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Figure S1. Expression profiles of photosynthesis-related genes that are up-regulated during TDZ-mediated shoot primordia differentiation from mature seed-derived embryogenic calli of indica rice. The profiles in germinating seedlings (GS), seedling roots (R), mature leaves (ML), young leaves (YL; leaf subtending the shoot apical meristem), shoot apical meristems (SAM), and various stages of panicle (P1–P6) and seed (S1–S5) development, including differentiating &#U2044; non-differentiating calli with &#U2044; without TDZ are presented by cluster display. The color scale (representing log signal values) is shown at the bottom.

Table S1. List of primers used for RT-PCR analysis.

Table S2. List of genes up-regulated during TDZ-mediated shoot primordia differentiation.

Table S3. List of genes down-regulated during TDZ-mediated shoot primordia differentiation.

Table S4. List of genes related to photosynthesis that are up-regulated during TDZ-mediated shoot primordial differentiation.

Table S5. Functional classification of genes up-regulated during TDZ-mediated shoot meristem differentiation.

Table S6. Functional classification of genes down-regulated during TDZ-mediated shoot meristem differentiation.

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