Figure S1 MapMan diagram illustrating differentially regulated functional categories.

Table S1 Expression of soybean genes (RNA-seq data) in roots inoculated with WT B.  japonicum and nodC B.  japonicum at 48 hpi.

Table S2 List of all up-regulated genes and their expression (RNA-seq data).

Table S3 List of all down-regulated genes and their expression (RNA-seq data).

Table S4 MapMan functional categories (BINs) with contents that are statistically different from other BINs.

Table S5 qRT-PCR primer sequences.

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