SEARCH

SEARCH BY CITATION

References

  • Abdeen A. and Miki B. (2009) The pleiotropic effects of the bar gene and glufosinate on the Arabidopsis transcriptome. Plant Biotechnol. J.7, 266282.
  • Aragao, F.J.L., Sarokin, L., Vianna, G.R. and Rech, E.L. (2000) Selection of transgenic meristematic cells utilizing a herbicidal molecule results in the recovery of fertile transgenic soybean [Glycine max (L.) Merril] plants at a high frequency. Theor. Appl. Genet. 101, 16.
  • Baker, J.M., Hawkins, N.D., Ward, J.L., Lovegrove, A., Napier, J.A., Shewry, P.R. and Beale, M.H. (2006) A metabolomics study of substantial equivalence of field-grown genetically modified wheat. Plant Biotechnol. J. 4, 381392.
  • Baudo, M.M., Lyons, R., Powers, S., Pastori, G.M., Edwards, K.J., Holdsworth, M.J. and Shewry, P.R. (2006) Transgenesis has less impact on the transcriptome of wheat grain than conventional breeding. Plant Biotechnol. J. 4, 369380.
  • Bregitzer, P., Cooper, L.D., Hayes, P.M., Lemaux, P.G., Singh, J. and Sturbaum, A.K. (2007) Viability and bar expression are negatively correlated in Oregon Wolfe Barley dominant hybrids. Plant Biotechnol. J. 5, 381388.
  • Catchpole, G.S., Beckmann, M., Enot, D.P., Mondhe, M., Zywicki, B., Taylor, J., Hardy, N., Smith, A., King, R.D., Kell, D.B., Fiehn, O. and Draper, J. (2005) Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops. Proc. Natl. Acad. Sci. USA, 102, 14 45814 462.
  • Causier, B., Castillo, R., Zhou, J., Ingram, R., Xue, Y., Schwarz-Sommer, Z. and Davies, B. (2005) Evolution in Action: following function in duplicated floral homeotic genes. Curr. Biol. 15, 15081512.
  • Cellini, F., Chesson, A., Coquhoun, I., Constable, A., Davies, H.V., Engel, K.H., Gatehouse, A.M.R., Kärenlampi, S., Kok, E.J., Leguay, J.-J., Lehesranta, S., Noteborn, H.P.J.M., Pederson, J. and Smith, M. (2004) Unintended effects and their detection in genetically modified crops. Food Chem. Toxicol. 42, 10891125.
  • Cheng, K.C., Beaulieu, J., Iquira, E., Belzile, F.J., Fortin, M.G. and Stromvik, M.V. (2008) Effect of transgenes on global gene expression in soybean is within the natural range of variation of conventional cultivars. J. Agric. Food Chem. 56, 30573067.
  • Corpillo, D., Gardini, G., Vaira, A.M., Basso, M., Aime, S., Accotto, G.P. and Fasano, M. (2004) Proteomics as a tool to improve investigation of substantial equivalence in genetically modified organisms: the case of a virus-resistant tomato. Proteomics, 4, 193200.
  • Coutu, C., Brandle, J., Brown, D., Brown, K., Miki, B., Simmonds, J. and Hegedus, D.D. (2007) pORE; a modular binary vector series suited for both monocot and dicot plant transformation. Transgenic Res. 16, 771781.
  • Darbani, B., Eimanifar, A., Stewart, C.N. and Camargo, W.N. (2007) Methods to produce marker-free transgenic plants. Biotechnol. J. 2, 8390.
  • Daxinger, L., Hunter, B., Sheikh, M., Jauvion, V., Gasciolli, V., Vaucheret, H., Matzke, M. and Furner, I. (2007) Unexpected silencing effects from T-DNA tags in Arabidopsis. Trends Plant Sci. 13, 46.
  • Day, C.D., Lee, E., Kobayashi, J., Holappa, L.D., Albert, H. and Ow, D.W. (2000) Transgene integration into the same chromosome location can produce alleles that express at a predictable level, or alleles that are differentially silenced. Genes Devel. 14, 28692880.
  • El Ouakfaoui, S. and Miki, B. (2005) The stability of the Arabidopsis transcriptome in transgenic plants expressing the marker genes nptII and uidA. Plant J. 41, 791800.
  • Endo, S., Kasahara, T., Sugita, K., Matsunaga, E. and Ebinuma, H. (2001) The isopentyl transferase gene is effective as a selectable marker gene for plant transformation in tobacco (Nicotiana tabacum cv Petite Havana SR1). Plant Cell Rep. 20, 6066.
  • Fobert, P.R., Labbe, H., Cosmopolous, J., Gottlob-McHugh, S., Ouellet, T., Hattori, J., Sunohara, G., Iyer, V.N. and Miki, B. (1994) T-DNA tagging of a seed coat-specific cryptic promoter in tobacco. Plant J. 6, 567577.
  • Foster, E., Hattori, J., Labbe, H., Ouellet, T., Fobert, P., James, L. and Miki, B. (1999) A tobacco cryptic promoter, tCUP, revealed by T-DNA tagging. Plant Mol. Biol. 41, 4555.
  • Gudynaite-Savitch, L., Johnson, D. and Miki, B. (in press) Strategies to mitigate transgene – promoter interactions. Plant Biotechnol. J.
  • Kakimoto, T. (1996) CKI1, a histidine kinase homolog implicated in cytokinin signal transduction. Science, 8, 982985.
  • Kim, S.I., Veena and Gelvin, S.B. (2007) Genome-wide analysis of Agrobacterium T-DNA integration sites in the Arabidopsis genome generated under non-selective conditions. Plant J. 51, 779791.
  • Koncz, C., Martini, N., Mayerhofer, R., Koncz-Kalman, Z., Korber, H., Redei, G.P. and Schell, J. (1989) High-frequency T-DNA-mediated gene tagging in plants. Proc. Natl. Acad. Sci. USA, 86, 84678471.
  • Kristensen, C., Morant, M., Olsen, C.E., Ekstrom, C.T., Galbraith, D.W., Moller, B.L. and Bak, S. (2005) Metabolic engineering of dhurrin in transgenic Arabidopsis plants with marginal inadvertent effects on the metabolome and transcriptome. Proc. Natl. Acad. Sci. USA, 102, 17791784.
  • Kuiper, H.A., Kleter, G.A., Noteborn, H.P.J.M. and Kok, E.J. (2001) Assessment of the food safety issues related to genetically modified foods. Plant J. 27, 503528.
  • Lehesranta, S.J., Davies, H.V., Shepherd, L.V.T., Nunan, N., McNicol, J.W., Auriola, S., Koistinen, K.M., Suomalainen, S., Kokko, H.I. and Karenlampi, S.O. (2005) Comparison of tuber proteomes of potato varieties, landraces and genetically modified lines. Plant Physiol. 138, 16901699.
  • Lin, R., Ding, L., Casola, C., Ripoli, D.R., Feschotte, C. and Wang, H. (2007) Transposase-derived transcription factors regulate light signalling in Arabidopsis. Science, 318, 13021305.
  • Louwerse, J.D., Van Lier, M.C.M., Van Der Steen, D.M., De Vlaam, C.M.T., Hooykaas, P.J.J. and Vergunst, A.C. (2007) Stable recombinase-mediated cassette exchange in Arabidopsis using Agrobacterium tumefaciens. Plant Physiol. 145, 12821293.
  • Malik, K., Wu, K., Li, X.-Q., Martin-Heller, T., Hu, M., Foster, E., Tian, L., Wang, C., Ward, K., Jordan, M., Brown, D., Gleddie, S., Simmonds, D., Zheng, S., Simmonds, J. and Miki, B. (2002) A constitutive gene expression system derived from the tCUP cryptic promoter elements. Theor. Appl. Genet. 105, 505514.
  • Manabe, Y., Tinker, N., Colville, A. and Miki, B. (2007) CSR1, the sole target of imidazolinone herbicide in Arabidopsis thaliana. Plant Cell Physiol. 48, 13401358.
  • Mathews, H., Clendennen, S.K., Caldwell, C.G., Liu, X.L., Connors, K., Matheis, N., Schuster, D.K., Menasco, D.J., Wagoner, W., Lightner, J. and Wagner, D.R. (2003) Activation tagging in tomato identifies a transcriptional regulator of anthocyanin biosynthesis, modification, and transport. Plant Cell, 15, 16891703.
  • Mentewab, A. and Stewart, C.N. (2005) Overexpression of an Arabidopsis thaliana ABC transporter confers kanamycin resistance to transgenic plants. Nat. Biotechnol. 23, 11771180.
  • Miki, B. (2008) Marker genes and promoters. In: Plant Biotechnology and Genetics: Principles, Techniques and Applications (Neal StewartJr, C.N., ed.), pp. 217243. Hoboken, NJ: John Wiley and Sons.
  • Miki, B. and McHugh, S. (2004) Selectable marker genes in transgenic plants: applications, alternatives and biosafety. J. Biotechnol. 107(3), 193232.
  • Nanto, K., Yamada-Watanabe, K. and Ebinuma, H. (2005) Agrobacterium-mediated RMCE approach for gene replacement. Plant Biotechnol. J. 3, 203214.
  • Nap, J.-P., Bijvoet, J. and Stiekema, W.J. (1992) Biosafety of kanamycin-resistant transgenic plants. Transgenic Res. 1, 239249.
  • Organization of Economic Co-operation and Development (OECD) (1993) Safety Evaluation of Foods Derived by Modern Biotechnology, Concepts and Principles. Paris: OECD. URL http://www.oecd.org/dsti/sti/s_t/biotech/prod/modern.htm [accessed on 21 May 2002].
  • Olszewski, N.E., Martin, F.B. and Ausubel, F.M. (1988) Specialized binary vector for plant transformation: expression of the Arabidopsis thaliana AHAS gene in Nicotiana tabacum. Nucleic Acids Res. 16, 10 76510 781.
  • Ow, D.W. (2005) 2004 SIVB congress symposium proceeding: transgene management via multiple site-specific recombination systems. In Vitro Cell Dev Biol. Plant, 41, 21132219.
  • Ramessar, K., Peremarti, A., Gomez-Galera, S., Naqvi, S., Moralejo, M., Munoz, P., Capell, T. and Christou, P. (2007) Biosafety and risk assessment framework for selectable marker genes in transgenic crop plants: a case of the science not supporting the politics. Transgenic Res. 16, 261280.
  • Rijpkema, A.S., Gerats, T. and Vandenbussche, M. (2007) Evolutionary complexity of MADS complexes. Curr. Opin. Plant Biol. 10, 3238.
  • Rommens, C.M. (2006) Kanamycin resistance in plants: an unexpected trait controlled by a potentially multifaceted gene. Trends Plant Sci. 11, 317319.
  • Shiu, S.-H. and Bleecker, A.B. (2001) Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc. Natl. Acad. Sci. USA, 98, 10 76310 768.
  • Singh, B.K. and Shaner, D.L. (1995) Biosynthesis of branched chain amino acids: from test tube to field. Plant Cell, 7, 935944.
  • Smyth, S. and McHughen, A. (2008) Regulating innovative crop technologies in Canada: the case of regulating genetically modified crops. Plant Biotechnol. J. 6, 213225.
  • Soltis, D.E., Ma, H., Frohlich, M.W., Soltis, P.S., Albert, V.A., Oppenheimer, D.G., Altman, N.S., DePamphilis, C. and Leebens-Mack, J. (2007) The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression. Trends Plant Sci. 12, 358367.
  • Sugita, K., Kasahara, T., Matsunaga, E. and Ebinuma, H. (2000) A transformation vector for the production of marker-free transgenic plants containing a single copy transgene at high frequency. Plant J. 22, 461469.
  • Tan, S., Evans, R.R., Dahmer, M.L., Singh, B.K. and Shaner, D.L. (2005) Imidazolinone-tolerant crops: history, current status and future. Pest Manag. Sci. 61, 246357.
  • Verma, D. and Daniell, H. (2007) Chloroplast vector systems for biotechnology applications. Plant Physiol. 145, 11291143.
  • Weigel, D., Ahn, J.H., Blázquez, M.A., Borevitz, J.O., Christensen, S.K., Fankhauser, C., Ferrándiz, C., Kardailsky, I., Malancharuvil, E.J., Neff, M.M., Nguyen, J.T., Sato, S., Wang, Z.-Y., Xia, Y., Dixon, R.A., Harrison, M.J., Lamb, C.J., Yanofsky, M.F. and Chory, J. (2000) Activation tagging in Arabidopsis. Plant Physiol. 122, 10031013.
  • Yoo, S.Y., Bomblies, K., Yoo, S.K., Yang, J.W., Choi, M.C., Lee, J.S., Weigel, D. and Ahn, J.H. (2005) The 35S promoter used in a selectable marker gene of a plant transformation vector affects the expression of the transgene. Planta, 221, 523530.
  • Yuan, J.S., Tranel, P.J. and Stewart, C.N. Jr (2006) Non-target-site herbicide resistance: a family business. Trends Plant Sci. 12, 613.
  • Yuan, J.S., Galbraith, D.W., Dai, S.Y., Griffin, P. and Stewart, C.N., Jr (2008) Plant systems biology comes of age. Trends Plant Sci. 13, 165171.
  • Zuo, J., Niu, Q.-W., Ikeda, Y. and Chua, N.-H. (2002) Marker-free transformation: increasing transformation frequency by the use of regeneration-promoting genes. Curr. Opin. Biotechnol. 13, 173180.