SEARCH

SEARCH BY CITATION

References

  • Agresti, A. (2002) Categorical data analysis. Hoboken , New Jersey : Wiley.
  • Altshuler, D., Daly, M. J. & Lander, E. S. (2008) Genetic mapping in human disease. Science 322, 881888.
  • Brassat, D., Motsinger, A. A., Caillier, S. J., Erlich, H. A., Walker, K., Steiner, L. L., Cree, B. A., Barcellos, L. F., Pericak-Vance, M. A., Schmidt, S., Gregory, S., Hauser, S. L., Haines, J. L., Oksenberg, J. R. & Ritchie, M. D. (2006) Multifactor dimensionality reduction reveals gene-gene interactions associated with multiple sclerosis susceptibility in African Americans. Genes Immun 7, 310315.
  • Bush, W. S., Edwards, T. L., Dudek, S. M., Mckinney, B. A. & Ritchie, M. D. (2008) Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction. Bmc Bioinformatics 9, 238.
  • Dudek, S. M., Motsinger, A. A., Velez, D. R., Williams, S. M. & Ritchie, M. D. (2006) Data simulation software for whole-genome association and other studies in human genetics. Pac Symp Biocomput 1, 499510.
  • Edwards, T. L., Wang, X., Chen, Q., Wormly, B., Riley, B., O’neill, F. A., Walsh, D., Ritchie, M. D., Kendler, K. S. & Chen, X. (2008) Interaction between interleukin 3 and dystrobrevin-binding protein 1 in schizophrenia. Schizophr Res 106, 208217.
  • Frankel, W. N. & Schork, N. J. (1996) Who's afraid of epistasis Nat Genet 14, 371373.
  • Geman, S., Bienenstock, E. & Doursat, R. (1992) Neural networks and the bias variance dilemma. Neural Computation 4, 158.
  • Haas, D. W., Geraghty, D. E., Andersen, J., Mar, J., Motsinger, A. A., D’aquila, R. T., Unutmaz, D., Benson, C. A., Ritchie, M. D. & Landay, A. (2006) Immunogenetics of CD4 lymphocyte count recovery during antiretroviral therapy: An AIDS Clinical Trials Group study. J Infect Dis 194, 10981107.
  • Hahn, L. W. & Moore, J. H. (2004) Ideal discrimination of discrete clinical endpoints using multilocus genotypes. In Silico Biology 4, 183194.
  • Hahn, L. W., Ritchie, M. D. & Moore, J. H. (2001) Power of multifactor dimensionality reduction (MDR) for identifying gene-gene and gene-environment interactions. Am J Hum Genet 69, 1174.
  • Hastie, T. J., Tibshirani, R. J. & Friedman, J. H. (2001) The elements of statistical learning. Basel : Springer Verlag.
  • Hirschhorn, J. N., Lohmueller, K., Byrne, E. & Hirschhorn, K. (2002) A comprehensive review of genetic association studies. Genetics in Medicine 4, 4561.
  • Kagan, A. (2001) A note on the logistic link function. Biometrika 88, 599601.
  • Li, W. & Reich, J. (2000) A complete enumeration and classification of two-locus disease models. Hum Hered 50, 334349.
  • Lohmueller, K. E., Pearce, C. L., Pike, M., Lander, E. S. & Hirschhorn, J. N. (2003) Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease. Nature Genet 33, 177182.
  • Moore, J. H. (2003) The ubiquitous nature of epistasis in determining susceptibility to common human diseases. Hum Hered 56, 7382.
  • Moore, J. H. (2005) A global view of epistasis. Nat Genet 37, 134.
  • Moore, J. H., Gilbert, J. C., Tsai, C. T., Chiang, F. T., Holden, T., Barney, N. & White, B. C. (2006) A flexible computational framework for detecting, characterizing, and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility. J Theor Biol 241, 252261.
  • Motsinger-Reif, A. A., Reif, D. M., Fanelli, T. J. & Ritchie, M. D. (2008) A comparison of analytical methods for genetic association studies. Genet Epidemiol 32, 767778.
  • Motsinger, A. A., Brassat, D., Caillier, S. J., Erlich, H. A., Walker, K., Steiner, L. L., Barcellos, L. F., Pericak-Vance, M. A., Schmidt, S., Gregory, S., Hauser, S. L., Haines, J. L., Oksenberg, J. R. & Ritchie, M. D. (2007) Complex gene-gene interactions in multiple sclerosis: a multifactorial approach reveals associations with inflammatory genes. Neurogenetics 8, 1120.
  • Motsinger, A. A. & Ritchie, M. D. (2006) The effect of reduction in cross-validation intervals on the performance of multifactor dimensionality reduction. Genet Epidemiol 30, 546555.
  • Motsinger, A. A., Ritchie, M. D., Shafer, R. W., Robbins, G. K., Morse, G. D., Labbe, L., Wilkinson, G. R., Clifford, D. B., D’aquila, R. T., Johnson, V. A., Pollard, R. B., Merigan, T. C., Hirsch, M. S., Donahue, J. P., Kim, R. B. & Haas, D. W. (2006) Multilocus genetic interactions and response to efavirenz-containing regimens: an adult AIDS clinical trials group study. Pharmacogenet Genomics 16, 837845.
  • Mukherjee, B. & Liu, I. (2009) A note on bias due to fitting prospective multivariate generalized linear models to categorical outcomes ignoring retrospective sampling schemes. Journal of Multivariate Analysis 100, 459472.
  • Namkung, J., Kim, K., Yi, S., Chung, W., Kwon, M. S. & Park, T. (2009) New evaluation measures for multifactor dimensionality reduction classifiers in gene-gene interaction analysis. Bioinformatics 25, 338345.
  • Neuhaus, J. M. (2002) Bias due to ignoring the sample design in case-control studies. Australian & New Zealand Journal of Statistics 44, 285293.
  • Neuman, R. J. & Rice, J. P. (1992) Two-locus models of disease. Genet Epidemiol 9, 347365.
  • Nordgard, S. H., Ritchie, M. D., Jensrud, S. D., Motsinger, A. A., Alnaes, G. I., Lemmon, G., Berg, M., Geisler, S., Moore, J. H., Lonning, P. E., Borresen-Dale, A. L. & Kristensen, V. N. (2007) ABCB1 and GST polymorphisms associated with TP53 status in breast cancer. Pharmacogenet Genomics 17, 127136.
  • Pregibon, D. (1997) Data mining. Stat Computing and Graphics 7, 8.
  • Prentice, R. L. & Pyke, R. (1979) Logistic disease incidence models and case-control studies. Biometrika 66, 403411.
  • R Development Core Team (2005) R: A language and environment for statistical computing. Vienna , Austria : R Foundation for Statistical Computing. ISBN 3-900051-07-0, URL http://www.R-project.org.
  • Ritchie, M. D., Hahn, L. W. & Moore, J. H. (2003) Power of multifactor dimensionality reduction for detecting gene-gene interactions in the presence of genotyping error, missing data, phenocopy, and genetic heterogeneity. Genet Epidemiol 24, 150157.
  • Ritchie, M. D., Hahn, L. W., Roodi, N., Bailey, L. R., Dupont, W. D., Parl, F. F. & Moore, J. H. (2001) Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am J Hum Genet 69, 138147.
  • Sas Institute Inc. (2004) Cary , NC .
  • Schlesselman, J. J. (1982) Case control studies: design, conduct, analysis. New York : Oxford University Press.
  • Velez, D. R., White, B. C., Motsinger, A. A., Bush, W. S., Ritchie, M. D., Williams, S. M. & Moore, J. H. (2007) A balanced accuracy function for epistasis modeling in imbalanced datasets using multifactor dimensionality reduction. Genet Epidemiol 31, 306315.