SEARCH

SEARCH BY CITATION

References

  • Achaz, G., Coissac, E., Viari, A. and Netter, P. (2000) Analysis of intrachromosomal repeats in yeast Saccharomyces cerevisiae: a possible model for their origin. Mol. Biol. Evol. 17, 12681275.
  • Alfares, W., Bouguennec, A., Balfourier, F., Gay, G., Bergès, H., Vautrin, S., Sourdille, P., Bernard, M. and Feuillet, C. (2009) Fine mapping and marker development for the crossability gene SKr on chromosome 5BS of hexaploid wheat (Triticum aestivum L.). Genetics, 183, 469481.
  • Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 33893402.
  • Argueso, C.T., Ferreira, F.J. and Kieber, J.J. (2009) Environmental perception avenues: the interaction of cytokinin and environmental response pathways. Plant Cell. Environ. 32, 11471160.
  • Ashikari, M., Sakakibara, H., Lin, S., Yamamoto, T., Takahashi, T., Nishimura, A., Angeles, E.R., Qian, Q., Kitano, H. and Matsuoka, M. (2005) Cytokinin oxidase regulates rice grain production. Science, 309, 741745.
  • Bartrina, I., Otto, E., Strnad, M., Werner, T. and Schmülling, T. (2011) Cytokinin regulates the activity of reproductive meristems, flower organ size, ovule formation, and thus seed yield in Arabidopsis thaliana. Plant Cell, 23, 6980.
  • Baum, M., Grando, S., Backes, G., Jahoor, A., Sabbagh, A. and Ceccarelli, S. (2003) QTLs for agronomic traits in the Mediterranean environment identified in recombinant inbred lines of the cross ‘Arta’ × ‘H. spontaneum 14-1′. Theor. Appl. Genet. 107, 12151225.
  • Beales, J., Turner, A., Griffiths, S., Snape, J.W. and Laurie, D.A. (2007) A pseudo-response regulator is missexpressed in the photoperiod insensitive Ppd-D1a mutant of wheat (Triticum aestivum L.). Theor. Appl. Genet. 115, 721733.
  • Bennetzen, J.L., Ma, J. and Devos, K.M. (2005) Mechanisms of recent genome size variation in flowering plants. Ann. Bot. 95, 127132.
  • Bilyeu, K.D., Cole, J.L., Laskey, J.G., Riekhof, W.R., Esparza, T.J., Kramer, M.D. and Morris, R.O. (2001) Molecular and biochemical characterization of a cytokinin oxidase from maize. Plant Physiol. 125, 378386.
  • Bolot, S., Abrouk, M., Masood-Quraishi, U., Stein, N., Messing, J., Feuillet, C. and Salse, J. (2009) The ‘inner circle’ of the cereal genome. Curr. Opin. Plant Biol. 12, 119125.
  • Brownlee, B.G., Hall, R.H. and Whitty, C.D. (1975) 3-Methyl-2-butenal: an enzymatic degradation product of the cytokinin N6-(Δ2-isopentenyl)adenine. Can. J. Biochem. 53, 3741.
  • Bruggmann, R., Bharti, A.K., Gundlach, H., Lai, J., Young, S., Pontaroli, A.C., Wei, F., Haberer, G., Fuks, G., Du, C., Raymond, C., Estep, M.C., Liu, R., Bennetzen, J.L., Chan, A.P., Rabinowicz, P.D., Quackenbush, J., Barbazuk, W.B., Wing, R.A., Birren, B., Nusbaum, C., Rounsley, S., Mayer, K.F. and Messing, J. (2006) Uneven chromosome contraction and expansion in the maize genome. Genome Res. 16, 12411251.
  • Brugière, N., Jiao, S., Hantke, S., Zinselmeier, C., Roessler, J.A., Niu, X., Jones, R.J. and Habben, J.E. (2003) Cytokinin oxidase gene expression in maize is localized to the vasculature, and is induced by cytokinins, abscisic acid, and abiotic stress. Plant Physiol. 132, 12281240.
  • Chiapparino, E., .Donini, P., Reeves, J., Tuberosa, R. and O’Sullivan, D.M. (2006) Distribution of ß-amalayse I haplotypes among European cultivated barleys. Mol. Breed. 18, 341354.
  • Chutimanitsakun, Y., Nipper, R.W., Cuesta-Marcos, A., Cistué, L., Corey, A., Filichkina, T., Johnson, E.A. and Hayes, P.M. (2011) Construction and application for QTL analysis of a restriction site associated DNA (RAD) linkage map in barley. BMC Genomics, 12, e4.
  • Close, T.J., Bhat, P.R., Lonardi, S., Wu, Y., Rostoks, N., Ramsay, L., Druka, A., Stein, N., Svensson, J.T., Wanamaker, S. et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics, 10, e582.
  • Cockram, J., Jones, H., Leigh, F.J., O’Sullivan, D., Powell, W., Laurie, D.A. and Greenland, A.J. (2007) Control of flowering time in temperate cereals: genes, domestication and sustainable productivity. J. Exp. Bot. 58, 12311244.
  • Cockram, J., White, J., Zuluaga, D.L., Smith, D., Comadran, J., Macaulay, M., Luo, Z., Kearsey, M.J., Werner, P., Harrap, D. et al. (2010a) Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome. Proc. Natl Acad. Sci. USA, 107, 2161121616.
  • Cockram, J., Howells, R. and O’Sullivan, D.M. (2010b) Segmental duplication harbouring group IV CONSTANS-like genes in cereals. Genome, 53, 231240.
  • Comai, L., Young, K., Till, B., Reynolds, S., Green, E.A., Codomo, C.A., Enns, L.C., Johnson, J.E., Burtner, C., Odden, A.R. and Henikoff, S. (2003) Efficient discovery of DNA polymorphisms in natural populations by EcoTILLING. Plant J. 37, 778786.
  • Costa, J.M., Corey, A., Hayes, P.M., Jobet, C., Kleinhofs, A., Kopisch-Obusch, A., Kramer, S.F., Kudrna, D., Li, M., Riera-Lizarazu, O. et al. (2001) Molecular mapping of the Oregon Wolfe Barleys: a phenotypically polymorphic doubled-haploid population. Theor. Appl. Genet. 103, 415424.
  • D’Aloia, M., Bonhomme, D., Bouché, F., Tamseddak, K., Ormenese, S., Torti, S., Coupland, G. and Périlleux, C. (2011) Cytokinin promotes flowering of Arabidopsis via transcriptional activation of the FT paralogue TSF. Plant J. 65, 972979.
  • Devos, K.M. (2005) Updating the ‘crop circle’. Curr. Opin. Plant Biol. 8, 155162.
  • Felsenstein, J. (1989) PHYLIP—phylogeny inference package (version 3.2). Cladistics, 5, 164166.
  • Feng, D.S., Wang, H.G., Zhang, X.S., Kong, L.R., Tian, J.C. and Li, X.F. (2008) Using an inverse PCR method to clone the wheat cytokinin oxidase/dehydrogenase gene TaCKX1. Plant Mol. Biol. Rep. 26, 143155.
  • Foote, T., Griffiths, S., Allouis, S. and Moore, G. (2004) Construction and analysis of a BAC library in the grass Brachypodium sylvaticum: its use as a tool to bridge the gap between rice and wheat in elucidating gene content. Funct. Integr. Genomics, 4, 2633.
  • Gale, M.D. and Devos, K.M. (1998) Comparative genetics in the grasses. Proc. Natl Acad. Sci. USA, 95, 19711974.
  • Galuszka, P., Frébortova, J., Werner, T., Yamada, M., Strnad, M., Schmülling, T. and Frébort, I. (2004) Cytokinin oxidase/dehydrogenase genes in barley and wheat: cloning and heterologous expression. Eur. J. Biochem. 271, 39904002.
  • Galuszka, P., Frébortova, J., Luhova, L., Bilyeu, K.D., English, J.T. and Frébort, I. (2005) Tissue localization of cytokinin dehydrogenase in maize: possible involvement of quinone species generated from plant phenolics by other enzymatic systems in the catalytic reaction. Plant Cell Physiol. 46, 716728.
  • Goff, S.A., Cone, K.C. and Chandler, V.L. (1992) Functional analysis of the transcriptional activator encoded by the maize B gene: evidence for a direct functional interaction between two classes of regulatory proteins. Genes Dev. 6, 864875.
  • Guivarc’h, A., Rembur, J., Gotez, M., Roitsch, T., Noin, M., Schülling, T. and Chriqui, D. (2002) Local expression of the ipt gene in transgenic tobacco (Nicotiana tabacum L. cv. SR1) axillary buds establishes a role for cytokinins in tuberization and sink formation. J. Exp. Bot. 53, 621629.
  • Houba-Hérin, N., Pethe, C., d’Alayer, J. and Laloue, M. (1999) Cytolinin oxidase from Zea mays: purification, cDNA cloning and expression in moss protoplasts. Plant J. 17, 615626.
  • Huang, S., Sirikhachornkit, A., Su, X., Faris, J., Gill, B., Haselkorn, R. and Gornicki, P. (2002) Phylogenetic analysis of the acetyl-CoA carboxylase and 3-phosphoglycerate kinase loci in wheat and other grasses. Plant Mol. Biol. 48, 805820.
  • International Brachypodium Initiative (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature, 11, 763768.
  • Kowalska, M., Galuszka, P., Frébortova, J., Šebela, M., Béres, T., Hluska, T., Šmehilová, M., Bilyeu, K.D. and Frébot, I. (2010) Vacuolar and cytosolic cytokinin dehydrogenases of Arabidopsis thaliana: heterologous expression, purification and properties. Phytochemistry, 71, 19701978.
  • Krzywinski, M., Schein, J., Birol, I., Connors, J., Gascoyne, R., Horsman, D., Jones, S.J. and Marra, M.A. (2009) Circos: an information aesthetic for comparative genomics. Genome Res. 19, 16391645.
  • Kudo, T., Kiba, T. and Sakakibara, H. (2010) Metabolism and long-distance translocation of cytokinins. J. Integr. Biol 52, 5360.
  • Kuiper, D. (1993) Sink strength: established and regulated by plant growth regulators. Plant Cell Environ. 16, 10251026.
  • Malito, E., Coda, A., Bilyeu, K.D., Fraaije, M.W. and Mattevi, A. (2004) Structure of michaelis and product complexes of plant cytokinin dehydrogenase: implications for flavoenzyme catalysis. J. Mol. Biol. 341, 12371249.
  • McCallum, C.M., Comai, L., Greene, E.A. and Henikoff, S. (2000) Targeted screening for induced mutations. Nat. Biotechnol. 18, 455457.
  • Paterson, A.H., Bowers, J.E. and Chapman, B.A. (2004) Ancient polyploidization predating the divergence of the cereals, and its consequences for comparative genomics. Proc. Natl Acad. Sci. USA, 101, 99039908.
  • Paterson, A.H., Bowers, J.E., Bruggmann, R., Dubchak, I., Grimwood, J., Gundlach, H., Haberer, G., Hellsten, U., Mitros, T. et al. (2009) The Sorghum bicolour genome and the diversification of grasses. Nature, 457, 551556.
  • Sabot, F., Guyot, R., Wicker, T., Chantret, N., Aubin, B., Chalhoub, B., Leroy, P., Sourdille, P. and Bernard, M. (2005) Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations. Mol. Genet. Genomics, 274, 119130.
  • Sakakibara, H. (2006) Cytokinins: activity, biosynthesis and translocation. Annu. Rev. Plant Biol. 57, 431449.
  • Salse, J., Bolot, S., Throude, M., Jouffe, V., Piegu, B., Quraishi, U.M., Calcagno, T., Cooke, R., Delseny, M. and Feuillet, C. (2008) Identification and characterization of shared duplications between rice and wheat provide new insights into grass genome evolution. Plant Cell, 20, 1124.
  • Schmülling, T., Werner, T., Riefler, M., Krupkova, E. and Bartrina y Manns, I. (2003) Structure and function of cytokinin oxidase/dehydrogenase genes in maize, rice, Arabidopsis and other species. J. Plant. Res. 116, 241252.
  • Schnable, P.S., Ware, D., Fulton, R.S., Stein, J.C., Wei, F., Pasternak, S., Liang, C., Zhang, J., Fulton, L., Graves, T.A. et al. (2009) The B73 maize genome: complexity, diversity and dynamics. Science, 326, 11121115.
  • Sears, E. (1966) Nullisomic-tetrasomic combinations in hexaploid wheat. In Chromosome Manipulation and Plant Genetics (Riley, R. and Lewis, K.R., eds), pp. 2945. London: Oliver & Boyd.
  • Smehilova, M., Galuszka, P., Bilyeu, K.D., Jaworek, P., Kowalska, M., Sebelam, M., Sedlarova, M., English, J.T. and Frebort, I. (2009) Subcellular localization and biochemical comparison of cytosolic and secreted cytokinin dehydrogenase enzymes from maize. J. Exp. Bot. 60, 27012712.
  • Somers, D., Isaac, P. and Edwards, K. (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor. Appl. Genet. 109, 11051114.
  • Thiel, T., Graner, A., Waugh, R., Grosse, I., Close, T.J. and Stein, N. (2009) Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice. BMC Evol. Biol. 9, e209.
  • Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 46734680.
  • Turner, A., Beales, J., Faure, S., Dunford, R.P. and Laurie, D.A. (2005) The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. Science, 310, 10311034.
  • Van Ooijen, J.W. and Voorrips, R.E. (2004) JoinMap 3.0: Software for the Calculation of Genetic Linkage Maps in Experimental Populations. Wageningen, The Netherlands: CPRO-DLO.
  • Vaseva-Gemisheva, I., Lee, D., Alexieva, V. and Karanov, E. (2004) Cytokinin oxidase/dehydrogenase in Pisum sativum plants during vegetative development: influence of UV-B irradiation and high temperature on the enzymatic activity. Plant Growth Regul. 46, 199208.
  • Vercruyssen, L., Gonzalez, N., Werner, T., Schmülling, T. and Inzé, D. (2011) Combining enhanced root and shot growth reveals crosstalk between pathways that control plant organ size in Arabidopsis. Plant Physiol. 155, 13391352.
  • Vyroubalová, Š., Václavíková, K., Turečková, V., Novák, O., Smehilová, M., Hluska, T., Ohnoutková, L., Frébort, I. and Galuszka, P. (2009) Characterization of new maize genes putatively involved in CK metabolism and their expression during osmotic stress in relation with cytokinin levels. Plant Physiol. 151, 433477.
  • Waterhouse, A.M., Procter, J.B., Martin, D.M.A., Clamp, M. and Barton, G.J. (2009) Jalview Version 2—a multiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 11891191.
  • Wei, F., Coe, E., Nelson, W., Bharti, A.K., Engler, F., Butler, E., Kim, H., Goicoechea, J.L., Chen, M., Lee, S. et al. (2007) Physical and genetic structure of the maize genome reflects its complex evolutionary history. PLoS Genet. 3, e123.
  • Werner, T., Motyka, V., Laucou, V., Smets, R., Van Onckelen, H. and Schmülling, T. (2003) Cytokinin-deficient transgenic Arabidopsis plants show multiple developmental alterations indicating opposite functions of cytokinins in the regulation of shoot and root meristem activity. Plant Cell, 15, 25322550.
  • Werner, T., Holst, K., Pörs, Y., Guivarc’h, A., Mustroph, A., Chriqui, D., Grimm, B. and Schmülling, T. (2008) Cytokinin deficiency causes distinct changes of sink and source parameters in tobacco shoots and roots. J. Exp. Bot. 59, 26592672.
  • Yu, J., Wang, J., Lin, W., Li, S., Li, H., Zhou, J., Ni, P., Dong, W., Hu, S., Zeng, C. et al. (2005) The genomes of Oryza sativa: a history of duplications. PLoS Biol. 3, e38.
  • Zalewski, W., Galuszka, P., Gasparis, S., Orczyk, W. and Nadolska-Orczyk, A. (2010) Silencing of the HvCKX1 gene decreases the cytokinin oxidase/dehydrogenase level in barley and leads to higher plant productivity. J. Exp. Bot. 61, 18391851.
  • Zhang, J., Liu, W., Yang, X., Gao, A., Li, X., Wu, X. and Li, L. (2010) Isolation and characterization of two putative cytokinin oxidase genes related to grain number per spike in wheat. Mol. Biol. Rep. 38, 23372347.