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  • Allen, A.M., Barker, G.L.A., Berry, S.T., Coghill, J.A., Gwilliam, R., Kirby, S., Robinson, P., Brenchley, R.C., D’Amore, R., McKenzie, N., Waite, D., Hall, A., Bevan, M., Hall, N. and Edwards, K.J. (2011) Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.). Plant Biotechnol. J. 9, 10861099.
  • Bentley, A., MacLennan, B., Calvo, J. and Dearolf, C.R. (2000) Targeted recovery of mutations in Drosophila. Genetics, 156, 11691173.
  • Blomstedt, C.K., Gleadow, R.M., O’Donnell, N., Naur, P., Jensen, K., Laursen, T., Olsen, C.E., Stuart, P., Hamill, J.D., Møller, B.L. and Neale, A.D. (2012) A combined biochemical screen and TILLING approach identifies mutations in Sorghum bicolor L. Moench resulting in acyanogenic forage production. Plant Biotechnol. J. 10, 5466.
  • Cao, J., Schneeberger, K., Ossowski, S., Guenther, T., Bender, S., Fitz, J., Koenig, D., Lanz, C., Stegle, O., Lippert, C., Wang, X., Ott, F., Mueller, J., Alonso-Blanco, C., Borgwardt, K., Schmid, K.J. and Weigel, D. (2011) Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat. Genet. 43, 956963.
  • Colbert, T., Till, B.J., Tompa, R., Reynolds, S., Steine, M.N., Yeung, A.T., McCallum, C.M., Comai, L. and Henikoff, S. (2001) High-throughput screening for induced point mutations. Plant Physiol. 126, 480484.
  • Comai, L. and Henikoff, S. (2006) TILLING: practical single-nucleotide mutation discovery. Plant J. 45, 684694.
  • Comai, L., Young, K., Till, B.J., Reynolds, S.H., Greene, E.A., Codomo, C.A., Enns, L.C., Johnson, J.E., Burtner, C., Odden, A.R. and Henikoff, S. (2004) Efficient discovery of DNA polymorphisms in natural populations by Ecotilling. Plant J. 37, 778786.
  • Cooper, J.L., Greene, E.A., Till, B.J., Codomo, C.A., Wakimoto, B.T. and Henikoff, S. (2008a) Retention of induced mutations in a Drosophila reverse-genetic resource. Genetics, 180, 661667.
  • Cooper, J.L., Till, B.J. and Henikoff, S. (2008b) Fly-TILL Reverse genetics using a living point mutation resource. Fly, 2, 300302.
  • Cooper, J., Till, B., Laport, R., Darlow, M., Kleffner, J., Jamai, A., El-Mellouki, T., Liu, S., Ritchie, R., Nielsen, N., Bilyeu, K., Meksem, K., Comai, L. and Henikoff, S. (2008c) TILLING to detect induced mutations in soybean. BMC Plant Biol. 8, 9.
  • Dahmani-Mardas, F., Troadec, C., Boualem, A., Leveque, S., Alsadon, A.A., Aldoss, A.A., Dogimont, C. and Bendahmane, A. (2010) Engineering melon plants with improved fruit shelf life using the TILLING approach. PLoS One, 5, e15776.
  • Dong, C., Dalton-Morgan, J., Vincent, K. and Sharp, P. (2009a) A modified TILLING method for wheat breeding. Plant Genome, 2, 3947.
  • Dong, C., Vincent, K. and Sharp, P. (2009b) Simultaneous mutation detection of three homoeologous genes in wheat by High Resolution Melting analysis and Mutation Surveyor®. BMC Plant Biol. 9, 143.
  • Draper, B.W., McCallum, C.M., Stout, J.L., Slade, A.J. and Moens, C.B. (2004) A high-throughput method for identifying N-ethyl-N-nitrosourea (ENU)-induced point mutations in zebrafish. Methods Cell Biol. 77, 91112.
  • Gady, A., Hermans, F., Van de Wal, M., van Loo, E., Visser, R. and Bachem, C. (2009) Implementation of two high through-put techniques in a novel application: detecting point mutations in large EMS mutated plant populations. Plant Methods, 5, 13.
  • Gilchrist, E. and Haughn, G. (2010) Reverse genetics techniques: engineering loss and gain of gene function in plants. Brief Funct Genomics, 9, 103110.
  • Gilchrist, E.J., Haughn, G.W., Ying, C.C., Otto, S.P., Zhuang, J., Cheung, D., Hamberger, B., Aboutorabi, F., Kalynyak, T., Johnson, L., Bohlmann, J., Ellis, B.E., Douglas, C.J. and Cronk, Q.C.B. (2006) Use of Ecotilling as an efficient SNP discovery tool to survey genetic variation in wild populations of Populus trichocarpa. Mol. Ecol. 15, 13671378.
  • Greene, E.A., Codomo, C.A., Taylor, N.E., Henikoff, J.G., Till, B.J., Reynolds, S.H., Enns, L.C., Burtner, C., Johnson, J.E., Odden, A.R., Comai, L. and Henikoff, S. (2003) Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics, 164, 731740.
  • Hädrich, N., Gibon, Y., Schudoma, C., Altmann, T., Lunn, J.E. and Stitt, M. (2011) Use of TILLING and robotised enzyme assays to generate an allelic series of Arabidopsis thaliana mutants with altered ADP-glucose pyrophosphorylase activity. J. Plant Physiol. 168, 13951405.
  • Haendle, J. (1979) X-ray-induced mitotic recombination in Drosophila melanogaster. IV. Distribution within eu- and heterochromatin. Mutat. Res. 62, 467475.
  • van Harten, A. (1998) Mutation Breeding: Theory and Practical Applications. Cambridge, UK: Cambridge University Press.
  • Henikoff, S. and Comai, L. (2003) Single-nucleotide mutations for plant functional genomics. Annu. Rev. Plant Biol. 54, 375401.
  • Henikoff, S., Till, B.J. and Comai, L. (2004) TILLING. Traditional mutagenesis meets functional genomics. Plant Physiol. 135, 630636.
  • Ibiza, V.P., Canizares, J. and Nuez, F. (2010) EcoTILLING in Capsicum species: searching for new virus resistances. BMC Genom. 11, 631.
  • Jain, S., Till, B., Suprasanna, P. and Roux, N. (2011) Mutations and Cultivar Development of Banana. In Banana Breeding, Progress and Challenges (Tenkouano, M., ed.), pp. 203217. Boca Raton, FL: CRC Press.
  • Jansky, S.H. and Thompson, D.M. (1990) The effect of flower removal on potato tuber yield. Can. J. Plant Sci. 70, 12231225.
  • Jin, J., Chen, L., Yao, M., Wang, X., Ma, C., Jin, J.Q., Chen, L., Yao, M.Z., Wang, X.C. and Ma, C.L. (2010) Simplification of EcoTILLING technique for tea plant. J. Tea Sci. 30, 1926.
  • Jones, M.G., Fish, N. and Lindsey, K. (1988) Plant tissue culture. Methods Mol. Biol. 4, 499517.
  • Jones, A.C., Austin, J., Hansen, N., Hoogendoorn, B., Oefner, P.J., Cheadle, J.P. and O’Donovan, M.C. (1999) Optimal temperature selection for mutation detection by denaturing HPLC and comparison to single-stranded conformation polymorphism and heteroduplex analysis. Clin. Chem. 45, 11331140.
  • Julio, E., Laporte, F., Reis, S., Rothan, C. and Dorlhac de Borne, F. (2008) Reducing the content of nornicotine in tobacco via targeted mutation breeding. Mol. Breed. 21, 369381.
  • Klekowski, E. and Kazarinovafukshansky, N. (1984) Shoot apical meristems and mutation – selective loss of disadvantageous cell genotypes. Am. J. Bot. 71, 2834.
  • Kurowska, M., Daszkowska-Golec, A., Gruszka, D., Marzec, M., Szurman, M., Szarejko, I. and Maluszynski, M. (2011) TILLING – a shortcut in functional genomics. J. Appl. Genet. 52, 371390.
  • Lawrence, R.J. and Pikaard, C.S. (2003) Transgene-induced RNA interference: a strategy for overcoming gene redundancy in polyploids to generate loss-of-function mutations. Plant J. 36, 114121.
  • Le Signor, C., Savois, V., Aubert, G., Verdier, J., Nicolas, M., Pagny, G., Moussy, F., Sanchez, M., Baker, D., Clarke, J. and Thompson, R. (2009) Optimizing TILLING populations for reverse genetics in Medicago truncatula. Plant Biotechnol. J. 7, 430441.
  • Li, X., Song, Y.J., Century, K., Straight, S., Ronald, P., Dong, X.N., Lassner, M. and Zhang, Y.L. (2001) A fast neutron deletion mutagenesis-based reverse genetics system for plants. Plant J. 27, 235242.
  • Martin, B., Ramiro, M., Martinez-Zapater, J. and Alonso-Blanco, C. (2009) A high-density collection of EMS-induced mutations for TILLING in Landsberg erecta genetic background of Arabidopsis. BMC Plant Biol. 9, 147.
  • Mba, C., Afza, R., Jankowcz-Cieslak, J., Bado, S., Matijevic, M., Huynh, O. and Till, B. (2009) Enhancing genetic diversity through induced mutagenesis in vegetatively propagated plants. In Induced Plant Mutations in the Genomic Era (Qy, S., ed.), pp. 293296. Rome: Food and Agriculture Organization of the United Nations.
  • Mba, C., Afza, R., Bado, S. and Jain, S. (2010) Induced mutagenesis in plants using physical and chemical agents. In Plant Cell Culture: Essential Methods (Davey, M. and Anthony, P., eds), pp. 111130. New York: John Wiley & Sons, Ltd.
  • McCallum, C.M., Comai, L., Greene, E.A. and Henikoff, S. (2000) Targeted screening for induced mutations. Nat. Biotechnol. 18, 455457.
  • McKey, D., Elias, M., Pujol, B. and Duputié, A. (2010) The evolutionary ecology of clonally propagated domesticated plants. New Phytol. 186, 318332.
  • Missirian, V., Comai, L. and Filkov, V. (2011) Statistical mutation calling from sequenced overlapping DNA pools in TILLING experiments. BMC Bioinformatics, 12, 287.
  • Moens, C.B., Donn, T.M., Wolf-Saxon, E.R. and Ma, T.P. (2008) Reverse genetics in zebrafish by TILLING. Brief Funct. Genomic. Proteomic. 7, 454459.
  • Muth, J., Hartje, S., Twyman, R.M., Hofferbert, H.-R., Tacke, E. and Prüfer, D. (2008) Precision breeding for novel starch variants in potato. Plant Biotechnol. J. 6, 576584.
  • Nieto, C., Piron, F., Dalmais, M., Marco, C.F., Moriones, E., Gomez-Guillamon, M.L., Truniger, V., Gomez, P., Garcia-Mas, J., Aranda, M.A. and Bendahmane, A. (2007) EcoTILLING for the identification of allelic variants of melon eIF4E, a factor that controls virus susceptibility. BMC Plant Biol. 7, 34.
  • Parry, M.A.J., Madgwick, P.J., Bayon, C., Tearall, K., Hernandez-Lopez, A., Baudo, M., Rakszegi, M., Hamada, W., Al-Yassin, A., Ouabbou, H., Labhilili, M. and Phillips, A.L. (2009) Mutation discovery for crop improvement. J. Exp. Bot. 60, 28172825.
  • Perry, J.A., Wang, T.L., Welham, T.J., Gardner, S., Pike, J.M., Yoshida, S. and Parniske, M. (2003) A TILLING reverse genetics tool and a web-accessible collection of mutants of the legume Lotus japonicus. Plant Physiol. 131, 866871.
  • Perry, J., Welham, T., Cheminant, S., Parniske, M. and Wang, T. (2005) TILLING. In Lotus japonicus Handbook (Márquez, A.J., Stougaard, J., Udvardi, M., Parniske, M., Spaink, H., Saalbach, G., Webb, J. and Chiurazzi, M., eds), pp. 197210. Dordrecht, The Netherlands: Springer.
  • Perry, J., Brachmann, A., Welham, T., Binder, A., Charpentier, M., Groth, M., Haage, K., Markmann, K., Wang, T.L. and Parniske, M. (2009) TILLING in Lotus japonicus identified large allelic series for symbiosis genes and revealed a bias in functionally defective ethyl methanesulfonate alleles toward glycine replacements. Plant Physiol. 151, 12811291.
  • Piron, F., Nicolai, M., Minoia, S., Piednoir, E., Moretti, A., Salgues, A., Zamir, D., Caranta, C. and Bendahmane, A. (2010) An induced mutation in tomato eIF4E leads to immunity to two potyviruses. PLoS One, 5, e11313.
  • Rashid, M., He, G.Y., Yang, G.X. and Khurram, Z. (2011) Relevance of tilling in plant genomics. Aust. J. Crop Sci. 5, 411420.
  • Ririe, K.M., Rasmussen, R.P. and Wittwer, C.T. (1997) Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal. Biochem. 245, 154160.
  • Rogers, C., Wen, J., Chen, R. and Oldroyd, G. (2009) Deletion-based reverse genetics in Medicago truncatula. Plant Physiol. 151, 10771086.
  • Sato, Y., Shirasawa, K., Takahashi, Y., Nishimura, M. and Nishio, T. (2006) Mutant selection from progeny of gamma-ray-irradiated rice by DNA heteroduplex cleavage using Brassica petiole extract. Breeding Sci., 56, 179183.
  • Sestili, F., Botticella, E., Bedo, Z., Phillips, A. and Lafiandra, D. (2010) Production of novel allelic variation for genes involved in starch biosynthesis through mutagenesis. Mol. Breed. 25, 145154.
  • Smits, B.M.G., Mudde, J., Plasterk, R.H.A. and Cuppen, E. (2004) Target-selected mutagenesis of the rat. Genomics, 83, 332334.
  • Stephenson, P., Baker, D., Girin, T., Perez, A., Amoah, S., King, G. and Ostergaard, L. (2010) A rich TILLING resource for studying gene function in Brassica rapa. BMC Plant Biol. 10, 62.
  • Suzuki, T., Eiguchi, M., Kumamaru, T., Satoh, H., Matsusaka, H., Moriguchi, K., Nagato, Y. and Kurata, N. (2008) MNU-induced mutant pools and high performance TILLING enable finding of any gene mutation in rice. Mol Genet Genomics, 279, 213223.
  • Tadege, M., Wang, T.L., Wen, J., Ratet, P. and Mysore, K.S. (2009) Mutagenesis and beyond! Tools for understanding legume biology. Plant Physiol. 151, 978984.
  • Takos, A., Lai, D., Mikkelsen, L., Abou Hachem, M., Shelton, D., Motawia, M.S., Olsen, C.E., Wang, T.L., Martin, C. and Rook, F. (2010) Genetic screening identifies cyanogenesis-deficient mutants of Lotus japonicus and reveals enzymatic specificity in hydroxynitrile glucoside metabolism. Plant Cell, 22, 16051619.
  • Taylor, N.J., Edwards, M., Kiernan, R.J., Davey, C.D.M., Blakesley, D. and Henshaw, G.G. (1996) Development of friable embryogenic callus and embryogenic suspension culture systems in cassava (Manihot esculenta Crantz). Nat. Biotechnol. 14, 726730.
  • Till, B.J., Colbert, T., Tompa, R., Enns, L.C., Codomo, C.A., Johnson, J.E., Reynolds, S.H., Henikoff, J.G., Greene, E.A., Steine, M.N., Comai, L. and Henikoff, S. (2003a) High-throughput TILLING for functional genomics. Methods Mol. Biol. 236, 205220.
  • Till, B.J., Reynolds, S.H., Greene, E.A., Codomo, C.A., Enns, L.C., Johnson, J.E., Burtner, C., Odden, A.R., Young, K., Taylor, N.E., Henikoff, J.G., Comai, L. and Henikoff, S. (2003b) Large-scale discovery of induced point mutations with high-throughput TILLING. Genome Res. 13, 524530.
  • Till, B.J., Colbert, T., Codomo, C., Enns, L., Johnson, J., Reynolds, S.H., Henikoff, J.G., Greene, E.A., Steine, M.N., Comai, L. and Henikoff, S. (2006a) High-throughput TILLING for Arabidopsis. In Methods in Molecular Biology (Salinas, J.S.J.J., ed.), pp. 127135. Clifton: Humana Press Inc.
  • Till, B.J., Zerr, T., Bowers, E., Greene, E.A., Comai, L. and Henikoff, S. (2006b) High-throughput discovery of rare human nucleotide polymorphisms by Ecotilling. Nucleic Acids Res. 34, e99.
  • Till, B.J., Zerr, T., Comai, L. and Henikoff, S. (2006c) A protocol for TILLING and Ecotilling in plants and animals. Nat Protoc. 1, 24652477.
  • Till, B.J., Cooper, J., Tai, T.H., Colowit, P., Greene, E.A., Henikoff, S. and Comai, L. (2007) Discovery of chemically induced mutations in rice by TILLING. BMC Plant Biol. 7, 19.
  • Till, B.J., Jankowicz-Cieslak, J., Sagi, L., Huynh, O.A., Utsushi, H., Swennen, R., Terauchi, R. and Mba, C. (2010) Discovery of nucleotide polymorphisms in the Musa gene pool by Ecotilling. Theor. Appl. Genet. 121, 13811389.
  • Triques, K., Piednoir, E., Dalmais, M., Schmidt, J., Le Signor, C., Sharkey, M., Caboche, M., Sturbois, B. and Bendahmane, A. (2008) Mutation detection using ENDO1: application to disease diagnostics in humans and TILLING and Eco-TILLING in plants. BMC Mol. Biol. 9, 42.
  • Tsai, H., Howell, T., Nitcher, R., Missirian, V., Watson, B., Ngo, K.J., Lieberman, M., Fass, J., Uauy, C., Tran, R.K., Khan, A.A., Filkov, V., Tai, T.H., Dubcovsky, J. and Comai, L. (2011) Discovery of rare mutations in populations: TILLING by sequencing. Plant Physiol. 156, 12571268.
  • Uauy, C., Paraiso, F., Colasuonno, P., Tran, R., Tsai, H., Berardi, S., Comai, L. and Dubcovsky, J. (2009) A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat. BMC Plant Biol. 9, 115.
  • Vriet, C., Welham, T., Brachmann, A., Pike, M., Pike, J., Perry, J., Parniske, M., Sato, S., Tabata, S., Smith, A.M. and Wang, T.L. (2010) A suite of Lotus japonicus starch mutants reveals both conserved and novel features of starch metabolism. Plant Physiol. 154, 643655.
  • Wang, N., Shi, L., Tian, F., Ning, H., Wu, X., Long, Y. and Meng, J. (2010a) Assessment of FAE1 polymorphisms in three Brassica species using EcoTILLING and their association with differences in seed erucic acid contents. BMC Plant Biol. 10, 137.
  • Wang, T., Uauy, C., Till, B. and Liu, C.M. (2010b) TILLING and associated technologies. J. Integr. Plant Biol. 52, 10271030.
  • Weil, C.F. (2009) TILLING in grass species. Plant Physiol. 149, 158164.
  • Zhou, L., Vandersteen, J., Wang, L., Fuller, T., Taylor, M., Palais, B. and Wittwer, C.T. (2004) High-resolution DNA melting curve analysis to establish HLA genotypic identity. Tissue Antigens, 64, 156164.