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References

  • Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 33893402.
  • Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R., and Stahl, D.A. (1990) Combination of 16S ribosomal RNA-targeted oligonucleotide probes with flow-cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 19191925.
  • Brock, T.D. (1966) The habitat of Leucothrix mucor, a widespread marine microorganism. Limnol Oceanogr 11: 303307.
  • Bulgheresi, S., Schabussova, I., Chen, T., Mullin, N.P., Maizels, R.M., and Ott, J.A. (2006) A new C-type lectin similar to the human immunoreceptor DC-SIGN mediates symbiont acquisition by a marine nematode. Appl Environ Microbiol 72: 29502956.
  • Casanova, B., Brunet, M., and Segonzac, M. (1993) L'impact d'une épibiose bactérienne sur la morphologie fonctionelle de crevettes associées à l'hydrothermalisme médio-atlantique. Cah Biol Mar 34: 573588.
  • Cavanaugh, C.M., and Robinson, J.J. (1996) CO2 fixation in chemoautotrophic-invertebrate symbioses: expression of form I and form II RubisCO. In Microbial Growth on C1 Compounds. Lidstrom, M.E., and Tabita, F.R. (eds). Dordrecht, the Netherlands: Kluwer, pp. 285292.
  • Cavanaugh, C.M., McKiness, Z.P., Newton, I.L.G., and Stewart, F.J. (2006) Marine chemosynthetic symbioses. In The Prokaryotes: An Evolving Electronic Resource for the Microbial Community. Dworkin, M., Falkow, S.I., Rosenberg, E., Schleifer, K.-H., and Stackebrandt, E. (eds). New York, USA: Springer, pp. 475507.
  • Charlou, J.L., Donval, J.P., Fouquet, Y., Jean-Baptiste, P., and Holm, N. (2002) Geochemistry of high H2 and CH4 vent fluids issuing from ultramafic rocks at the Rainbow hydrothermal field (36°14′N, MAR). Chem Geol 191: 345359.
  • Chu, K.H., Li, C.P., and Ho, H.Y. (2001) The first internal transcribed spacer (ITS-1) of ribosomal DNA as a molecular marker for phylogenetic and population analyses in Crustacea. Mar Biotechnol 3: 355361.
  • Corbari, L., Zbinden, M., Cambon-Bonavita, M.A., Gaill, F., and Compere, P. (2007) Bacterial symbionts and mineral deposits in the branchial chamber of the hydrothermal vent shrimp Rimicaris exoculata: relationship to moult cycle. Aquat Biol 1: 225238.
  • Creasey, S., Rogers, A.D., and Tyler, P.A. (1996) Genetic comparison of two populations of the deep-sea vent shrimp Rimicaris exoculata (Decapoda: Bresiliidae) from the Mid-Atlantic Ridge. Mar Biol 125: 473482.
  • Daims, H., Bruhl, A., Amann, R., Schleifer, K.H., and Wagner, M. (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22: 434444.
  • DeChaine, E.G., Bates, A.E., Shank, T.M., and Cavanaugh, C.M. (2006) Off-axis symbiosis found: characterization and biogeography of bacterial symbionts of Bathymodiolus mussels from Lost City hydrothermal vents. Environ Microbiol 8: 19021912.
  • Diaz, C.L., Melchers, L.S., Hooykaas, P.J.J., Lugtenberg, B.J.J., and Kijne, J.W. (1989) Root lectin as a determinant of host-plant specificity in the Rhizobium-legume symbiosis. Nature 338: 579581.
  • Dubilier, N., Bergin, C., and Lott, C. (2008) Symbiotic diversity in marine animals: the art of harnessing chemosynthesis. Nat Rev Microbiol 6: 725739.
  • Duperron, S., Bergin, C., Zielinski, F., Blazejak, A., Pernthaler, A., McKiness, Z.P., et al. (2006) A dual symbiosis shared by two mussel species, Bathymodiolus azoricus and Bathymodiolus puteoserpentis (Bivalvia: Mytilidae), from hydrothermal vents along the northern Mid-Atlantic Ridge. Environ Microbiol 8: 14411447.
  • Folmer, O., Black, M.B., Hoeh, W.R., Lutz, R.A., and Vrijenhoek, R.C. (1994) DNA primers for amplification of mitochondrial cytochrome C oxidase subunit I from metazoan invertebrates. Mol Mar Biol Biotechnol 3: 294299.
  • Galchenko, V.F., Pimenov, N.V., Lein, A.I., Galkin, S.V., Moskalev, L.I., and Ivanov, M.V. (1989) Autotrophic CO2 assimilation in tissues of prawn Rimicaris exoculata from the Mid-Atlantic Ridge hydrothermal area. Doklady Akademii Nauk SSSR 308: 14781481.
  • Gebruk, A.V., Pimenov, N.V., and Savvichev, A.S. (1993) Feeding specialization of bresiliid shrimps in the TAG site hydrothermal community. Mar Ecol Prog Ser 98: 247253.
  • Gebruk, A.V., Southward, E.C., Kennedy, H., and Southward, A.J. (2000) Food sources, behaviour, and distribution of hydrothermal vent shrimps at the Mid-Atlantic Ridge. J Mar Biol Assoc UK 80: 485499.
  • Gloter, A., Zbinden, M., Guyot, F., Gaill, F., and Colliex, C. (2004) TEM-EELS study of natural ferrihydrite from geological-biological interactions in hydrothermal systems. Earth Planet Sci Lett 222: 947957.
  • Goffredi, S.K., Waren, A., Orphan, V.J., Van Dover, C.L., and Vrijenhoek, R.C. (2004) Novel forms of structural integration between microbes and a hydrothermal vent gastropod from the Indian Ocean. Appl Environ Microbiol 70: 30823090.
  • Goffredi, S.K., Jones, W.J., Erhlich, H., Springer, A., and Vrijenhoek, R.C. (2008) Epibiotic bacteria associated with the recently discovered Yeti crab, Kiwa hirsuta. Environ Microbiol 10: 26232634.
  • Gourdine, J.P., Markiv, A., and Smith-Ravin, J. (2007) The three-dimensional structure of codakine and related marine C-type lectins. Fish Shellfish Immunol 23: 831839.
  • Grabovich, M.Y., Muntyan, M.S., Lebedeva, V.Y., Ustiyan, V.S., and Dubinina, G.A. (1999) Lithoheterotrophic growth and electron transfer chain components of the filamentous gliding bacterium Leucothrix mucor DSM 2157 during oxidation of sulfur compounds. FEMS Microbiol Lett 178: 155161.
  • Gros, O., Liberge, M., Heddi, A., Khatchadourian, C., and Felbeck, H. (2003) Detection of the free-living forms of sulfide-oxidizing gill endosymbionts in the lucinid habitat (Thalassia testudinum environment). Appl Environ Microbiol 69: 62646267.
  • Hall, T. (19972001) BioEdit. [WWW document]. URL http://www.mbio.ncsu.edu/BioEdit/bioedit.html
  • Harmer, T.L., Rotjan, R.D., Nussbaumer, A.D., Bright, M., Ng, A.W., DeChaine, E.G., and Cavanaugh, C.M. (2008) Free-living tube worm endosymbionts found at deep-sea vents. Appl Environ Microbiol 74: 38953898.
  • Harrison, J.S. (2001) Phylogeny, biogeography, and speciation in the genus Austinixa and related genera (Crustacea: Brachyura: Pinnotheridae). PhD Thesis. College Station, TX, USA: Texas A&M University.
  • Haselkorn, T.S., Markow, T.A., and Moran, N.A. (2009) Multiple introductions of the Spiroplasma bacterial endosymbiont into Drosophila. Mol Ecol 18: 12941305.
  • Hunter, R.L., Webb, M.S., Iliffe, T.M., and Bremer, J.R.A. (2008) Phylogeny and historical biogeography of the cave-adapted shrimp genus Typhlatya (Atyidae) in the Caribbean Sea and Western Atlantic. J Biogeogr 35: 6575.
  • Inagaki, F., Takai, K., Nealson, K.H., and Horikoshi, K. (2004) Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from Okinawa Trough hydrothermal sediments. Int J Syst Evol Microbiol 54: 14771482.
  • Jannasch, H.W., Wirsen, C.O., and Molyneaux, S.J. (1991) Chemosynthetic microbial activity at the 23° and 26°N Mid-Atlantic Ridge vent sites. Ridge Events 19.
  • Kimura, H., Sato, M., Sasayama, Y., and Naganuma, T. (2003) Molecular characterization and in situ localization of endosymbiotic 16S ribosomal RNA and RuBisCO genes in the pogonophoran tissue. Mar Biotechnol 5: 261269.
  • Komai, T., and Segonzac, M. (2008) Taxonomic review of the hydrothermal vent shrimp genera Rimicaris Williams & Rona and Chorocaris Martin & Hessler (Crustacea: Decapoda: Caridea: Alvinocarididae). J Shellfish Res 27: 2141.
  • Lee, K.H., and Ruby, E.G. (1994) Effect of the squid host on the abundance and distribution of symbiotic Vibrio fischeri in nature. Appl Environ Microbiol 60: 15651571.
  • Lösekann, T., Robador, A., Niemann, H., Knittel, K., Boetius, A., and Dubilier, N. (2008) Endosymbioses between bacteria and deep-sea siboglinid tubeworms from an Arctic Cold Seep (Haakon Mosby Mud Volcano, Barents Sea). Environ Microbiol 10: 32373254.
  • Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 13631371.
  • Mandel, M.J., Wollenberg, M.S., Stabb, E.V., Visick, K.L., and Ruby, E.G. (2009) A single regulatory gene is sufficient to alter bacterial host range. Nature 458: 215217.
  • Meng, X.H., Wang, Q.Y., Jang, I.K., Liu, P., and Kong, J. (2009) Genetic differentiation in seven geographic populations of the fleshy shrimp Penaeus (Fenneropenaeus) chinensis based on microsatellite DNA. Aquaculture 287: 4651.
  • Miethling, R., Wieland, G., Backhaus, H., and Tebbe, C.C. (2000) Variation of microbial rhizosphere communities in response to crop species, soil origin, and inoculation with Sinorhizobium meliloti L33. Microb Ecol 40: 4356.
  • Muyzer, G., Teske, A., Wirsen, C.O., and Jannash, H.W. (1995) Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch Microbiol 164: 165172.
  • Nyholm, S.V., and McFall-Ngai, M.J. (2004) The winnowing: establishing the squid-Vibrio symbiosis. Nat Rev Microbiol 2: 632642.
  • Page, T.J., Short, J.W., Humphrey, C.L., Hillyer, M.J., and Hughes, J.M. (2008) Molecular systematics of the Kakaducarididae (Crustacea: Decapoda: Caridea). Mol Phylogenet Evol 46: 10031014.
  • Perner, M., Kuever, J., Seifert, R., Pape, T., Koschinsky, A., Schmidt, K., et al. (2007) The influence of ultramafic rocks on microbial communities at the Logatchev hydrothermal field, located 15°N on the Mid-Atlantic Ridge. FEMS Microbiol Ecol 61: 97109.
  • Pimenov, N.V., Kalyuzhnaya, M.G., Khmelenina, V.N., Mityushina, L.L., and Trotsenko, Y.A. (2002) Utilization of methane and carbon dioxide by symbiotrophic bacteria in gills of Mytilidae (Bathymodiolus) from the Rainbow and Logachev hydrothermal fields on the Mid-Atlantic Ridge. Microbiol 71: 587594.
  • Polz, M.F., and Cavanaugh, C.M. (1995) Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site. Proc Natl Acad Sci USA 92: 72327236.
  • Polz, M.F., Robinson, J.J., Cavanaugh, C.M., and Van Dover, C.L. (1998) Trophic ecology of massive shrimp aggregations at a Mid-Atlantic Ridge hydrothermal vent site. Limnol Oceanogr 43: 16311638.
  • Pond, D., Dixon, D., and Sargent, J. (1997) Wax-ester reserves facilitate dispersal of hydrothermal vent shrimps. Mar Ecol Prog Ser 146: 289290.
  • Pond, D.W., Gebruk, A., Southward, E.C., Southward, A.J., Fallick, A.E., Bell, M.V., and Sargent, J.R. (2000) Unusual fatty acid composition of storage lipids in the bresilioid shrimp Rimicaris exoculata couples the photic zone with MAR hydrothermal vent sites. Mar Ecol Prog Ser 198: 171179.
  • Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W.G., Peplies, J., and Glockner, F.O. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 71887196.
  • Rieley, G., Van Dover, C.L., Hedrick, D.B., and Eglinton, G. (1999) Trophic ecology of Rimicaris exoculata: a combined lipid abundance stable isotope approach. Mar Biol 133: 495499.
  • Robinson, J.J., Polz, M.F., Fiala-Medioni, A., and Cavanaugh, C.M. (1998) Physiological and immunological evidence for two distinct C1-utilizing pathways in Bathymodiolus puteoserpentis (Bivalvia: Mytilidae), a dual endosymbiotic mussel from the Mid-Atlantic Ridge. Mar Biol 132: 625633.
  • Ruby, E.G. (2008) Symbiotic conversations are revealed under genetic interrogation. Nat Rev Microbiol 6: 752762.
  • Schmidt, K., Koschinsky, A., Garbe-Schonberg, D., De Carvalho, L.M., and Seifert, R. (2007) Geochemistry of hydrothermal fluids from the ultramafic-hosted Logatchev hydrothermal field, 15°N on the Mid-Atlantic Ridge: temporal and spatial investigation. Chem Geol 242: 121.
  • Schmidt, C., Le Bris, N., and Gaill, F. (2008a) Interactions of deep-sea vent invertebrates with their environment: the case of Rimicaris exoculata. J Shellfish Res 27: 7990.
  • Schmidt, C., Vuillemin, R., Le Gall, C., Gaill, F., and Le Bris, N. (2008b) Geochemical energy sources for microbial primary production in the environment of hydrothermal vent shrimps. Mar Chem 108: 1831.
  • Segonzac, M., Desaintlaurent, M., and Casanova, B. (1993) Enigma of the trophic adaptation of the shrimp Alvinocarididae in hydrothermal areas along the Mid-Atlantic Ridge. Cah Biol Mar 34: 535571.
  • Shank, T.M., Lutz, R.A., and Vrijenhoek, R.C. (1998) Molecular systematics of shrimp (Decapoda: Bresiliidae) from deep-sea hydrothermal vents, I: enigmatic ‘small orange’ shrimp from the Mid-Atlantic Ridge are juvenile Rimicaris exoculata. Mol Mar Biol Biotechnol 7: 8896.
  • Southward, A.J., and Newman, W.A. (1998) Ectosymbiosis between filamentous sulphur bacteria and a stalked barnacle (Scalpellomorpha, Neolepadinae) from the Lau Back Arc Basin, Tonga. Cah Biol Mar 39: 259262.
  • Steedman, H.F. (1957) Polyester wax – new ribboning embedding medium for histology. Nature 179: 13451345.
  • Suzuki, Y., Suzuki, M., Tsuchida, S., Takai, K., Horikoshi, K., Southward, A.J., et al. (2009) Molecular investigations of the stalked barnacle Vulcanolepas osheai and the epibiotic bacteria from the Brothers Caldera, Kermadec Arc, New Zealand. J Mar Biol Assoc UK 89: 727733.
  • Teske, P.R., Froneman, P.W., Barker, N.P., and McQuaid, C.D. (2007) Phylogeographic structure of the caridean shrimp Palaemon peringueyi in South Africa: further evidence for intraspecific genetic units associated with marine biogeographic provinces. Afr J Mar Sci 29: 253258.
  • Tyler, P.A., and Young, C.M. (1999) Reproduction and dispersal at vents and cold seeps. J Mar Biol Assoc UK 79: 193208.
  • Tyler, P.A., and Young, C.M. (2003) Dispersal at hydrothermal vents: a summary of recent progress. Hydrobiologia 503: 919.
  • Van Dover, C.L. (2000) The Ecology of Deep-Sea Hydrothermal Vents. Princeton, NJ, USA: Princeton University Press.
  • Van Dover, C.L., Fry, B., Grassle, J.F., Humphris, S., and Rona, P.A. (1988) Feeding biology of the shrimp Rimicaris exoculata at hydrothermal vents on the Mid-Atlantic Ridge. Mar Biol 98: 209216.
  • Van Dover, C.L., German, C.R., Speer, K.G., Parson, L.M., and Vrijenhoek, R.C. (2002) Marine biology – evolution and biogeography of deep-sea vent and seep invertebrates. Science 295: 12531257.
  • Vrijenhoek, R.C. (1997) Gene flow and genetic diversity in naturally fragmented metapopulations of deep-sea hydrothermal vent animals. J Hered 88: 285293.
  • Williams, A.B., and Rona, P.A. (1986) Two new caridean shrimps (Bresiliidae) from a hydrothermal field on the Mid-Atlantic Ridge. J Crustacean Biol 6: 446462.
  • Wirsen, C.O., Jannasch, H.W., and Molyneaux, S.J. (1993) Chemosynthetic microbial sctivity at Mid-Atlantic Ridge hydrothermal vent sites. J Geophys Res 98: 96939703.
  • Zbinden, M., and Cambon-Bonavita, M.A. (2003) Occurrence of Deferribacterales and Entomoplasmatales in the deep-sea alvinocarid shrimp Rimicaris exoculata gut. FEMS Microbiol Ecol 46: 2330.
  • Zbinden, M., Le Bris, N., Gaill, F., and Compere, P. (2004) Distribution of bacteria and associated minerals in the gill chamber of the vent shrimp Rimicaris exoculata and related biogeochemical processes. Mar Ecol Prog Ser 284: 237251.
  • Zbinden, M., Shillito, B., Le Bris, N., De Montlaur, C.D., Roussel, E., Guyot, F., et al. (2008) New insigths on the metabolic diversity among the epibiotic microbial communitiy of the hydrothermal shrimp Rimicaris exoculata. J Exp Mar Biol Ecol 359: 131140.