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  • Aislabie, J., Balks, M., Astori, N., Stevenson, G., and Symons, R. (1999) Polycyclic aromatic hydrocarbons in fuel-oil contaminated soils, Antarctica. Chemosphere 39: 22012207.
  • Aislabie, J.M., Balks, M.R., Foght, J.M., and Waterhouse, E.J. (2004) Hydrocarbon spills on Antarctic soils: effects and management. Environ Sci Technol 38: 12651274.
  • Aislabie, J., Saul, D.J., and Foght, J.M. (2006) Bioremediation of hydrocarbon-contaminated polar soils. Extremophiles 10: 171179.
  • Bouchez, M., Blanchet, D., and Vandecasteele, J.P. (1995) Degradation of polycyclic aromatic hydrocarbons by pure strains and by defined strain associations: inhibition phenomena and cometabolism. Appl Microbiol Biotechnol 43: 156164.
  • Cerniglia, C.E. (1984) Microbial metabolism of polycyclic aromatic hydrocarbons. Adv Appl Microbiol 30: 3171.
  • Cerniglia, C.E., White, G.L., and Heflich, R.H. (1985) Fungal metabolism and detoxification of polycyclic aromatic hydrocarbons. Arch Microbiol 143: 105110.
  • Chaudhry, Q., Blom-Zandstra, M., Gupta, S., and Joner, E.J. (2005) Utilising the synergy between plants and rhizosphere microorganisms to enhance breakdown of organic pollutants in the environment. Environ Sci Pollut Res Int 12: 3448.
  • Costa, R., Götz, M., Mrotzek, N., Lottmann, J., Berg, G., and Smalla, K. (2006) Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds. FEMS Microbiol Ecol 56: 236249.
  • Curtosi, A., Pelletier, E., Vodopivez, C.L., and MacCormack, W.P. (2007) Polycyclic aromatic hydrocarbons in soil and surface marine sediment near Jubany Station (Antarctica). Role of permafrost as a low-permeability barrier. Sci Total Environ 383: 193204.
  • Debruyn, J.M., Chewning, C.S., and Sayler, G.S. (2007) Comparative quantitative prevalence of Mycobacteria and functionally abundant nidA, nahAc and nagAc dioxygenase genes in coal tar contaminated sediments. Environ Sci Technol 41: 54265432.
  • Dennis, J.J., and Zylstra, G.J. (2004) Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4. J Mol Biol 341: 753768.
  • Dionisi, H.M., Chewning, C.S., Morgan, K.H., Menn, F.M., Easter, J.P., and Sayler, G.S. (2004) Abundance of dioxygenase genes similar to Ralstonia sp. strain U2 nagAc is correlated with naphthalene concentrations in coal tar-contaminated freshwater sediments. Appl Environ Microbiol 70: 39883995.
  • Dunbar, J., White, S., and Forney, L. (1997) Genetic diversity through the looking glass: effect of enrichment bias. Appl Environ Microbiol 63: 13261331.
  • Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783791.
  • Ferrero, M., Llobet-Brossa, E., Lalucat, J., Garcia-Valdes, E., Rosselló-Mora, R., and Bosch, R. (2002) Coexistence of two distinct copies of naphthalene degradation genes in Pseudomonas strains isolated from the western Mediterranean region. Appl Environ Microbiol 68: 957962.
  • Frenot, Y., Chown, S.L., Whinam, J., Selkirk, P.M., Convey, P., Skotnicki, M., and Bergstrom, D.M. (2005) Biological invasions in the Antarctic: extent, impacts and implications. Biol Rev Camb Philos Soc 80: 4572.
  • Gioia, R., Steinnes, E., Thomas, G.O., Mejier, S.N., and Jones, K.C. (2006) Persistent organic pollutants in European background air: derivation of temporal and latitudinal trends. J Environ Monit 8: 700710.
  • Gomes, N.C., Kosheleva, I.A., Abraham, W.R., and Smalla, K. (2005) Effects of the inoculant strain Pseudomonas putida KT2442 (pNF142) and of naphthalene contamination on the soil bacterial community. FEMS Microbiol Ecol 54: 2133.
  • Gomes, N.C., Borges, L.R., Paranhos, R., Pinto, F.N., Krögerrecklenfort, E., Mendonça-Hagler, L.C., and Smalla, K. (2007) Diversity of ndo genes in mangrove sediments exposed to different sources of polycyclic aromatic hydrocarbon pollution. Appl Environ Microbiol 73: 73927399.
  • Habe, H., and Omori, T. (2003) Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria. Biosci Biotechnol Biochem 67: 225243.
  • Heuer, H., Krsek, M., Baker, P., Smalla, K., and Wellington, E.M. (1997) Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl Environ Microbiol 63: 32333241.
  • Iqbal, J., Gisclair, D., McMillin, D.J., and Portier, R.J. (2007) Aspects of petrochemical pollution in southeastern Louisiana (USA): pre-Katrina background and source characterization. Environ Toxicol Chem 26: 20012009.
  • Jones, D.T., Taylor, W.R., and Thornton, J.M. (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8: 275282.
  • Karthikeyan, R., and Kulakow, P.A. (2003) Soil plant microbe interactions in phytoremediation. Adv Biochem Eng Biotechnol 78: 5174.
  • Kauppi, B., Lee, K., Carredano, E., Parales, R.E., Gibson, D.T., Eklund, H., and Ramaswamy, S. (1998) Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase. Structure 6: 571586.
  • Kowalchuk, G.A., Buma, D.S., De Boer, W., Klinkhamer, P.G., and Van Veen, J.A. (2002) Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms. Antonie Van Leeuwenhoek 81: 509520.
  • Laurie, A.D., and Lloyd-Jones, G. (1999) The phn genes of Burkholderia sp. strain RP007 constitute a divergent gene cluster for polycyclic aromatic hydrocarbon catabolism. J Bacteriol 181: 531540.
  • Laurie, A.D., and Lloyd-Jones, G. (2000) Quantification of phnAc and nahAc in contaminated New Zealand soils by competitive PCR. Appl Environ Microbiol 66: 18141817.
  • Luz, A.P., Pellizari, V.H., Whyte, L.G., and Greer, C.W. (2004) A survey of indigenous microbial hydrocarbon degradation genes in soils from Antarctica and Brazil. Can J Microbiol 50: 323333.
  • Ma, Y., Wang, L., and Shao, Z. (2006) Pseudomonas, the dominant polycyclic aromatic hydrocarbon-degrading bacteria isolated from Antarctic soils and the role of large plasmids in horizontal gene transfer. Environ Microbiol 8: 455465.
  • Martins, C.C., Bícego, M.C., Taniguchi, S., and Montone, R.C. (2004) Aliphatic and polycyclic aromatic hydrocarbons in surface sediments in Admiralty Bay, King George Island, Antarctica. Antarctic Sci 16: 117122.
  • Mazzera, D., Hayes, T., Lowenthal, D., and Zielinska, B. (1999) Quantification of polycyclic aromatic hydrocarbons in soil at McMurdo Station, Antarctica. Sci Total Environ 229: 6571.
  • Van Der Meer, J.R., Werlen, C., Nishino, S.F., and Spain, J.C. (1998) Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwater. Appl Environ Microbiol 64: 41854193.
  • Nam, J.W., Nojiri, H., Yoshida, T., Habe, H., Yamane, H., and Omori, T. (2001) New classification system for oxygenase components involved in ring-hydroxylating oxygenations. Biosci Biotechnol Biochem 65: 254263.
  • Newby, D.T., Gentry, T.J., and Pepper, I.L. (2000) Comparison of 2,4-dichlorophenoxyacetic acid degradation and plasmid transfer in soil resulting from bioaugmentation with two different pJP4 donors. Appl Environ Microbiol 66: 33993407.
  • Ni Chadhain, S.M., Norman, R.S., Pesce, K.V., Kukor, J.J., and Zylstra, G.J. (2006) Microbial dioxygenase gene population shifts during polycyclic aromatic hydrocarbon biodegradation. Appl Environ Microbiol 72: 40784087.
  • Rosselló, R. (1992). Universitat de les Illes Balears, PhD Thesis. Palma de Mallorca, Spain.
  • Ruberto, L.A.M., Vázquez, S., and MacCormack, W.P. (2003) Polycyclic aromatic hydrocarbons in fuel-oil contaminated soils, Antarctica. Int Biodeterioration Biodegradation 52: 125.
  • Ruberto, L.A.M., Vázquez, S., and MacCormack, W.P. (2008) Bacteriology of extremely cold soils exposed to hydrocarbon pollution. In Microbiology of Extreme Soils. Dion, P., and Shekhar Nautiyal, C. (eds). Berlin, Heidelberg, Germany: Springer-Verlag, pp. 247274.
  • Saitou, N., and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406425.
  • Shaw, L.J., and Burns, R.G. (2004) Enhanced mineralization of [U-(14)C]2,4-dichlorophenoxyacetic acid in soil from the rhizosphere of Trifolium pratense. Appl Environ Microbiol 70: 47664774.
  • Shuttleworth, K.L., and Cerniglia, C.E. (1995) Environmental aspects of PAH biodegradation. Appl Biochem Biotechnol 54: 291302.
  • Siciliano, S.D., Germida, J.J., Banks, K., and Greer, C.W. (2003) Changes in microbial community composition and function during a polyaromatic hydrocarbon phytoremediation field trial. Appl Environ Microbiol 69: 483489.
  • Skupinska, K., Misiewicz, I., and Kasprzycka-Guttman, T. (2004) Polycyclic aromatic hydrocarbons: physicochemical properties, environmental appearance and impact on living organisms. Acta Pol Pharm 61: 233240.
  • Smalla, K., Wieland, G., Buchner, A., Zock, A., Parzy, J., Kaiser, S., et al. (2001) Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Appl Environ Microbiol 67: 47424751.
  • Sota, M., Yano, H., Ono, A., Miyazaki, R., Ishii, H., Genka, H., et al. (2006) Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase. J Bacteriol 188: 40574067.
  • Stallwood, B., Shears, J., Williams, P.A., and Hughes, K.A. (2005) Low temperature bioremediation of oil-contaminated soil using biostimulation and bioaugmentation with a Pseudomonas sp. from maritime Antarctica. J Appl Microbiol 99: 794802.
  • Takai, K., and Horikoshi, K. (2000) Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes. Appl Environ Microbiol 66: 50665072.
  • Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007) Mega4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 15961599.
  • Vandermeer, K.D., and Daugulis, A.J. (2007) Enhanced degradation of a mixture of polycyclic aromatic hydrocarbons by a defined microbial consortium in a two-phase partitioning bioreactor. Biodegradation 18: 211221.
  • Vinas, M., Sabate, J., Espuny, M.J., and Solanas, A.M. (2005) Bacterial community dynamics and polycyclic aromatic hydrocarbon degradation during bioremediation of heavily creosote-contaminated soil. Appl Environ Microbiol 71: 70087018.
  • Wilson, M.S., Herrick, J.B., Jeon, C.O., Hinman, D.E., and Madsen, E.L. (2003) Horizontal transfer of phnAc dioxygenase genes within one of two phenotypically and genotypically distinctive naphthalene-degrading guilds from adjacent soil environments. Appl Environ Microbiol 69: 21722181.
  • Yen, K.M., and Gunsalus, I.C. (1982) Plasmid gene organization: naphthalene/salicylate oxidation. Proc Natl Acad Sci USA 79: 874878.
  • Yergeau, E., Newsham, K.K., Pearce, D.A., and Kowalchuk, G.A. (2007a) Patterns of bacterial diversity across a range of Antarctic terrestrial habitats. Environ Microbiol 9: 26702682.
  • Yergeau, E., Bokhorst, S.H., Uiskes, A.H.L., Boschker, H.T.S., Aerts, R., and Kowalchuk, G.A. (2007b) Size and structure of bacterial, fungal and nematode communities along an Antarctic environmental gradient. FEMS Microbiol Ecol 59: 436451.
  • Zhang, S., Zhang, W., Wang, K., Shen, Y., Hu, L., and Wang, X. (2008) Concentration, distribution and source apportionment of atmospheric polycyclic aromatic hydrocarbons in the southeast suburb of Beijing, China. Environ Monit Assess (in press): doi:10.1007/s10661-008-0261-2.
  • Zhou, H.W., Guo, C.L., Wong, Y.S., and Tam, N.F. (2006) Genetic diversity of dioxygenase genes in polycyclic aromatic hydrocarbon-degrading bacteria isolated from mangrove sediments. FEMS Microbiol Lett 262: 148157.
  • Zocca, C., Di, G.S., Visentini, F., and Vallini, G. (2004) Biodiversity amongst cultivable polycyclic aromatic hydrocarbon-transforming bacteria isolated from an abandoned industrial site. FEMS Microbiol Lett 238: 375382.