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Table S1 Methods used in Y-SNP typing.

Table S2 Haplogroup distribution in Iberian populations. H: Haplogroup Diversity Index, MPD: Mean Pairwise Differences for each haplogroup pair, N: Sample size. JAC: Jacetania, ARA: Valle de Arán, CIN: Cinco Villas, URG: Alto Urgel, CER: Cerdaña, VIZ: Biscay (Alonso et al. 2005), GUI: Guipuzcoa (Alonso et al. 2005), OBA: Other Basques (Alonso et al. 2005), SEV: Sevilla (Flores et al. 2004), HUE: Huelva (Flores et al. 2004), CAD: Cadiz (Flores et al. 2004), COR: Cordoba (Flores et al. 2004), MAL: Malaga (Flores et al. 2004), LEO: Leon (Flores et al. 2004), VAL: Valencia (Flores et al. 2004), CAS: Castilla (Flores et al. 2004), PAS: Valle del Pas (Cantabria) (Maca-Meyer et al. 2003), LEB: Liébana (Cantabria) (Maca-Meyer et al. 2003), OCA: Other Cantabrians (Maca-Meyer et al. 2003), GAL: Galicia (Brión et al. 2004) and POR: Portugal (Beleza et al. 2006).

Table S3 STR haplotypes' data within each haplogroup. Y-STR order in haplotypes: DYS19, DYS389I, DYS389II-I, DYS390, DYS391, DYS392, DYS393, DYS385, DYS437, DYS438, DYS439, GATA H4. The Code identify the region by the first letter in which J = Jacetania, A = Valle de Arán, L = Cinco Villas, C = Cerdaña and U = Alto Urgel.

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