseau, B. Sinervo & J.A. Endler, eds), pp. 6594. Oxford University Press, Oxford, UK.
  • Sazima, I. 1983. Scale-eating in characoids and other fishes. Environ. Biol. Fish. 9: 87101.
  • Schaefer, S.A. & Lauder, G.V. 1986. Historical transformation of functional design: evolutionary morphology of feeding mechanisms in Loricarioid catfishes. Syst. Zool. 35: 498508.
  • Schluter, D. 2000. The Ecology of Adaptive Radiation. Oxford University Press, New York, NY.
  • Schluter, D., Price, T., Mooers, A.Ø. & Ludwig, D. 1997. Likelihood of ancestor states in adaptive radiation. Evolution 51: 16991711.
  • Shigeta, T., Usuki, H. & Gushima, K. 2001. Interaction between cleaner and host: the black porgy cleaning behaviour of juvenile sharpnose tigerfish, Rhyncopelates oxyrhyncus in the Seto Inland Sea, Western Japan. In: Proceedings of the 30th U.S. – Japan Meeting on Aquaculture (Y. Nakamura, J.P. McVey, K. Leber, C. Neidig, S. Fox & K. Churchill, eds) pp. 34 Mote Marine Laboratory, December, 3–4, Sarasota, FL.
  • Sokal, R.R. & Rohlf, F.J. 1995. Biometry: The Principles and Practice of Statistics in Biological Research, 3rd edn. W.H. Freeman & Co., New York, NY.
  • Sparks, J.S. & Smith, W.L. 2004. Phylogeny and biogeography of the Malagasy and Australasian rainbowfishes (Teleostei: Melanotaenioidei): Gondwanan vicariance and evolution in freshwater. Mol. Phyl. Evol. 33: 719734.
  • Stephens, P.R. & Wiens, J.J. 2003. Ecological diversification and phylogeny of emydid turtles. Biol. J. Linn. Soc. 79: 577610.
  • Streelman, J.T. & Danley, P.D. 2003. The stages of vertebrate evolutionary radiation. Tree 18: 126131.
  • Streelman, J.T., Alfaro, M., Westneat, M.W., Bellwood, D.R. & Karl, S.A. 2002. Evolutionary history of the parrotfishes: biogeography, ecomorphology, and comparative diversity. Evolution 56: 961971.
  • Sun, B.L. 1991. A new species of Teraponidae from China. Acta Zool. Sin. 37: 254257.
  • Swofford, D.L. 2003. PAUP*. Phylogenetic Analysis Using Parsimony (* and other methods), Version 4.0b10. Sinauer, Sunderland, MA.
  • Tamura, K., Dudley, J., Nei, M. & Kumar, S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 15961599.
  • Turner, S. 1982. A catalogue of fossil fish in Queensland. Mem. Queensl. Mus. 20: 599611.
  • Unmack, P.J. 2001. Biogeography of Australian freshwater fishes. J. Biogeogr. 28: 10531089.
  • Unmack, P.J. & Dowling, T.E. 2010. Biogeography of the genus Craterocephalus (Teleostei: Atherinidae) in Australia. Mol. Phyl. Evol. 55: 968984.
  • Vari, R.P. 1978. The terapon perches (Percoidei: Teraponidae): a cladistic analysis and taxonomic revision. Bull. Amer. Mus. Nat. Hist. 159: 175340.
  • Vari, R.P. & Hutchins, J.B. 1978. New species of terapon perches (Percoidei, Teraponidae) from Australia. Am. Mus. Novit No. 2654: 18.
  • Vermeij, G.J. & Lindberg, D.R. 2000. Delayed herbivory and the assembly of marine benthic ecosystems. Paleobiology 26: 419430.
  • Waters, J.M. & Wallis, G.P. 2001. Cladogenesis and loss of the marine life-history phase in freshwater galaxiid fishes (Osmeriformes: Galaxiidae). Evolution 55: 587597.
  • Westneat, M.W. & Alfaro, M.E. 2005. Phylogenetic relationships and evolutionary history of the reef fish family Labridae. Mol. Phyl. Evol. 36: 370390.
  • Whitehead, A. 2010. The evolutionary radiation of diverse osmotolerant physiologies in killifish (Fundulus Sp.). Evolution 64: 20702085.
  • Whitfield, A.K. & Blaber, S.J.M. 1978. Scale-eating habits of the marine teleost Terapon jarbua (Forskal). J. Fish Biol. 12: 6170.
  • Williams, W.D. & Allen, G.R. 1987. Origins and adaptations of the fauna of inland waters. In: Fauna of Australia, Volume 1A, General Articles (G.R. Hyne & D.W. Walton, eds), pp. 184201. Government Printing Service, Canberra, Australia.
  • Wilson, A.B., Teugels, G.G. & Meyer, A. 2008. Marine incursion: the freshwater herring of Lake Tanganyika are the product of a marine invasion into West Africa. PLoS One 3: e1979.
  • Winemiller, K.O., Kelso-Winemiller, L.C. & Brenkert, A.L. 1995. Ecomorphological diversification and convergence in fluvial cichlid fishes. Environ. Biol. Fishes 44: 235261.
  • Winterbottom, R. & McLennan, D.A. 1993. Cladogram versatility: evolution and biogeography of acanthuroid Fishes. Evolution 47: 15571571.
  • Yagishita, N., Miya, M., Yamanoue, Y., Shirai, S.M., Nakayama, K., Suzuki, N. et al. 2009. Mitogenomic evaluation of the unique facial nerve pattern as a phylogenetic marker within the perciform fishes (Teleostei: Percomorpha). Mol. Phyl. Evol. 53: 258266.
  • Yamanoue, Y., Miya, M., Doi, H., Mabuchi, K., Sakai, H. & Nishida, M. 2011. Multiple invasions into freshwater by pufferfishes (Teleostei: Tetraodontidae): a mitogenomic perspective. PLoS One 6: e17410. Doi: 10.1371/journal.pone.0017410.
  • Yokoyama, R. & Goto, A. 2005. Evolutionary history of freshwater sculpins, genus Cottus (Teleostei: Cottidae) and related taxa, as inferred from mitochondrial DNA phylogeny. Mol. Phylogenet. Evol. 36: 654668.
  • Zwickl, D. 2006. Genetic Algorithm Approaches for the Phylogenetic Analysis of Large Biological Sequence Datasets Under the Maximum Likelihood Criterion. Ph.D. dissertation, The University of Texas at Austin.