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emi2879-sup-0001-si.jpg4827K

Fig. S1. Image showing reads from sample TS-H467 mapped to specific regions of the phage 2972 genome in which SNP-i was detected. Reads are indicated by horizontal bars, the white regions of which match exactly the reference sequence (top line). Polymorphic sites are indicated by coloured bars. Image created using ‘Strainer’ version 33 (Eppley et al., 2007).

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Fig. S2. Image showing reads from sample TS-H467 mapped to specific regions of the phage 2972 genome in which SNP-ii was detected. For details of image interpretation, see caption for Fig. S1.

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Fig. S3. Image showing reads from sample TS-H467 mapped to specific regions of the phage 2972 genome in which SNP-iii was detected. For details of image interpretation, see caption for Fig. S1.

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