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References

  • Affymetrix (2004). Affymetrix Expression Analysis Technical Manual. Santa Clara, CA.
  • Allison, D.B., Cui, X., Page, G.P., & Sabripour, M. (2006). Microarray data analysis: from disarray to consolidation and consensus. Nature Reviews Genetics, 7, 5565.
  • Bertone, P., Stolc, V., Royce, T.E., Rozowsky, J.S., Urban, A.E., Zhu, X., Rinn, J.L., Tongprasit, W., Samanta, M., Weissman, S., Gerstein, M., & Snyder, M. (2004). Global identification of human transcribed sequences with genome tiling arrays. Science, 306, 22422246.
  • Bertone, P., Trifonov, V., Rozowsky, J.S., Schubert, F., Emanuelsson, O., Karro, J., Kao, M.Y., Snyder, M., & Gerstein, M. (2006). Design optimization methods for genomic DNA tiling arrays. Genome Research, 19, 271281.
  • Butcher, L.M., Meaburn, E., Knight, J., Sham, P., Schalkwyk, L.C., Craig, I.W., & Plomin, R. (2005). SNPs, microarrays, and pooled DNA: identification of four loci associated with mild mental impairment in a sample of 6000 children. Human Molecular Genetics, 14, 13151325.
  • Butcher, L.M., Meaburn, E., Liu, L., Hill, L., Al-Chalabi, A., Plomin, R., Schalkwyk, L., & Craig, I.W. (2004). Genotyping pooled DNA on microarrays: a systematic genome screen of thousands of SNPs in large samples to detect QTLs for complex traits. Behavior Genetics, 34, 549555.
  • Carlson, C.S., Eberle, M.A., Kruglyak, L., & Nickerson, D.A. (2004). Mapping complex disease loci in whole-genome association studies. Nature, 429, 446452.
  • Cawley, S., Bekiranov, S., Ng, H.H., Kapranov, P., Sekinger, E.A., Kampa, D., Piccolboni, A., Sementchenko, V., Cheng, J., Williams, A.J., Wheeler, R., Wong, B., Drenkow, J., Yamanaka, M., Patel, S., Brubaker, S., Tammana, H., Helt, G., Struhl, K., & Gingeras, T.R. (2004). Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell, 116, 499509.
  • Cobb, J.P., Mindrinos, M.N., Miller-Graziano, C., Calvano, S.E., Baker, H.V., Xiao, W., Laudanski, K., Brownstein, B.H., Elson, C.M., Hayden, D.L., Herndon, D.N., Lowry, S.F., Maier, R.V., Schoenfeld, D.A., Moldawer, L.L., Davis, R.W., Tompkins, R.G., Baker, H.V., Bankey, P., Billiar, T., Brownstein, B.H., Calvano, S.E., Camp, D., Chaudry, I., Cobb, J.P., Davis, R.W., Elson, C.M., Freeman, B., Gamelli, R., Gibran, N., Harbrecht, B., Hayden, D.L., Heagy, W., Heimbach, D., Herndon, D.N., Horton, J., Hunt, J., Laudanski, K., Lederer, J., Lowry, S.F., Maier, R.V., Mannick, J., McKinley, B., Miller-Graziano, C., Mindrinos, M.N., Minei, J., Moldawer, L.L., Moore, E., Moore, F., Munford, R. et al. (2005). Application of genome-wide expression analysis to human health and disease. Proceedings of the National Academy of Sciences USA, 102, 48014806.
  • Costa, F.F. (2005). Non-coding RNAs: new players in eukaryotic biology. Gene, 357, 8394.
  • Feezor, R.J., Baker, H.V., Mindrinos, M., Hayden, D., Tannahill, C.L., Brownstein, B.H., Fay, A., MacMillan, S., Laramie, J., Xiao, W., Moldawer, L.L., Cobb, J.P., Laudanski, K., Miller-Graziano, C.L., Maier, R.V., Schoenfeld, D., Davis, R.W., & Tompkins, R.G. (2004). Whole blood and leukocyte RNA isolation for gene expression analyses. Physiological Genomics, 19, 247254.
  • Freimer, N.B., & Sabatti, C. (2005). Guidelines for association studies in Human Molecular Genetics. Human Molecular Genetics, 14, 24812483.
  • Gladkevich, A., Kauffman, H.F., & Korf, J. (2004). Lymphocytes as a neural probe: potential for studying psychiatric disorders. Progress in Neuro-Psychopharmacology and Biological Psychiatry, 28, 559576.
  • Grant, S.G.N. (2003). An integrative neuroscience program linking genes to cognition and disease. In R.Plomin, J.C.DeFries, I.W.Craig, & P.McGuffin (Eds.), Behavioral genetics in the postgenomic era (pp. 123138). Washington, DC: American Psychological Association.
  • Hirschhorn, J.N., & Daly, M.J. (2005). Genome-wide association studies for common diseases and complex traits. Nature Reviews Genetics, 6, 108.
  • Hoheisel, J.D. (2006). Microarray technology: beyond transcript profiling and genotype analysis. Nature Review Genetics, 7, 200210.
  • Konradi, C. (2005). Gene expression microarray studies in polygenic psychiatric disorders: applications and data analysis. Brain Research Reviews, 50, 142155.
  • Mattick, J.S. (2004). RNA regulation: a new genetics? Nature Reviews Genetics, 5, 316323.
  • Meaburn, E., Butcher, L.M., Liu, L., Fernandes, C., Hansen, V., Al-Chalabi, A., Plomin, R., Craig, I., & Schalkwyk, L.C. (2005). Genotyping DNA pools on microarrays: tackling the QTL problem of large samples and large numbers of SNPs. BMC Genomics, 6, 5260.
  • Meaburn, E., Butcher, L.M., Schalkwyk, L.C., & Plomin, R. (2006). Genotyping pooled DNA using 100K SNP microarrays: a step towards genomewide association scans. Nucleic Acids Research, 34, e27.
  • Miklos, G.L., & Maleszka, R. (2004). Microarray reality checks in the context of a complex disease. Nature Biotechnology, 22, 615621.
  • Nicholson, A.C., Unger, E.R., Mangalathu, R., Ojaniemi, H., & Vernon, S.D. (2004). Exploration of neuroendocrine and immune gene expression in peripheral blood mononuclear cells. Molecular Brain Research, 129, 193197.
  • OMIM Online Medelian Inheritance in Man (OMIM) (2004). http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM&itool=toolbar .
  • Pahl, A. (2005). Gene expression profiling using RNA extracted from whole blood: technologies and clinical applications. Expert Review of Molecular Diagnostics, 5, 4352.
  • Pang, K.C., Frith, M.C., & Mattick, J.S. (2006). Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function. Trends in Genetics, 22, 15.
  • Plomin, R., DeFries, J.C., Craig, I.W., & McGuffin, P. (2003). Behavioral genetics in the postgenomic era. Washington, DC: American Psychological Association.
  • Thomas, D.C., Haile, R.W., & Duggan, D. (2005). Recent developments in genomewide association scans: a workshop summary and review. American Journal of Human Genetics, 77, 337345.
  • Wang, W.Y., Barratt, B.J., Clayton, D.G., & Todd, J.A. (2005). Genome-wide association studies: theoretical and practical concerns. Nature Reviews Genetics, 6, 109118.
  • Washietl, S., Hofacker, I.L., Lukasser, M., Huttenhofer, A., & Stadler, P.F. (2005). Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. Nature Biotechnology, 23, 13831390.
  • Yamasaki, C., Koyanagi, K.O., Fujii, Y., Itoh, T., Barrero, R., Tamura, T., Yamaguchi-Kabata, Y., Tanino, M., Takeda, J., Fukuchi, S., Miyazaki, S., Nomura, N., Sugano, S., Imanishi, T., & Gojobori, T. (2005). Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-InvDB). Gene, 364, 99107.
  • Yuferov, V., Nielsen, D., Butelman, E., & Kreek, M.J. (2005). Microarray studies of psychostimulant-induced changes in gene expression. Addiction Biology, 10, 101118.