Both authors contributed equally to the manuscript.
Oxygen minimum zones harbour novel viral communities with low diversity
Article first published online: 5 OCT 2012
© 2012 Society for Applied Microbiology and Blackwell Publishing Ltd
Volume 14, Issue 11, pages 3043–3065, November 2012
How to Cite
Cassman, N., Prieto-Davó, A., Walsh, K., Silva, G. G. Z., Angly, F., Akhter, S., Barott, K., Busch, J., McDole, T., Haggerty, J. M., Willner, D., Alarcón, G., Ulloa, O., DeLong, E. F., Dutilh, B. E., Rohwer, F. and Dinsdale, E. A. (2012), Oxygen minimum zones harbour novel viral communities with low diversity. Environmental Microbiology, 14: 3043–3065. doi: 10.1111/j.1462-2920.2012.02891.x
- Issue published online: 24 OCT 2012
- Article first published online: 5 OCT 2012
- Accepted manuscript online: 11 SEP 2012 04:52AM EST
- Manuscript Accepted: 2 SEP 2012
- Manuscript Revised: 23 AUG 2012
- Manuscript Received: 5 SEP 2011
- Agouron Research Institute
- Gordon and Betty Moore Fund
- NSF. Grant Number: #1044453
- CONACyT. Grant Number: #120512
- Chilean National Commission for Scientific and Technological Research (CONICYT). Grant Number: 15010007
Fig. S1. Recruitment of inshore ETSP OMZ viromes against Cyanophage P-SSM2 genome from BLASTx comparison (E-value cut-off 10−3) on MG-RAST v.2, showing that the 10 m metagenomic sequences covered most of the genome, whereas at 90 and 200 m only a few well-conserved sequences were identified.
Table S1a. CRISPR/cas analysis of viromes and reciprocal microbiomes.
Table S1b. The DNA signature of the CRISPR and spacer region identified in the metagenomes.
Table S1c. The distribution of the spacer regions in the metagenomes.
Table S2. Percent of sequences similar to subsystems on MG-RAST by BLASTx (E-value = 10−5, bitscore < 40) with representation in all viromes. Lightest green indicates at < 1% of virome sequences in the subsystem; increasing shades of green indicate < 2%, < 3%, and ≥ 4%. Asterisks indicate the Level 2 subsystems that are represented in all viromes.
Table S3. Nitrogen metabolism genes and most similar species associated with the gene match from BLASTx comparison of the SEED-nr database on MG-RAST against the surface water, oxycline and anoxic core viromes of the ESP OMZ.
Table S4. Sulfur metabolism genes and most similar species associated with the gene match from BLASTx comparison of the SEED-nr database on MG-RAST against the surface water, oxycline and anoxic core viromes of the ESP OMZ.
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