Targeted re-sequencing of the allohexaploid wheat exome
Article first published online: 17 JUN 2012
© 2012 The Authors. Plant Biotechnology Journal © 2012 Society for Experimental Biology, Association of Applied Biologists and Blackwell Publishing Ltd
Plant Biotechnology Journal
Special Issue: Next Generation Sequencing Technologies
Volume 10, Issue 6, pages 733–742, August 2012
How to Cite
Winfield, M. O., Wilkinson, P. A., Allen, A. M., Barker, G. L. A., Coghill, J. A., Burridge, A., Hall, A., Brenchley, R. C., D’Amore, R., Hall, N., Bevan, M. W., Richmond, T., Gerhardt, D. J., Jeddeloh, J. A. and Edwards, K. J. (2012), Targeted re-sequencing of the allohexaploid wheat exome. Plant Biotechnology Journal, 10: 733–742. doi: 10.1111/j.1467-7652.2012.00713.x
- Issue published online: 5 JUL 2012
- Article first published online: 17 JUN 2012
- Received 2 March 2012; revised 25 April 2012; accepted 30 April 2012.
Figure S1 Fold coverage of the features on the NimbleGen array for the combined sequences of all eight wheat varieties.
Figure S2 The percentage of the four nucleotides A, C, G and T at the 511 439 putative single-nucleotide polymorphism loci for each of the eight wheat varieties studied.
Figure S3 The bars of the graphs represent the average scores for the 400 contigs contained in each of the three bins.
Table S1 All 59 000 contigs and the 511 439 putative single-nucleotide polymorphisms identified in the eight wheat varieties, Alchemy, Avalon, Cadenza, Hereward, Rialto, Robigus, Savannah and Xi19.
Table S2 The 96 varietal single-nucleotide polymorphisms validated against a panel of 23 wheat varieties.
Table S3 The total number of tri-homoeoallelic loci (row 1) and the number of contigs that contained loci with one (row 2) or more (rows 3 and 4) tri-homoeoallelics single-nucleotide polymorphisms.
Table S4 The loci that were tri-homoeoallelic for all eight varieties.
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