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  • Allen, A.M., Barker, G.L.A., Berry, S.T., Coghill, J.A., Gwilliam, R., Kirby, S., Robinson, P., Brenchley, R.C., D’Amore, R., McKenzie, N., Waite, D., Hall, A., Bevan, M., Hall, N. and Edwards, K.J. (2011) Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.). Plant Biotechnol. J. 9, 10861099.
  • Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403410.
  • Ansan-Melayah, D., Balesdent, M.H., Delourme, R., Pilet, M.L., Tanguy, X., Renard, M. and Rouxel, T. (1998) Genes for race-specific resistance against blackleg disease in Brassica napus L. Plant Breed. 117, 373378.
  • Balesdent, M.H., Attard, A., Ansan-Melayah, D., Delourme, R., Renard, M. and Rouxel, T. (2001) Genetic control and host range of avirulence toward Brassica napus cultivars Quinta and Jet Neuf in Leptosphaeria maculans. Phytopathology, 91, 7076.
  • Balesdent, M.H., Attard, A., Kühn, M.L. and Rouxel, T. (2002) New avirulence genes in the phytopathogenic fungus Leptosphaeria maculans. Am. Phytopath. Society, 92, 11221133.
  • Batley, J. and Edwards, D. (2009) Genome sequence data: management, storage and visualization. Biotechniques, 46, 333336.
  • Baumgarten, A., Cannon, S., Spangler, R. and May, G. (2003) Genome level evolution of resistance genes in Arabidopsis thaliana. Genetics, 165, 309319.
  • Boyle, J.S. and Lew, A.M. (1995) An inexpensive alternative to glassmilk for DNA purification. Trends Genet. 11, 8.
  • Delourme, R., Pilet-Nayel, M.L., Archipiano, M., Horvais, R., Tanguy, X., Rouxel, T., Brun, H., Renard, M. and Balesdent, M.H. (2004) A cluster of major specific resistance genes to Leptosphaeria maculans in Brassica napus. Phytopathology, 94, 578583.
  • Delourme, R., Chevre, A.M., Brun, H., Rouxel, T., Balesdent, M.H., Dias, J.S., Salisbury, P., Renard, M. and Rimmer, S.R. (2006) Major gene and polygenic resistance to Leptosphaeria maculans in oilseed rape (Brassica napus). Eur. J. Plant Pathol. 114, 4152.
  • Delourme, R., Piel, N., Horvais, R., Poully, N., Domin, C., Vallée, P., Falentin, C., Manzanares-Dauleux, M.J. and Renard, M. (2008) Molecular and phenotypic characterization of near isogenic lines at QTL for quantitative resistance to Leptosphaeria maculans in oilseed rape (Brassica napus L.). Theor. Appl. Genet. 117, 10551067.
  • Drummond, A.J., Ashton, B., Buxton, S., Cheung, M., Cooper, A., Duran, C., Field, M., Heled, J., Kearse, M., Markowitz, S., Moir, R., Stones-Havas, S., Sturrock, S., Thierer, T. and Wilson, A. (2012) Geneious Pro v5.6. Available from http://www.geneious.com (Last accessed 1 February 2012).
  • Duran, C., Appleby, N., Vardy, M., Imelfort, M., Edwards, D. and Batley, J. (2009a) Single nucleotide polymorphism discovery in barley using AutoSNPdb. Plant Biotechnol. J. 7, 326333.
  • Duran, C., Appleby, N., Edwards, D. and Batley, J. (2009b) Molecular genetic markers: discovery, applications, data storage and visualisation. Curr. Bioinform. 4, 1627.
  • Duran, C., Eales, D., Marshall, D., Imelfort, M., Stiller, J., Berkman, P., Clark, T., McKenzie, M., Appleby, N., Batley, J., Basford, K. and Edwards, D. (2010) Future tools for association mapping in crop plants. Genome, 53, 10171023.
  • Edwards, D. and Batley, J. (2010) Plant genome sequencing: applications for crop improvement. Plant Biotechnol. J. 8, 29.
  • Edwards, D. and Wang, X. (2012) Genome sequencing initiatives. In Genetics, Genomics and Breeding of Oilseed Brassicas (Edwards, D., Parkin, I.A.P. and Batley, J., eds), pp. 152157. USA: Science Publishers.
  • Ferreira, M.E., Rimmer, S.R., Williams, P.H. and Osborn, T.C. (1995) Mapping loci controlling Brassica napus resistance to Leptosphaeria maculans under different screening conditions. Am. Phytopath. Society, 85, 213217.
  • Fitt, B.D.L., Hu, B.C., Li, Z.Q., Liu, S.Y., Lange, R.M., Kharbanda, P.D., Butterworth, M.H. and White, R.P. (2008) Strategies to prevent spread of Leptosphaeria maculans (phoma stem canker) onto oilseed rape crops in China; costs and benefits. Plant. Pathol. 57, 652664.
  • Freidt, W. and Snowdon, R. (2009) Oilseed rape. In Oil Crops, Handbook of Plant Breeding 4 ( Vollmann, J. and Rajcan, I., eds), pp. 91126. New York: Springer Science+Business Media.
  • Hayward, A., McLanders, J., Campbell, E., Edwards, D. and Batley, J. (2012) Genomic advances will herald new insights into the Brassica: Leptosphaeria maculans pathosystem. Plant Biol. 14, 110.
  • Howlett, B.J. (2004) Current knowledge of the interaction between Brassica napus and Leptosphaeria maculans. Can. J. Plant Pathol. 26, 245252.
  • Howlett, B.J., Indurm, A. and Pedras, M.S.C. (2001) Leptosphaeria maculans, the causal agent of blackleg disease of Brassicas. Fungal Genet. Biol. 33, 114.
  • Imelfort, M. and Edwards, D. (2009) De novo sequencing of plant genomes using second-generation technologies. Brief. Bioinform. 10, 609618.
  • Imelfort, M., Duran, C., Batley, J. and Edwards, D. (2009) Discovering genetic polymorphisms in next generation sequencing data. Plant Biotechnol. J. 7, 312317.
  • Jullien, N. (2008) AmpliFx version 1.5.4 (software). Available at: http://ifrjr.nord.univ-mrs.fr/AmplifX-Home-page. Accessed June 2011.
  • Kaur, S., Cogan, N.O.I., Ye, G., Ballie, R.C., Hand, M.L., Ling, A.E., McGearey, A.K., Kaur, J., Hopkins, C.J., Todorovic, M., Mountford, H., Edwards, D., Batley, J., Burton, W., Salisbury, P., Gororo, N., Marcroft, S., Kearney, G., Smith, K.F., Forster, J.W. and Spangenberg, G.C. (2009) Genetic map construction and QTL mapping of resistance to blackleg (Leptosphaeria maculans) disease in Australian canola (Brassica napus L.) cultivars. Theor. Appl. Genet. 120, 7183.
  • Kharabian-Masouleh, A., Waters, D.L.E., Reinke, R.F. and Henry, R.J. (2011) Discovery of polymorphisms in starch-related genes in rice germplasm by amplification of pooled DNA and deeply parallel sequencing. Plant Biotechnol. J. 9, 10741085.
  • Korf, I. (2004) Gene finding in novel genomes. BMC Bioinform. 5, 59.
  • Li, R., Yu, C., Li, Y., Lam, T.-W., Yiu, S.-M., Kristiansen, K. and Wang, J. (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25, 19661967.
  • Lim, G.A.C., Jewell, E.G., Li, X., Erwin, T.A., Love, C., Batley, J., Spangenberg, G. and Edwards, D. (2007) A comparative map viewer Integrating Genetic Maps for Brassica and Arabidopsis. BMC Plant Biol. 7, 40.
  • Long, Y., Wang, W., Sun, Z., Fernando, D.W.G., McVetty, P.B.E. and Li, G. (2011) Identification of two blackleg resistance genes and fine mapping of one of these two genes in a Brassica napus canola cultivar ‘Surpass 400’. Theor. Appl. Genet. 122, 12231231.
  • Love, C., Logan, E., Erwin, T., Kaur, J., Lim, G.A.C., Hopkins, C., Batley, J., James, N., May, S., Spangenberg, G. and Edwards, D. (2006) Integrating and interrogating diverse Brassica data within an EnsEMBL structured database. Acta Hortic. 706, 7782.
  • Malory, S., Shapter, F.M., Elphinstone, M.S., Chivers, I.H. and Henry, R.J. (2011) Characterizing homologues of crop domestication genes in poorly described wild relatives by high-throughput sequencing of whole genomes. Plant Biotechnol. J. 9, 11311140.
  • Parlange, F., Daverdin, G., Fudal, I., Kühn, M.L., Balesdent, M.H., Blaise, F., Grezes-Besset, B. and Rouxel, T. (2009) Leptosphaeria maculans avirulence gene AvrLm4-7 confers a dual recognition specificity by the Rlm4 and Rlm7 resistance genes of oilseed rape, and circumvents Rlm4-mediated recognition through a single amino acid change. Mol. Microbiol. 71, 851863.
  • Persson, M., Staal, J., Oid, S. and Dixelius, C. (2009) Layers of defense responses to Leptosphaeria maculans below the Rlm1– and Camelexin – dependent resistances. New Phytol. 182, 470482.
  • Pilet, M.L., Duplan, G., Archipiano, M., Barret, P., Baron, C., Horvais, R., Tanguy, X., Lucas, M.O., Renard, M. and Delourme, R. (2001) Stability of QTL for field resistance to blackleg across two genetic backgrounds in oilseed rape. Crop Sci. 41, 197205.
  • Raman, R., Taylor, B., Marcroft, S., Stiller, J., Eckermann, P., Coombes, N., Rehman, A., Lindbeck, K., Luckett, D., Wratten, N., Batley, J., Edwards, D., Wang, X. and Raman, H. (2012) Molecular mapping of qualitative and quantitative loci for resistance to Leptosphaeria maculans; causing blackleg disease in canola (Brassica napus L.). Theor. Appl. Genet. doi: 10.1007/s00122-012-1842-6:1-14 (in press).
  • Rimmer, S.R. (2006) Resistance genes to Leptosphaeria maculans in Brassica napus. Can. J. Plant Pathol. 28, S288S297.
  • Sambrook, J. and Russell, D. (2001) Molecular Cloning: A Laboratory Manual, 3rd edn. New York: Cold Spring Harbour Laboratory Press.
  • Subbaiyan, G.K., Waters, D.L.E., Katiyar, S.K., Sadananda, A.R., Vaddadi, S. and Henry, R.J. (2012) Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing. Plant Biotechnol. J. doi: 10.1111/j.1467-7652.2011.00676.x (in press).
  • Varshney, R.K., Nayak, S.N., May, G.D. and Jackson, S.A. (2009) Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol. 27, 522530.
  • Wang, X., Wang, H., Wang, J., Sun, R., Wu, J., Liu, S., Bai, Y., Mun, J.-H., Bancroft, I., Cheng, F., Huang, S., Li, X., Hua, W., Wang, J., Wang, X., Freeling, M., Pires, J.C., Paterson, A.H., Chalhoub, B., Wang, B., Hayward, A., Sharpe, A.G., Park, B.-S., Weisshar, B., Liu, B., Li, B., Liu, B., Tong, C., Song, C., Duran, C., Peng, C., Geng, C., Koh, C., Lin, C., Edwards, D., Mu, D., Shen, D., Soumpourou, E., Li, F., Fraser, F., Conant, G., Lassalle, G., King, G.J., Bonnema, G., Tang, H., Wang, H., Belcram, H., Zhou, H., Hirakawa, H., Abe, H., Guo, H., Wang, H., Jin, H., Parkin, I.A.P., Batley, J., Kim, J.-S., Just, J., Li, J., Xu, J., Deng, J., Kim, J.A., Li, J., Yu, J., Meng, J., Wang, J., Min, J., Min, J., Poulain, J., Wang, J., Hatakeyama, K., Wu, K., Wang, L., Fang, L., Trick, M., Links, M.G., Zhao, M., Jin, M., Ramchiary, N., Drou, N., Berkman, P.J., Cai, Q., Huang, Q., Li, R., Tabata, S., Cheng, S., Zhang, S., Zhang, S., Huang, S., Sato, S., Sun, S., Kwon, S.-J., Choi, S.-R., Lee, T.-H., Fan, W., Zhao, X., Tan, X., Xu, X., Wang, Y., Qiu, Y., Yin, Y., Li, Y., Du, Y., Liao, Y., Lim, Y., Narusaka, Y., Wang, Y., Wang, Z., Li, Z., Wang, Z., Xiong, Z. and Zhang, Z. (2011) The genome of the mesopolyploid crop species Brassica rapa. Nat. Genet. 43, 10351039.