SEARCH

SEARCH BY CITATION

References

  • Albert, J. S., 2001: Species diversity and pylogenetic systematics of American knifefishes (gymnotiformes, teleostei). Miscellaneous Pulbications, Museum of Zoology, Universiyt of Michigan no. 190, 140 pages.
  • Albertson, R. C.; Payne-Ferreira, T. L.; Postlethwait, J.; Yelick, P. C., 2005: Zebrafish acvr2a and acvr2b exhibit distinct roles in craniofacial development. Dev. Dyn. 233, 14051418.
  • Arratia, G.; Schultze, H. P., 1990: The urohyal development and homology within osteichthyans. J. Morphol. 203, 247282.
  • Balhoff, J. P.; Dahdul, W. M.; Kothari, C. R.; Lapp, H.; Lundberg, J. G.; Mabee, P.; Midford, P. E.; Westerfield, M.; Vision, T. J., 2010: Phenex: ontological annotation of phenotypic diversity. PLoS ONE 5, e10500.
  • Blake, J. A.; Harris, M. A., 2008: The Gene Ontology (GO) project: structured vocabularies for molecular biology and their application to genome and expression analysis. Curr. Protoc. Bioinform. 23, 7.2.17.2.9.
  • Burger, A.; Davidson, D.; Baldock, R., (Ed.). 2008: Anatomy ontologies for bioinformatics: Principles and practice, Springer.
  • Carroll, S. B.; Grenier, J. K.; Weatherbee, S. D., 2005: From DNA to diversity: molecular genetics and the evolution of animal design. Blackwell Publishing, Malden, MA, USA.
  • Chitramuthu, B. P.; Baranowski, D. C.; Cadieux, B.; Rousselet, E.; Seidah, N. G.; Bennett, H. P., 2010: Molecular cloning and embryonic expression of zebrafish PCSK5 co-orthologues: functional assessment during lateral line development. Dev. Dyn. 239, 29332946.
  • Crow, K.; Amemiya, C. T.; Roth, J.; Wagner, G. P., 2009: Hypermutability of HoxA13A and functional divergence from its paralog are associated with the origin of a novel developmental feature in zebrafish and related taxa (Cypriniformes). Evolution 63, 15741592.
  • Cuvier, G., 1840: Animal Kingdom: arranged according to its organization, forming the basis for a natural history of animals, and introduction to comparative anatomy, Amen Corner, 1840; digitized from copy at Library of Catalonia, 18 Jul 2008 by google ebooks.
  • Cuvier, L. B.; Valenciènnes, A., 1846: Histoire naturelle des poissons. Chez F. G. Levrault, Paris, France.
  • Dahdul, W. M.; Balhoff, J. P.; Engeman, J.; Grande, T.; Hilton, E. J.; Kothari, C.; Lapp, H.; Lundberg, J. G.; Midford, P. E.; Vision, T. J.; Westerfield, M.; Mabee, P. M., 2010a: Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature. PLoS ONE 5, e10708.
  • Dahdul, W. M.; Lundberg, J. G.; Midford, P. E.; Balhoff, J. P.; Lapp, H.; Vision, T. J.; Haendel, M. A.; Westerfield, M.; Mabee, P. M., 2010b: The Teleost Anatomy Ontology: Anatomical representation for the genomics age. Syst. Biol. 59, 369383.
  • Deans, A. R.; Yoder, M. J.; Balhoff, J. P., 2012: Time to change how we describe biodiversity. Trends Ecol. Evol. 27, 7884.
  • Degnan, B. M., 2010: The rise of genomics sheds light on the dawn of animals. Evol Dev. 12, 425427.
  • Dowell, K. G.; McAndrews-Hill, M.S.; Hill, D.P.; Drabkin, H. J.; Blake, J. A., 2009: Integrating text mining into the MGI biocuration workflow. Database 2009, bap019.
  • Driever, W.; Solnica-Krezel, L.; Schier, A.F.; Neuhauss, S. C.; Malicki, J.; Stemple, D.L.; Stainier, D. Y.; Zwartkruis, F.; Abdelilah, S.; Rangini, Z.; Belak, J.; Boggs, C., 1996: A genetic screen for mutations affecting embryogenesis in zebrafish. Development 123, 3746.
  • van Eeden, F. J.; Granato, M.; Schach, U.; Brand, M.; Furutani-Seiki, M.; Haffter, P.; Hammerschmidt, M.; Heisenberg, C. P.; Jiang, Y. J.; Kane, D. A.; Kelsh, R. N.; Mullins, M. C.; Odenthal, J.; Warga, R. M.; Nusslein-Volhard, C., 1996: Genetic analysis of fin formation in the zebrafish, Danio rerio. Development 123, 255262.
  • Faccioli, P.; Stanca, A. M.; Morcia, C.; Terzi, V., 2009: From DNA sequence to plant phenotype: bioinformatics meets crop science. Curr. Bioinform. 4, 173176.
  • Fink, S. V.; Fink, W. L., 1981: Interrelationships of the Ostariophysan fishes (Teleostei). Zool. J. Linn. Soc. 72, 297353.
  • French, C. R.; Erickson, T.; Callander, D.; Berry, K. M.; Koss, R.; Hagey, D. W.; Stout, J.; Wuennenberg-Stapleton, K.; Ngai, J.; Moens, C. B.; Waskiewicz, A. J., 2007: Pbx homeodomain proteins pattern both the zebrafish retina and tectum. BMC Dev. Biol.. 7, 85.
  • Froese, R.; Pauly, D., 2011, 1/20/10. “FishBase.”http://www.fishbase.org/. 2011.
  • Gehring, W. J., 2004: Historical perspective on the development and evolution of eyes and photoreceptors. Int. J. Dev. Biol.. 48, 707717.
  • Ghassibe-Sabbagh, M.; Desmyter, L.; Langenberg, T.; Claes, F.; Boute, O.; Bayet, B.; Pellerin, P.; Hermans, K.; Backx, L.; Mansilla, M. A.; Imoehl, S.; Nowak, S.; Ludwig, K. U.; Baluardo, C.; Ferrian, M.; Mossey, P. A.; Noethen, M.; Dewerchin, M.; Francois, G.; Revencu, N.; Vanwijck, R.; Hecht, J.; Mangold, E.; Murray, J.; Rubini, M.; Vermeesch, J. R.; Poirel, H. A.; Carmeliet, P.; Vikkula, M., 2011: FAF1, a gene that is disrupted in cleft palate and has conserved function in zebrafish. Am. J. Hum. Genet.. 88, 150161.
  • Grande, T.; Poyato-Ariza, F. J., 1999: Phylogenetic relationships of fossil and Recent gonorynchiform fishes (Teleostei: Ostariophysi). Zool. J. Linn. Soc. 125, 197238.
  • Grunwald, D. J.; Eisen, J. S., 2002: Headwaters of the zebrafish -- emergence of a new model vertebrate. Nat. Rev. Genet.. 3, 717724.
  • Harris, M. P.; Rohner, N.; Schwarz, H.; Perathoner, S.; Konstantinidis, P.; Nüsslein-Volhard, C., 2008: Zebrafish eda and edar mutants reveal conserved and ancestral roles of ectodysplasin signaling in vertebrates. PLoS Genet.. 4, e1000206.
  • Howe, D.; Costanzo, M.; Fey, P.; Gojobori, T.; Hannick, L.; Hide, W.; Hill, D. P.; Kania, R.; Schaeffer, M.; St Pierre, S.; Twigger, S.; White, O.; Rhee, S. Y., 2008: Big data: The future of biocuration. Nature 455, 4750.
  • Jiang, Q.; Liu, D.; Gong, Y.; Wang, Y.; Sun, S.; Gui, Y.; Song, H., 2009: Yap is required for the development of brain, eyes, and neural crest in zebrafish. Biochem. Biophys. Res. Commun. 384, 114119.
  • Jimenez-Guri, E.; Pujades, C., 2011: An ancient mechanism of hindbrain patterning has been conserved in vertebrate evolution. Evol. Dev. 13, 3846.
  • Johnson, G. D.; Britz, R., 2005: Leis’ conundrum: homology of the clavus of the ocean sunfishes. 2 Ontogeny of the median fins and axial skeleton of Ranzania laevis (Teleostei, Tetraodontiformes, Molidae). J. Morphol. 266, 1121.
  • Kailola, P. J., 2004: A phylogenetic exploration of the catfish family Ariidae (Otophysi; Siluriformes). The Beagle, Records of the Museums and Art Galleries of the Northern Territory 20, 87166.
  • Kimmel, C. B.; Ullmann, B.; Walker, M.; Miller, C. T.; Crump, J. G., 2003: Endothelin 1-mediated regulation of pharyngeal bone development in zebrafish. Development 130, 13391351.
  • Lamason, R. L.; Mohideen, M.-A. P. K.; Mest, J. R.; Wong, A. C.; Norton, H. L.; Aros, M. C.; Jurynec, M. J.; Mao, X.; Humphreville, V. R.; Humbert, J. E.; Sinha, S.; Moore, J. L.; Jagadeeswaran, P.; Zhao, W.; Ning, G.; Makalowska, I.; McKeigue, P. M.; O’Donnell, D.; Kittles, R.; Parra, E. J.; Mangini, N. J.; Grunwald, D. J.; Shriver, M. D.; Canfield, V. A.; Cheng, K. C., 2005: SLC24A5, a Putative Cation Exchanger, Affects Pigmentation in Zebrafish and Humans. Science 310, 17821786.
  • Laue, K.; Daujat, S.; Crump, J. G.; Plaster, N.; Roehl, H. H.; Kimmel, C. B.; Schneider, R.; Hammerschmidt, M., 2008: The multidomain protein Brpf1 binds histones and is required for Hox gene expression and segmental identity. Development 135, 19351946.
  • Laue, K.; Pogoda, H. M.; Daniel, P. B.; van Haeringen, A.; Alanay, Y.; von Ameln, S.; Rachwalski, M.; Morgan, T.; Gray, M. J.; Breuning, M. H.; Sawyer, G. M.; Sutherland-Smith, A. J.; Nikkels, P. G.; Kubisch, C.; Bloch, W.; Wollnik, B.; Hammerschmidt, M.; Robertson, S. P., 2011: Craniosynostosis and multiple skeletal anomalies in humans and zebrafish result from a defect in the localized degradation of retinoic acid. Am. J. Hum. Genet.. 89, 595606.
  • Lele, Z.; Bakkers, J.; Hammerschmidt, M., 2001: Morpholino phenocopies of the swirl, snailhouse, somitabun, minifin, silberblick, and pipetail mutations. Genesis 30, 190194.
  • Li, W.; Cornell, R. A., 2007: Redundant activities of Tfap2a and Tfap2c are required for neural crest induction and development of other non-neural ectoderm derivatives in zebrafish embryos. Dev. Biol. 304, 338354.
  • Mabee, P.; Ashburner, M.; Cronk, Q.; Gkoutos, G.; Haendel, M.; Segerdell, E.; Mungall, C.; Westerfield, M., 2007a: Phenotype ontologies: the bridge between genomics and evolution. Trends Ecol. Evol. 22, 345350.
  • Mabee, P. M.; Arratia, G.; Coburn, M.; Haendel, M.; Hilton, E. J.; Lundberg, J. G.; Mayden, R. L.; Rios, N.; Westerfield, M., 2007b: Connecting evolutionary morphology to genomics using ontologies: A case study from Cypriniformes including zebrafish. J Exp Zool B Mol Dev Evol. 308B, 655668.
  • Markaki, M.; Tavernarakis, N., 2010: Modeling human diseases in Caenorhabditis elegans. Biotechnol. J.. 5, 12611276.
  • Mayden, R. L., 1989: Phylogenetic studies of North American minnows, with emphasis on the genus Cyprinella (Teleostei: Cypriniformes). Misc. Publ. Mus. Nat. Hist., Univ. Kansas 80, 1189.
  • McGraw, H. F.; Drerup, C. M.; Culbertson, M. D.; Linbo, T.; Raible, D. W.; Nechiporuk, A. V., 2011: Lef1 is required for progenitor cell identity in the zebrafish lateral line primordium. Development 138, 39213930.
  • Miller, C. T.; Yelon, D.; Stainier, D. Y.; Kimmel, C. B., 2003: Two endothelin 1 effectors, hand2 and bapx1, pattern ventral pharyngeal cartilage and the jaw joint. Development 130, 13531365.
  • Miyake, T.; McEachran, J. D., 1991: The morphology and evolution of the ventral gill arch skeleton in batoid fishes (Chondrichthyes: Batoidea). Zool. J. Linn. Soc. 102, 75100.
  • Mungall, C.; Gkoutos, G.; Washington, N.; Lewis, S., Year: Representing phenotypes in OWL. Proceedings of the OWLED 2007 Workshop on OWL: Experience and Directions, Innsbruck, Austria.
  • Nelson, J. S., 2006: Fishes of the World., John Wiley & Sons, Inc., Hoboken, NJ.
  • Neuhauss, S. C.; Solnica-Krezel, L.; Schier, A. F.; Zwartkruis, F.; Stemple, D. L.; Malicki, J.; Abdelilah, S.; Stainier, D. Y.; Driever, W., 1996: Mutations affecting craniofacial development in zebrafish. Development 123, 357367.
  • Pennisi, E., 2011: Will computers crash genomics? Science 331, 666668.
  • Petrey, A. C.; Flanagan-Steet, H.; Johnson, S.; Fan, X.; De la Rosa, M.; Haskins, M. E.; Nairn, A. V.; Moremen, K. W.; Steet, R., 2012: Excessive activity of cathepsin K is associated with cartilage defects in a zebrafish model of mucolipidosis II. Dis Model Mech. 5, 177190.
  • de Pinna, M. C. C., 1993: Higher-level Phylogeny of Siluriformes (Teleostei: Ostariophysi), with a New Classification of the Order. New York, City University of New York. PhD.
  • Pueyo, J. I.; Couso, J. P., 2005: Parallels between the proximal-distal development of vertebrate and arthropod appendages: homology without an ancestor? Curr. Opin. Genet. Dev. 15, 439446.
  • Richards, W. J.; Jones, D. L., 2002: Preliminary classification of the gurnards (Triglidae:Scorpaeniformes). Mar. Freshwater Res. 53, 275282.
  • Santini, F.; Tyler, J., 2002: Phylogeny of the ocean sunfishes (Molidae, Tetraodontiformes), a highly derived group of teleost fishes. Italian Journal of Zoology 69, 3743.
  • Schilling, T. F.; Piotrowski, T.; Grandel, H.; Brand, M.; Heisenberg, C.-P.; Jiang, Y.-J.; Beuchle, D.; Hammerschmidt, M.; Kane, D. A.; Mullins, M. C.; van Eeden, F. J. M.; Kelsh, R. N.; Furutani-Seiki, M.; Granato, M.; Haffter, P.; Odenthal, J.; Warga, R. M.; Trowe, T.; Nüsslein-Volhard, C., 1996: Jaw and branchial arch mutants in zebrafish I: Branchial arches. Development 123, 329344.
  • Schwend, T.; Ahlgren, S. C., 2009: Zebrafish con/disp1 reveals multiple spatiotemporal requirements for Hedgehog-signaling in craniofacial development. BMC Dev. Biol.. 9, 59.
  • Shubin, N.; Tabin, C.; Carroll, S., 2009: Deep homology and the origins of evolutionary novelty. Nature 457, 818823.
  • Smith, G. R., 1992: Phylogeny and biogeography of the Catostomidae, freshwater fishes of North America and Asia. In: Systematics, HIstorical Ecology, and North American Freshwater Fishes. R. L. Mayden (Ed.). Stanford University Press, Stanford, CA, 778826.
  • Sprague, J.; Doerry, E.; Douglas, S.; Westerfield, M., 2001: The Zebrafish Information Network (ZFIN): a resource for genetic, genomic and developmental research. Nucleic Acids Res. 29, 8790.
  • Tanaka, M.; Munsterberg, A.; Anderson, W. G.; Prescott, A. R.; Hazon, N.; Tickle, C., 2002: Fin development in a cartilaginous fish and the origin of vertebrate limbs. Nature 416, 527531.
  • Tuveson, D.; Hanahan, D., 2011: Translational medicine: Cancer lessons from mice to humans. Nature 471, 316317.
  • Walker, M. B.; Miller, C. T.; Coffin Talbot, J.; Stock, D. W.; Kimmel, C. B., 2006: Zebrafish furin mutants reveal intricacies in regulating Endothelin1 signaling in craniofacial patterning. Dev. Biol. 295, 194205.
  • Walker, M. B.; Miller, C. T.; Swartz, M. E.; Eberhart, J. K.; Kimmel, C. B., 2007: phospholipase C, beta 3 is required for Endothelin1 regulation of pharyngeal arch patterning in zebrafish. Dev. Biol. 304, 194207.
  • Warkman, A. S.; Krieg, P. A., 2007: Xenopus as a model system for vertebrate heart development. Semin. Cell Dev. Biol.. 18, 4653.
  • Washington, N. L.; Haendel, M. A.; Mungall, C. J.; Ashburner, M.; Westerfield, M.; Lewis, S. E., 2009: Linking human diseases to animal models using ontology-based phenotype annotation. PLoS Biol. 7, 120.
  • Whitfield, T. T.; Granato, M.; van Eeden, F. J.; Schach, U.; Brand, M.; Furutani-Seiki, M.; Haffter, P.; Hammerschmidt, M.; Heisenberg, C. P.; Jiang, Y. J.; Kane, D. A.; Kelsh, R. N.; Mullins, M. C.; Odenthal, J.; Nusslein-Volhard, C., 1996: Mutations affecting development of the zebrafish inner ear and lateral line. Development 123, 241254.
  • Wiley, E. O.; Johnson, G. D., 2010: A teleost classification based on monophyletic groups. In: Origin and Phylogenetic Interrelationships of Teleosts. J. S. Nelson, H.-P. Schultze, M. V. H. Wilson (Eds.). Verlag Dr. Friedrich Pfeil,München, 123182.
  • Williams, D. M.; Ebach, M. C., 2008: Foundations of Systematics and Biogeography., Springer.
  • Wood, J. D.; Bonath, F.; Kumar, S.; Ross, C. A.; Cunliffe, V. T., 2009: Disrupted-in-schizophrenia 1 and neuregulin 1 are required for the specification of oligodendrocytes and neurones in the zebrafish brain. Hum. Mol. Genet.. 18, 391404.
  • Yan, Y. L.; Miller, C. T.; Nissen, R. M.; Singer, A.; Liu, D.; Kirn, A.; Draper, B.; Willoughby, J.; Morcos, P. A.; Amsterdam, A.; Chung, B. C.; Westerfield, M.; Haffter, P.; Hopkins, N.; Kimmel, C.; Postlethwait, J. H.; Nissen, R., 2002: A zebrafish sox9 gene required for cartilage morphogenesis. Development 129, 50655079.
  • Yoder, M. J.; Miko, I.; Seltmann, K. C.; Bertone, M. A.; Deans, A. R., 2010: A gross anatomy ontology for Hymenoptera. PLoS ONE 5, e15991.
  • Zuniga, E.; Stellabotte, F.; Crump, J. G., 2010: Jagged-Notch signaling ensures dorsal skeletal identity in the vertebrate face. Development 137, 18431852.