SEARCH

SEARCH BY CITATION

References

  • Bligh, H.F.J., Larkin, P.D., Roach, P.S., Jones, C.A., Fu, H. and Park, W.D. (1998) Use of alternate splice sites in granule-bound starch synthase mRNA from low-amylose rice varieties. Plant Mol. Biol. 38, 407415.
  • Bradshaw, J.E. and Mackay, G.R. (1994) Breeding strategies for clonally propagated potatoes. In: Potato Genetics (Brandshaw, J.E. and Mackay, G.R., eds), pp. 467497. Wallingford: CAB International.
  • Cai, X.-L., Wang, Z.-Y., Xing, Y.-Y., Zhang, J.-L. and Hong, M.-M. (1998) Aberrant splicing of intron 1 leads to the heterogeneous 5′ UTR and decreased expression of waxy gene in rice cultivars of intermediate amylose content. Plant J. 14, 459465.
  • Caldwell, D.G., McCallum, N., Shaw, P., Muehlbauer, G.J., Marshall, D.F. and Waugh, R. (2004) A structured mutant population for forward and reverse genetics in barley (Hordeum vulgare L.). Plant J. 40, 143150.
  • Cardi, T., Carputo, D. and Frusciante, L. (1992) In vitro shoot regeneration and chromosome doubling in 2x and 3x potato clones. Am. J. Potato Res. 69, 112.
  • Chen, X., Salamini, F. and Gebhardt, C. (2001) A potato molecular function map for carbohydrate metabolism and transport. Theor. Appl. Genet. 102, 284295.
  • Colbert, T., Till, B.J., Tompa, R., Reynolds, S., Steine, M.N., Yeung, A.T.Z., McCallum, C.M., Comai, L. and Henikoff, S. (2001) High throughput screening for induced point mutations. Plant Phys. 126, 480484.
  • Comai, L. and Henikoff, S. (2006) TILLING: practical single-nucleotide mutation discovery. Plant J. 45, 684694.
  • De Maine, M.J. and Simpson, G. (1999) Somatic chromosome number doubling of selected potato genotypes using callus culture or the colchicines treatment of shoot nodes in vitro. Ann. Appl. Biol. 134, 125130.
  • Domon, E., Fuijita, M. and Ishikawa, N. (2002) The insertion/deletion polymorphisms in the waxy gene of barley genetic resources from East Asia. Theor. Appl. Genet. 104, 132138.
  • Dry, I., Smith, A., Edwards, A., Bhattacharyya, M., Dunn, P. and Martin, C. (1992) Characterization of cDNAs encoding two isoforms of granule-bound starch synthase which show differential expression in developing storage organs of pea and potato. Plant J. 2, 193202.
  • Ellis, R.P., Cochrane, M.P., Dale, M.F.B., Duffus, C.M., Lynn, A., Morrison, I.M., Prentice, R.D.M., Swanston, J.S. and Tiller, S.A. (1998) Starch production and industrial use. J. Sci. Food Agric. 77, 289311.
  • Fleming, M.L.M.H., De Main, M.J. and Powell, W. (1992) Ploidy doubling by callus culture of potato dihaploid leaf explants and the variation in regenerated plants. Ann. Appl. Biol. 121, 183188.
  • Food and Agriculture Organization (FAO) (1995) Q. Bull. 8, 49.
  • Frandsen, N.O. (1958) Züchtung auf Resistenz gegen Kartoffelkrebs. In: Handbuch der Pflanzenzüchtung (Kappert, H. and Rudorf, W., eds), pp. 7197. Berlin: Parey.
  • Furukawa, K., Tagaya, M., Inoye, M., Preiss, J. and Fukui, T. (1990) Identification of lysine 15 at the active site in Escherichia coli glycogen synthase. J. Biol. Chem. 265, 20862090.
  • Gebhardt, C. (2004) Potato genetics: molecular maps and more. In: Biotechnology in Agriculture and Forestry (Lörz, H. and Wenzel, G., eds), pp. 215224. Berlin: Springer-Verlag.
  • Greene, E.A., Codomo, C.A., Taylor, N.E., Henikoff, J.G., Till, B.J., Reynolds, S.H., Enns, L.C., Burtner, C., Johnson, J.E., Odden, A.R., Comai, L. and Henikoff, S. (2003) Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics, 164, 731740.
  • Henikoff, S. and Comai, L. (2003) Single-nucleotide mutations for plant functional genomics. Annu. Rev. Plant Biol. 54, 375401.
  • Hergersberg, M. (1988) Molekulare analyse des waxy gens aus Solanum tuberosum und expression von waxy antisense RNA in transgenen kartoffeln. Dissertation. Köln: Universität Köln.
  • Hirano, H.-Y., Eiguchi, M. and Sano, Y. (1998) A single base change altered the regulation of the waxy gene at the posttranscriptional level during the domestication of rice. Mol. Biol. Evol. 15, 978987.
  • Hofferbert, H.R. (1996) Erstellung und Selektion Dihaploider Genotypen zur Gezielten Kombinationszüchtung bei Kartoffeln. Göttingen: Cuvillier Verlag.
  • Hovenkamp-Hermelink, J.H.M., Jacobsen, E., Ponstein, A.S., Visser, R.G.F., Vos-Scheperkeuter, G.H., Bijmolt, E.W., De Vries, J.N., Witholt, B. and Feenstra, W.J. (1987) Isolation of an amylose-free starch mutant of the potato (Solanum tuberosum L.). Theor. Appl. Genet. 75, 217221.
  • Isshiki, M., Yamamoto, Y., Satoh, H. and Shimamoto, K. (2001) Nonsense-mediated decay of mutant waxy mRNA in rice. Plant Phys. 125, 13881395.
  • Jacobsen, E., Hovenkamp-Hermelink, J.H.M., Krijgsheld, H.T., Nijdam, H., Pijnacker, L.P., Witholt, B. and Feenstra, W.J. (1989) Phenotypic and genotypic characterization of an amylose-free starch mutant of the potato. Euphytica, 44, 4348.
  • Jobling, S.A., Westcott, R.J., Tayal, A., Jeffcoat, R. and Schwall, G.P. (2002) Production of a freeze–thaw-stable potato starch by antisense inhibition of three starch synthase genes. Nat. Biotechnol. 20, 295299.
  • Kleffe, J., Herrmann, K., Vahrson, W., Wittig, B. and Brendel, V. (1996) Logitlinear models for the prediction of splice sites in plant pre-mRNA sequences. Nucleic Acids Res. 24, 47094718.
  • Knight, M.E., Harn, C., Lilley, C.E.R., Guan, H., Singletary, G.W., Forster, C.M., Wasserman, B.P. and Keeling, P.L. (1998) Molecular cloning of starch synthase I from maize (W64) endosperm and expression in Escherichia coli. Plant J. 14, 613622.
  • Koorneef, M., Dellaert, L.W.M. and Van Der Veen, H. (1982) EMS- and radiation-induced mutation frequencies at individual loci in Arabidopsis thaliana (L.) Heyh. Mutat. Res. 93, 109123.
  • Kossmann, J. and Lloyd, J. (2000) Understanding and influencing starch biochemistry. Crit. Rev. Biochem. Mol. Biol. 35, 141196.
  • Kuipers, A., Jacobsen, E. and Visser, R. (1994) Formation and deposition of amylose in the potato tuber starch granule are affected by the reduction of granule-bound starch synthase gene expression. Plant Cell, 6, 4352.
  • Larkin, P.D. and Park, W.D. (1999) Transcript accumulation and utilization of alternate and non-consensus splice sites in rice granule-bound starch synthase are temperature-sensitive and controlled by a single-nucleotide polymorphism. Plant Mol. Biol. 40, 719727.
  • Larsson, C.T., Hofvander, P., Khoshnoodi, J., Ek, B., Rask, L. and Larsson, H. (1996) Three isoforms of starch synthase and two isoforms of branching enzyme are present in potato tuber starch. Plant Sci. 117, 916.
  • Mason-Gamer, R.J., Weil, C.F. and Kellogg, E.A. (1998) Granule-bound starch synthase: structure, function, and phylogenetic utility. Mol. Biol. Evol. 15, 16581673.
  • McCallum, C.M., Comai, L., Greene, E.A. and Henikoff, S. (2000) Targeted screening for induced mutations. Nat. Biotechnol. 18, 455457.
  • Mejlhede, N., Kyjovska, Z., Backes, G., Burhenne, K., Rasmussen, S.K. and Jahoor, A. (2006) EcoTILLING for the identification of allelic variation in the powdery mildew resistance genes mlo and mla of barley. Plant Breed. 125, 461467.
  • Ng, P.C. and Henikoff, S. (2003) SIFT: predicting amino acid changes that affect protein function. Nucleic Acids Res. 31, 38123814.
  • Rickert, A.M., Kim, J.H., Meyer, S., Nagel, A., Ballvora, A., Oefner, P.J. and Gebhardt, C. (2003) First-generations SNP/InDel markers tagging loci for pathogen resistance in the potato genome. Plant Biotechnol. J. 1, 399410.
  • Röper, H. (1996) Application of starch and its derivatives. Carbohydrates, 15, 2230.
  • Rothacker, D., Schreiter, J. and Junges, W. (1966) Untersuchungen zur erzeugung und auslese dihaploider sämlinge bei Solanum tuberosum. Eur. Pot. J. 9, 99110.
  • Schwall, G.P., Safford, R., Westcott, R.J., Jeffcoat, R., Tayal, A., Shi, Y.C., Gidley, M.J. and Jobling, S.A. (2000) Production of very-high-amylose potato starch by inhibition of SBE A and B. Nat. Biotechnol. 18, 551554.
  • Sega, G.A. (1984) A review of the genetic effects of ethyl methanesulfonate. Mutat. Res. 134, 113142.
  • Slade, A.J., Fuerstenberg, S.I., Loeffler, D., Steine, M.N. and Facciotti, D. (2005) A reverse genetic, nontransgenic approach to wheat crop improvement by TILLING. Nat. Biotechnol. 23, 7581.
  • Sood, R., English, M.A., Jones, M.P., Mullikin, J., Wang, D.-M., Anderson, M., Wu, D., Chandrasekharappa, S.C., Yu, J., Zhang, J. and Liu, P.P. (2006) Methods for reverse genetic screening in zebrafish by resequencing and TILLING. Methods, 39, 220227.
  • Taylor, N.E. and Greene, E.A. (2003) PARSESNP: A tool for the analysis of nucleotide polymorphisms. Nucleic Acids Res. 31, 38083811.
  • Thill, C.A. and Peloquin, S.J. (1995) A breeding method for accelerated development of cold chipping clones in potato. Euphytica, 84, 7380.
  • Thompson, R.D. and Kirch, H.-H. (1992) The S locus of flowering plants: when self-rejection is self-interest. Trends Genet. 8, 551554.
  • Till, B.J., Reynolds, S.H., Weil, C., Springer, N., Burtner, C., Young, K., Bowers, E., Codomo, C.A., Enns, L.C., Odden, A.R., Greene, E.A., Comai, L. and Henikoff, S. (2004) Discovery of induced point mutations in maize genes by TILLING. BMC Plant Biol. 4, 12.
  • Till, B.J., Cooper, J., Tai, T.H., Colowit, P., Greene, E.A., Henikoff, S. and Comai, L. (2007) Discovery of chemically induced mutations in rice by TILLING. BMC Plant Biol. 7, 19.
  • Van der Leij, F.R., Visser, R.G.F., Ponstein, A.S., Jacobsen, E. and Feenstra, W.J. (1991) Sequence of the structural gene for granule-bound starch synthase of potato (Solanum tuberosum L.) and evidence for a single point deletion in the amf allele. Mol. Gen. Genet. 228, 240248.
  • Van de Wal, M.H.B.J., Jacobsen, E. and Visser, R.G.F. (2001) Multiple allelism as a control mechanism in metabolic pathways: GBSSI allelic composition affects the activity of granule-bound starch synthase I and starch composition in potato. Mol. Genet. Genom. 265, 10111021.
  • Vogel, E.W. and Natarajan, A.T. (1995) DNA damage and repair in somatic and germ cells in vivo. Mutat. Res. 330, 183208.
  • Wenzel, G., Schieder, O., Przewozny, T., Sopory, S.K. and Melchers, G. (1979) Comparison of single cell culture derived Solanum tuberosum L. and a model for their application in breeding programs. Theor. Appl. Genet. 55, 4955.