• Amann, R.I., Ludwig, W., and Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143169.
  • DeRito, C.M., Pumphrey, G.M., and Madsen, E.L. (2005) Use of field-based stable isotope probing to identify adapted populations and track carbon flow through a phenol-degrading soil microbial community. Appl Environ Microbiol 71: 78587865.
  • Erauso, G., Reysenbach, A., Godfroy, A., Meunier, J., Crump, B., Partensky, F., et al. (1993) Pyrococcus abyssi sp. nov., a new hyperthermophilic archaeaon isolated from a deep-sea hydrothermal vent. Arch Microbiol 160: 338349.
  • Ginige, M.P., Hugenholtz, P., Daims, H., Wagner, M., Keller, J., and Blackall, L.L. (2004) Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community. Appl Environ Microbiol 70: 588596.
  • Giovannoni, S.J., DeLong, E.F., Olsen, G.J., and Pace, N.R. (1988) Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells. J Bacteriol 170: 720726.
  • Guerquin-Kern, J.L., Wu, T.D., Quintana, C., and Croisy, A. (2005) Progress in analytical imaging of the cell by dynamic secondary ion mass spectrometry (SIMS microscopy). Biochim Biophys Acta 1724: 228238.
  • Kuypers, M.M., and Jorgensen, B.B. (2007) The future of single-cell environmental microbiology. Environ Microbiol 9: 67.
  • Lechene, C., Hillion, F., McMahon, G., Benson, D., Kleinfield, A.M., Kampf, J.P., et al. (2006) High-resolution quantitative imaging of mammalian and bacterial cells using stable isotope mass spectrometry. J Biol 5: 20.
  • Lee, N., Nielsen, P.H., Andreasen, K.H., Juretschko, S., Nielsen, J.L., Schleifer, K.H., and Wagner, M. (1999) Combination of fluorescent in situ hybridization and microautoradiography – a new tool for structure–function analyses in microbial ecology. Appl Environ Microbiol 65: 12891297.
  • Manefield, M., Whiteley, A.S., Griffiths, R.I., and Bailey, M.J. (2002) RNA stable isotope probing, a novel means of linking microbial community function to phylogeny. Appl Environ Microbiol 68: 53675373.
  • Messenger, S., Keller, L., Stadermann, F., Walker, R., and Zinner, E. (2003) Samples of stars beyond the solar system: silicate grains in interplanetary dust. Science 300: 105108.
  • Nielsen, J.L., Christensen, D., Kloppenborg, M., and Nielsen, P.H. (2003) Quantification of cell-specific substrate uptake by probe-defined bacteria under in situ conditions by microautoradiography and fluorescence in situ hybridization. Environ Microbiol 5: 202211.
  • Orphan, V.J., House, C.H., Hinrichs, K.U., McKeegan, K.D., and DeLong, E.F. (2001) Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis. Science 293: 484487.
  • Pernthaler, J., and Amann, R. (2005) Fate of heterotrophic microbes in pelagic habitats: focus on populations. Microbiol Mol Biol Rev 69: 440461.
  • Radajewski, S., Ineson, P., Parekh, N.R., and Murrell, J.C. (2000) Stable-isotope probing as a tool in microbial ecology. Nature 403: 646649.
  • Slodzian, G., Daigne, B., Girard, F., Boust, F., and Hillion, F. (1992) Scanning secondary ion analytical microscopy with parallel detection. Biol Cell 74: 4350.
  • Vigneron, V., Bouchez, T., Bureau, C., Mailly, N., Mazeas, L., Duquennoi, C., et al. (2005) Leachate pre-treatment strategies before recirculation in landfill bioreactors. Water Sci Technol 52: 289297.
  • Williams, P. (2006) Biological imaging using secondary ions. J Biol 5: 18.