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  • Anantharaman, V., Zhang, D. & Aravind, L. 2010. OST-HTH: a novel predicted RNA-binding domain. Biol. Direct. 25, 348.
  • Aravin, A. A., Naumova, N. M., Tulin, A. V., Vagin, V. V., Rozovsky, Y. M. & Gvozdev, V. A. 2001. Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Curr. Biol. 11, 10171027.
  • Aravin, A. A., Lagos-Quintana, M., Yalcin, A., Zavolan, M., Marks, D., Snyder, B., Gaasterland, T., Meyer, J. & Tuschl, T. 2003. The small RNA profile during Drosophila melanogaster development. Dev. Cell 5, 337350.
  • Aravin, A. A., Gaidatzis, D., Pfeffer, S., Lagos-Quintana, M., Landgraf, P., Iovino, N., Morris, P., Brownstein, M. J., Kuramochi-Miyagawa, S., Nakano, T., Chien, M., Russo, J. J., Sheridan, R., Sander, C., Zavolan, M. & Tuschl, T. 2006. A novel class of small RNAs bind to MILI protein in mouse testes. Nature 442, 203207.
  • Aravin, A. A., Sachidanandam, R., Girard, A., Fejes-Toth, K. & Hannon, G. J. 2007. Developmentally regulated piRNA clusters implicate MILI in transposon control. Science 316, 744747.
  • Aravin, A. A., van der Heijden, G. W., Castaneda, J., Vagin, V. V., Hannon, G. J. & Bortvin, A. 2009. Cytoplasmic compartmentalization of the fetal piRNA pathway in mice. PLoS Genet. 5, e1000764.
  • Arkov, A. L. & Ramos, A. 2010. Building RNA-protein granules: insight from the germline. Trends Cell Biol. 20, 482490.
  • Blumenstiel, J. P. & Hartl, D. L. 2005. Evidence for maternally transmitted small interfering RNA in the repression of transposition in Drosophila virilis. Proc. Natl Acad. Sci. USA 102, 1596515970.
  • Bregliano, J. C., Picard, G., Bucheton, A., Pelisson, A., Lavige, J. M. & L’Heritier, P. 1980. Hybrid dysgenesis in Drosophila melanogaster. Science 207, 606611.
  • Brennecke, J., Aravin, A. A., Stark, A., Dus, M., Kellis, M., Sachidanandam, R. & Hannon, G. J. 2007. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128, 10891103.
  • Brennecke, J., Malone, C. D., Aravin, A. A., Sachidanandam, R., Stark, A. & Hannon, G. J. 2008. An epigenetic role for maternally inherited piRNAs in transposon silencing. Science 322, 13871392.
  • Brower-Toland, B., Findley, S. D., Jiang, L., Liu, L., Yin, H., Dus, M., Zhou, P., Elgin, S. C. & Lin, H. 2007. Drosophila PIWI associates with chromatin and interacts directly with HP1a. Genes Dev. 21, 23002311.
  • Bucheton, A. 1990. I transposable elements and I-R hybrid dysgenesis in Drosophila. Trends Genet. 6, 1621.
  • Callebaut, I. & Mornon, J. P. 2010. LOTUS, a new domain associated with small RNA pathways in the germline. Bioinformatics 26, 11401144.
  • Chambeyron, S., Popkova, A., Payen-Groschene, G., Brun, C., Laouini, D., Pelisson, A. & Bucheton, A. 2008. piRNA-mediated nuclear accumulation of retrotransposon transcripts in the Drosophila female germline. Proc. Natl Acad. Sci. USA 105, 1496414969.
  • Chen, C., Nott, T. J., Jin, J. & Pawson, T. 2011. Deciphering arginine methylation: Tudor tells the tale. Nat. Rev. Mol. Cell Biol. 12, 629642.
  • Claycomb, J. M., Batista, P. J., Pang, K. M., Gu, W., Vasale, J. J., van Wolfswinkel, J. C., Chaves, D. A., Shirayama, M., Mitani, S., Ketting, R. F., Conte Jr, D. & Mello, C. C. 2009. The Argonaute CSR-1 and its 22G-RNA cofactors are required for holocentric chromosome segregation. Cell 139, 123134.
  • Cox, D. N., Chao, A. & Lin, H. 2000. piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells. Development 127, 503514.
  • Eddy, E. M. 1975. Germ plasm and the differentiation of the germ cell line. Int. Rev. Cytol. 43, 229280.
  • Findley, S. D., Tamanaha, M., Clegg, N. J. & Ruohola-Baker, H. 2003. Maelstrom, a Drosophila spindle-class gene, encodes a protein that colocalizes with Vasa and RDE1/AGO1 homolog, Aubergine, in nuage. Development 130, 859871.
  • Gillespie, D. E. & Berg, C. A. 1995. Homeless is required for RNA localization in Drosophila oogenesis and encodes a new member of the DE-H family of RNA-dependent ATPases. Genes Dev. 9, 24952508.
  • Girard, A., Sachidanandam, R., Hannon, G. J. & Carmell, M. A. 2006. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 442, 199202.
  • Goodier, J. L. & Kazazian Jr, H. H. 2008. Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell 135, 2335.
  • Grimaud, C., Bantignies, F., Pal-Bhadra, M., Ghana, P., Bhadra, U. & Cavalli, G. 2006. RNAi components are required for nuclear clustering of Polycomb group response elements. Cell 124, 957971.
  • Grivna, S. T., Beyret, E., Wang, Z. & Lin, H. 2006. A novel class of small RNAs in mouse spermatogenic cells. Genes Dev. 20, 17091714.
  • Gunawardane, L. S., Saito, K., Nishida, K. M., Miyoshi, K., Kawamura, Y., Nagami, T., Siomi, H. & Siomi, M. C. 2007. A slicer-mediated mechanism for repeat-associated siRNA 5′ end formation in Drosophila. Science 315, 15871590.
  • Haase, A. D., Fenoglio, S., Muerdter, F., Guzzardo, P. M., Czech, B., Pappin, D. J., Chen, C., Gordon, A. & Hannon, G. J. 2010. Probing the initiation and effector phases of the somatic piRNA pathway in Drosophila. Genes Dev. 24, 24992504.
  • Handler, D., Olivieri, D., Novatchkova, M., Gruber, F. S., Meixner, K., Mechtler, K., Stark, A., Sachidanandam, R. & Brennecke, J. 2011. A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors. EMBO J. 30, 39773993.
  • Harris, A. N. & Macdonald, P. M. 2001. Aubergine encodes a Drosophila polar granule component required for pole cell formation and related to eIF2C. Development 128, 28232832.
  • Houwing, S., Kamminga, L. M., Berezikov, E., Cronembold, D., Girard, A., van den Elst, H., Filippov, D. V., Blaser, H., Raz, E., Moens, C. B., Plasterk, R. H., Hannon, G. J., Draper, B. W. & Ketting, R. F. 2007. A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish. Cell 129, 6982.
  • Kavi, H. H. & Birchler, J. A. 2009. Interaction of RNA polymerase II and the small RNA machinery affects heterochromatin silencing in Drosophila. Epigenetics Chromatin 2, 15.
  • Khurana, J. S. & Theurkauf, W. 2010. piRNAs, transposon silencing, and Drosophila germline development. J. Cell Biol. 191, 905913.
  • Khurana, J. S., Xu, J., Weng, Z. & Theurkauf, W. E. 2010. Distinct functions for the Drosophila piRNA pathway in genome maintenance and telomere protection. PLoS Genet. 6, e1001246.
  • Kidwell, M. G., Kidwekk, J. F. & Sved, J. A. 1977. Hybrid dysgenesis in Drosophila melanogaster: a syndrome of aberrant traits including mutation, sterility and male recombination. Genetics 86, 813833.
  • Kirino, Y., Kim, N., de Planell-Saguer, M. A., Khandros, E., Chiorean, S., Klein, P. S., Rigoutsos, I., Jongens, T. A. & Mourelatos, Z. 2009. Arginine methylation of Piwi proteins catalysed by dPRMT5 is required for Ago3 and Aub stability. Nat. Cell Biol. 11, 652658.
  • Klattenhoff, C., Bratu, D. P., McGinnis-Schultz, N., Koppetsch, B. S., Cook, H. A. & Theurkauf, W. E. 2007. Drosophila rasiRNA pathway mutations disrupt embryonic axis specification through activation of an ATR/Chk2 DNA damage response. Dev. Cell 12, 4555.
  • Klattenhoff, C. & Theurkauf, W. 2008. Biogenesis and germline functions of piRNAs. Development 135, 39.
  • Klattenhoff, C., Xi, H., Li, C., Lee, S., Xu, J., Khurana, J. S., Zhang, F., Schultz, N., Koppetsch, B. S., Nowosielska, A., Seitz, H., Zamore, P. D., Weng, Z. & Theurkauf, W. E. 2009. The Drosophila HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters. Cell 138, 11371149.
  • Klenov, M. S., Lavrov, S. A., Stolyarenko, A. D., Ryazansky, S. S., Aravin, A. A., Tuschl, T. & Gvozdev, V. A. 2007. Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline. Nucleic Acids Res. 35, 54305438.
  • Lau, N. C., Seta, A. G., Kim, J., Kuramochi-Miyagawa, S., Nakano, T., Bartel, D. P. & Kingston, R. E. 2006. Characterization of the piRNA complex from rat testes. Science 313, 363367.
  • Lau, N. C., Robine, N., Martin, R., Chung, W. J., Niki, Y., Berezikov, E. & Kai, T. 2009. Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line. Genome Res. 19, 17761785.
  • Li, C., Vagin, V. V., Lee, S., Xu, J., Ma, S., Xi, H., Seitz, H., Horwich, M. D., Syrzycha, M., Honda, B. M. et al. 2009. Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies. Cell 137, 509521.
  • Liang, L., Diehl-Jones, W. & Lasko, P. 1994. Localization of vasa protein to the Drosophila pole plasm is independent of its RNA-binding and helicase activities. Development 120, 12011211.
  • Lim, A. K. & Kai, T. 2007. Unique germ-line organelle, nuage, functions to repress selfish genetic elements in Drosophila melanogaster. Proc. Natl Acad. Sci. USA 104, 67146719.
  • Lim, A. K., Tao, L. & Kai, T. 2009. piRNAs mediate posttranscriptional retroelement silencing and localization to pi-bodies in the Drosophila germline. J. Cell Biol. 186, 333342.
  • Liu, L., Qi, H., Wang, J. & Lin, H. 2011. PAPI, a novel TUDOR-domain protein, complexes with AGO3, ME31B and TRAL in the muage to silence transposition. Development 138, 18631873.
  • Mahowald, A. P. 1968. Polar granules of Drosophila. II. Ultrastructural changes during early embryogenesis. J. Exp. Zool. 167, 237261.
  • Mahowald, A. P. 1971. Polar granules of Drosophila 3. The continuity of polar granules during the life cycle of Drosophila. J. Exp. Zool. 176, 329343.
  • Malone, C. D., Brennecke, J., Dus, M., Stark, A., McCombie, W. R., Sachidanandam, R. & Hannon, G. J. 2009. Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary. Cell 137, 522535.
  • Malone, C. D. & Hannon, G. J. 2009. Small RNAs as guardians of the genome. Cell 136, 656668.
  • McClintock, B. 1951. Chromosome organization and genic expression. Cold Spring Harb. Symp. Quant. Biol. 16, 1347.
  • Moshkovich, N. & Lei, E. P. 2010. HP1 recruitment in the absence of argonaute proteins in Drosophila. PLoS Genet. 6, e1000880.
  • Nishida, K. M., Okada, T. N., Kamamura, T., Mituyama, T., Kawamura, Y., Inagaki, S., Huang, H., Chen, D., Kodama, T., Siomi, H. & Siomi, M. C. 2009. Functional involvement of Tudor and dPRMT5 in the piRNA processing pathway in Drosophila germlines. EMBO J. 28, 38203831.
  • Nishida, K. M., Saito, K., Kawamura, Y., Nagami-Okada, T., Inagaki, S., Siomi, H. & Siomi, M. C. 2007. Gene silencing mechanisms mediated by Aubergine piRNA complexes in Drosophila male gonads. RNA 13, 19111922.
  • Olivieri, D., Sykora, M. M., Sachidanandam, R., Mechtler, K. & Brennecke, J. 2010. An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila. EMBO J. 29, 33013317.
  • Pal-Bhadra, M., Leibovitch, B. A., Gandhi, S. G., Rao, M., Bhadra, U., Birchler, J. A. & Elgin, S. C. 2004. Heterochromatin silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science 303, 669672.
  • Parker, R. & Sheth, U. 2007. P bodies and the control of mRNA translation and degradation. Mol. Cell 25, 635646.
  • Patil, V. S. & Kai, T. 2010. Repression of retroelements in Drosophila germline via piRNA pathway by the tudor domain protein tejas. Curr. Biol. 20, 724730.
  • Pek, J. W., Lim, A. K. & Kai, T. 2009. Drosophila maelstrom ensures proper germline stem cell linage differentiation by repressing microRNA-7. Dev. Cell 17, 417424.
  • Pek, J. W. & Kai, T. 2011a. A role for vasa in regulating mitotic chromosome condensation in Drosophila. Curr. Biol. 21, 3944.
  • Pek, J. W. & Kai, T. 2011b. Non-coding RNAs enter mitosis: functions, conservation and implications. Cell Div. 28, 6.
  • Pek, J. W. & Kai, T. 2011c. DEAD-box RNA helicae Belle/DDX3 and the RNA interference pathway promote mitotic chromosome segregation. Proc. Natl Acad. Sci. USA 108, 1200712012.
  • Qi, H., Watanabe, T., Ku, H. Y., Liu, N., Zhong, M. & Lin, H. 2011. The Yb body, a major site for Piwi-associated RNA biogenesis and a gateway for Piwi expression and transport to the nucleus in somatic cells. J. Biol. Chem. 286, 37893797.
  • Rangan, P., Malone, C. D., Navarro, C., Newbold, S. P., Hayes, P. S., Sachidanandam, R., Hannon, G. J. & Lehmann, R. 2011. piRNA production requires heterochromatin formation in Drosophila. Curr. Biol. 21, 13731379.
  • Robine, N., Lau, N. C., Balla, S., Jin, Z., Okamura, K., Kuramochi-Miyagawa, S., Blower, M. D. & Lai, E. C. 2009. A broadly conserved pathway generates 3′UTR-directed primary piRNAs. Curr. Biol. 19, 20662076.
  • Rouget, C., Papin, C., Boureux, A., Meunier, A. C., Franco, B., Robine, N., Lai, E. C., Pelisson, A. & Simonelig, M. 2010. Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo. Nature 467, 11281132.
  • Saffman, E. E. & Lasko, P. 1999. Germline development in vertebrates and invertebrates. Cell. Mol. Life Sci. 55, 11411163.
  • Saito, K., Nishida, K. M., Mori, T., Kawamura, Y., Miyoshi, K., Nagami, T., Siomi, H. & Siomi, M. C. 2006. Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome. Genes Dev. 20, 22142222.
  • Saito, K., Inagaki, S., Mituyama, T., Kawamura, Y., Ono, Y., Sakota, E., Kotani, H., Asai, K., Siomi, H. & Siomi, M. C. 2009. A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila. Nature 461, 12961299.
  • Saito, K., Ishizu, H., Komai, M., Kotani, H., Kawamura, Y., Nishida, K. M., Siomi, H. & Siomi, M. C. 2010. Roles for the Yb body components Armitage and Yb in primary piRNA biogenesis in Drosophila. Genes Dev. 24, 24932498.
  • Saito, K. & Siomi, M. C. 2010. Small RNA-mediated quiescence of transposable elements in animals. Dev. Cell 19, 687697.
  • Senti, K. A. & Brennecke, J. 2010. The piRNA pathway: a fly’s perspective on the guardian of the genome. Trends Genet. 26, 499509.
  • Shpiz, S., Olovnikov, I., Sergeeva, A., Lavrov, S., Abramov, Y., Savitsky, M. & Kalmykova, A. 2011. Mechanism of the piRNA-mediated silencing of Drosophila telomeric retrotransposons. Nucleic Acids Res. 39, 87038711.
  • Siomi, M. C., Sato, K., Pezic, D. & Aravin, A. A. 2011. PIWI-interacting small RNAs: the vanguard of genome defence. Nat. Rev. Mol. Cell Biol. 12, 246258.
  • Slotkin, R. K. & Martienssen, R. 2007. Transposable elements and the epigenetic regulation of the genome. Nat. Rev. Genet. 8, 272285.
  • Smith, C. D., Shu, S., Mungall, C. J. & Karpen, G. H. 2007. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Science 316, 15861591.
  • Spradling, A. C. & Rubin, G. M. 1982. Transposition of cloned P elements into Drosophila germ line chromosomes. Science 218, 341347.
  • Szakmary, A., Reedy, M., Qi, H. & Lin, H. 2009. The Yb protein defines a novel organelle and regulates male germline stem cell self-renewal in Drosophila melanogaster. J. Cell Biol. 185, 613627.
  • Thomson, T., Liu, N., Arkov, A., Lehmann, R. & Lasko, P. 2008. Isolation of new polar granule components in Drosophila reveals P body and ER associated proteins. Mech. Dev. 125, 865873.
  • Vagin, V. V., Sigova, A., Li, C., Seitz, H., Gvozdev, V. & Zamore, P. D. 2006. A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313, 320324.
  • Vagin, V. V., Wohlschlegel, J., Qu, J., Jonsson, Z., Huang, X., Chuma, S., Girard, A., Sachidanandam, R., Hannon, G. J. & Aravin, A. A. 2009. Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Turdor family members. Genes Dev. 23, 17491762.
  • van Wolfswinkel, J. C., Claycomb, J. M., Batista, P. J., Mello, C. C., Berezikov, E. & Ketting, R. F. 2009. CDE-1 affects chromosome segregation through uridylation of CSR-1-bound siRNAs. Cell 139, 135148.
  • Wang, Z. & Lin, H. 2005. The division of Drosophila germline stem cells and their precursors requires a specific cyclin. Curr. Biol. 15, 328333.
  • Yin, H. & Lin, H. 2007. An epigenetic activation role of Piwi and a Piwi-associated piRNA in Drosophila melanogaster. Nature 450, 304308.
  • Zamparini, A. L., Davis, M. Y., Malone, C. D., Vieira, E., Zavadil, J., Sachidanandam, R., Hannon, G. J. & Lehmann, R. 2011. Vreteno, a gonad-specific protein, is essential for germline development and primary piRNA biogenesis in Drosophila. Development 138, 40394050.
  • Zhang, D., Xiong, H., Shan, J., Xia, X. & Trudeau, V. L. 2008. Functional insight into Maelstrom in the germline piRNA pathway: a unique domain homologous to the DnaQ-H 3′–5′ exonuclease, its lineage-specific expansion/loss and evolutionarily active site switch. Biol. Direct. 25, 348.