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Phylogeography of the Y-chromosome haplogroup C in northern Eurasia

  1. Boris Malyarchuk1,*,
  2. Miroslava Derenko1,
  3. Galina Denisova1,
  4. Marcin Wozniak2,
  5. Tomasz Grzybowski2,
  6. Irina Dambueva3,
  7. Ilia Zakharov4

Article first published online: 20 AUG 2010

DOI: 10.1111/j.1469-1809.2010.00601.x

Issue

Annals of Human Genetics

Annals of Human Genetics

Volume 74, Issue 6, pages 539–546, November 2010

Additional Information

How to Cite

Malyarchuk, B., Derenko, M., Denisova, G., Wozniak, M., Grzybowski, T., Dambueva, I. and Zakharov, I. (2010), Phylogeography of the Y-chromosome haplogroup C in northern Eurasia. Annals of Human Genetics, 74: 539–546. doi: 10.1111/j.1469-1809.2010.00601.x

Author Information

  1. 1

    Institute of Biological Problems of the North, Russian Academy of Sciences, Portovaya str. 18, 685000 Magadan, Russia

  2. 2

    Forensic Medicine Institute, the Ludwik Rydygier Medical College, the Nicolaus Copernicus University in Torun, 85-094 Bydgoszcz, Poland

  3. 3

    Institute of General and Experimental Biology, Russian Academy of Sciences, 670047 Ulan-Ude, Russia

  4. 4

    N.I. Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Str. 3, 119991 Moscow, Russia

* Corresponding author: Dr. Boris A. Malyarchuk, Genetics Laboratory, Institute of Biological Problems of the North, Portovaya str., 18, 685000 Magadan, Russia. Fax/Phone: +7 4132 634463; E-mail: malyarchuk@ibpn.ru

Publication History

  1. Issue published online: 14 OCT 2010
  2. Article first published online: 20 AUG 2010
  3. Received: 15 March 2010Accepted: 9 June 2010

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References

  • Balaresque, P., Parkin, E. J., Roewer, L., Carvalho-Silva, D. R., Mitchell, R. J., Van Oorschot, R. A., Henke, J., Stoneking, M., Nasidze, I., Wetton, J., De Knijff, P., Tyler-Smith, C. & Jobling, M. A. (2009) Genomic complexity of the Y-STR DYS19: inversions, deletions and founder lineages carrying duplications. Int. J. Legal Med. 123, 15–23.
  • Bandelt, H.-J., Macaulay, V. & Richards, M. (2000) Median networks: speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA. Mol. Phylogenet. Evol. 16, 8–28.
  • Bergen, A. W., Wang, C. Y., Tsai, J., Jefferson, K., Dey, C., Smith, K. D., Park, S. C., Tsai, S. J. & Goldman, D. (1999) An Asian-Native American paternal lineage identified by RPS4Y resequencing and by microsatellite haplotyping. Ann. Hum. Genet. 63, 63–80.
    Direct Link:
  • Derenko, M. V., Grzybowski, T., Malyarchuk, B. A., Dambueva, I. K., Denisova, G. A., Czarny, J., Dorzhu, C. M., Kakpakov, V. T., Miścicka-Sliwka, D., Woźniak, M. & Zakharov, I. A. (2003) Diversity of mitochondrial DNA lineages in South Siberia. Ann. Hum. Genet. 67, 391–411.
    Direct Link:
  • Derenko, M., Malyarchuk, B., Denisova, G., Wozniak, M., Dambueva, I., Dorzhu, C., Luzina, F., Miscicka-Sliwka, D. & Zakharov, I. (2006) Contrasting patterns of Y-chromosome variation in South Siberian populations from Baikal and Altay-Sayan regions. Hum. Genet. 118, 591–604.
  • Derenko, M., Malyarchuk, B., Denisova, G., Wozniak, M., Grzybowski, T., Dambueva, I. & Zakharov, I. (2007a) Y-chromosome haplogroup N dispersals from south Siberia to Europe. J. Hum. Genet. 52, 763–770.
  • Derenko, M. V., Malyarchuk, B. A., Wozniak, M., Denisova, G. A., Dambueva, I. K., Dorzhu, C. M., Grzybowski, T. & Zakharov, I. A. (2007b) Distribution of the male lineages of Genghis Khan's descendants in northern Eurasian populations. Russ. J. Genet. 43, 422–426.
  • Excoffier, L., Laval, G. & Schneider, S. (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol. Bioinform. Online 1, 47–50.
  • Goedbloed, M., Vermeulen, M., Fang, R. N., Lembring, M., Wollstein, A., Ballantyne, K., Lao, O., Brauer, S., Krüger, C., Roewer, L., Lessig, R., Ploski, R., Dobosz, T., Henke, L., Henke, J., Furtado, M. R. & Kayser, M. (2009) Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpFlSTR Yfiler PCR amplification kit. Int. J. Legal Med. 123, 471–482.
  • Hammer, M. F., Karafet, T. M., Park, H., Omoto, K., Harihara, S., Stoneking, M. & Horai, S. (2006) Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. J. Hum. Genet. 51, 47–58.
  • Karafet, T. M., Mendez, F. L., Meilerman, M. B., Underhill, P. A., Zegura, S. L. & Hammer, M. F. (2008) New binary polymorphisms reshape and increase resolution of the human Y-chromosomal haplogroup tree. Genome Res. 18, 830–838.
  • Karafet, T. M., Osipova, L. P., Gubina, M. A., Posukh, O. L., Zegura, S. L. & Hammer, M. F. (2002) High levels of Y-chromosome differentiation among native Siberian populations and the genetic signature of a boreal hunter-gatherer way of life. Hum. Biol. 74, 761–789.
  • Katoh, T., Munkhbat, B., Tounai, K., Mano, S., Ando, H., Oyungerel, G., Chae, G. T., Han, H., Jia, G. J., Tokunaga, K., Munkhtuvshin, N., Tamiya, G. & Inoko, H. (2005) Genetic feature of Mongolian ethnic groups revealed by Y-chromosomal analysis. Gene 346, 63–70.
  • Kayser, M., Brauer, S., Cordaux, R., Casto, A., Lao, O., Zhivotovsky, L. A., Moyse-Faurie, C., Rutledge, R. B., Schiefenhoevel, W., Gil, D., Lin, A. A., Underhill, P. A., Oefner, P. J., Trent, R. J. & Stoneking, M. (2006) Melanesian and Asian origins of Polynesians: mtDNA and Y chromosome gradients across the Pacific. Mol. Biol. Evol. 23, 2234–2244.
  • Kayser, M., Brauer, S., Weiss, G., Schiefenhövel, W., Underhill, P., Shen, P., Oefner, P., Tommaseo-Ponzetta, M. & Stoneking, M. (2003) Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea. Am. J. Hum. Genet. 72, 281–302.
  • Khar’kov, V. N., Stepanov, V. A., Medvedev, O. F., Spiridonova, M. G., Maksimova, N. R., Nogovitsyna, A. N. & Puzyrev, V. P. (2008) The origin of Yakuts: analysis of Y-chromosome haplotypes. Mol. Biol. (Mosk). 42, 226–237.
  • Kittler, R., Erler, A., Brauer, S., Stoneking, M. & Kayser, M. (2003) Apparent intrachromosomal exchange on the human Y chromosome explained by population history. Eur. J. Hum. Genet. 11, 304–314.
  • Lell, J. T., Sukernik, R. I., Starikovskaya, Y. B., Su, B., Jin, L., Schurr, T. G., Underhill, P. A. & Wallace, D. C. (2002) The dual origin and Siberian affinities of Native American Y chromosomes. Am. J. Hum. Genet. 70, 192–206.
  • Nasidze, I., Quinque, D., Dupanloup, I., Cordaux, R., Kokshunova, L. & Stoneking, M. (2005) Genetic evidence for the Mongolian ancestry of Kalmyks. Am. J. Phys. Anthropol. 128, 846–854.
    Direct Link:
  • Niederstätter, H., Berger, B., Oberacher, H., Brandstätter, A., Huber, C. G. & Parson W. (2004) Separate analysis of DYS385a and b versus conventional DYS385 typing: is there forensic relevance? Int. J. Legal Med. 119, 1–9.
  • Pakendorf, B., Novgorodov, I. N., Osakovskij, V. L. & Stoneking, M. (2007) Mating patterns amongst Siberian reindeer herders: inferences from mtDNA and Y-chromosomal analyses. Am. J. Phys. Anthropol. 133, 1013–1027.
    Direct Link:
  • Renfrew, C. (1994) World linguistic diversity. Sci. Am. 270, 104–110.
  • Roewer, L., Krüger, C., Willuweit, S., Nagy, M., Rodig, H., Kokshunova, L., Rothämel, T., Kravchenko, S., Jobling, M. A., Stoneking, M. & Nasidze, I. (2007) Y-chromosomal STR haplotypes in Kalmyk population samples. Forensic Sci. Int. 173, 204–209.
  • Rootsi, S., Zhivotovsky, L. A., Baldovic, M., Kayser, M., Kutuev, I. A., Khusainova, R., Bermisheva, M. A., Gubina, M., Fedorova, S. A., Ilumae, A. M., Khusnutdinova, E. K., Voevoda, M. I., Osipova, L. P., Stoneking, M., Lin, A. A., Ferak, V., Parik, J., Kivisild, T., Underhill, P. A. & Villems, R. (2007) A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe. Eur. J. Hum. Genet. 15, 204–211.
  • Sengupta, S., Zhivotovsky, L. A., King, R., Mehdi, S. Q., Edmonds, C. A., Chow, C. E., Lin, A. A., Mitra, M., Sil, S. K., Ramesh, A., Usha Rani, M. V., Thakur, C. M., Cavalli-Sforza, L. L., Majumder, P. P. & Underhill, P. A. (2006) Polarity and temporality of high-resolution Y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of central Asian pastoralists. Am. J. Hum. Genet. 78, 202–221.
  • Shen, P., Wang, F., Underhill, P. A., Franco, C., Yang, W. H., Roxas, A., Sung, R., Lin, A. A., Hyman, R. W., Vollrath, D., Davis, R. W., Cavalli-Sforza, L. L. & Oefner, P. J. (2000) Population genetic implications from sequence variation in four Y chromosome genes. Proc. Natl. Acad. Sci. USA 97, 7354–7359.
  • Stoneking, M. & Delfin, F. (2010) The human genetic history of East Asia: weaving a complex tapestry. Curr. Biol. 20, R188–193.
  • Tugolukov, V. A. (1980) Tungus ethnic roots. In: Ethnogenesis of peoples of the North (ed. I. S.Gurvich), pp. 152–176. Moscow : Nauka (in Russian).
  • Underhill, P. A., Jin, L., Lin, A. A., Mehdi, S. Q., Jenkins, T., Vollrath, D., Davis, R. W., Cavalli-Sforza, L. L. & Oefner, P. J. (1997) Detection of numerous Y chromosome biallelic polymorphisms by denaturing high-performance liquid chromatography. Genome Res. 7, 996–1005.
  • Underhill, P. A., Passarino, G., Lin, A. A., Shen, P., Mirazon Lahr, M., Foley, R. A., Oefner, P. J. & Cavalli-Sforza, L. L. (2001) The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations. Ann. Hum. Genet. 65, 43–62.
    Direct Link:
  • Vasilevich, G. M. (1969) The Evenks. Historico-ethnographical studies (XVIII-beginning of XX centuries). Leningrad : Nauka (in Russian).
  • Wells, R. S., Yuldasheva, N., Ruzibakiev, R., Underhill, P. A., Evseeva, I., Blue-Smith, J., Jin, L., Su, B., Pitchappan, R., Shanmugalakshmi, S., Balakrishnan, K., Read, M., Pearson, N. M., Zerjal, T., Webster, M. T., Zholoshvili, I., Jamarjashvili, E., Gambarov, S., Nikbin, B., Dostiev, A., Aknazarov, O., Zalloua, P., Tsoy, I., Kitaev, M., Mirrakhimov, M., Chariev, A. & Bodmer, W. F. (2001) The Eurasian heartland: a continental perspective on Y-chromosome diversity. Proc. Natl. Acad. Sci. USA 98, 10244–10249.
  • Xue, Y., Zerjal, T., Bao, W., Zhu, S., Lim, S. K., Shu, Q., Xu, J., Du, R., Fu, S., Li, P., et al. (2005) Recent spread of a Y-chromosomal lineage in northern China and Mongolia. Am. J. Hum. Genet. 77, 1112–1116.
  • Xue, Y., Zerjal, T., Bao, W., Zhu, S., Shu, Q., Xu, J., Du, R., Fu, S., Li, P., Hurles, M. E., Yang, H. & Tyler-Smith, C. (2006) Male demography in East Asia: a north-south contrast in human population expansion times. Genetics 172, 2431–2439.
  • Zaykin, D. V. & Pudovkin, A. J. (1993) Two programs to estimate significance of Chi-square values using pseudo-probability test. J. Heredity 84, 152.
  • Zegura, S. L., Karafet, T. M., Zhivotovsky, L. A. & Hammer, M. F. (2004) High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas. Mol. Biol. Evol. 21, 164–175.
  • Zerjal, T., Wells, R. S., Yuldasheva, N., Ruzibakiev, R. & Tyler-Smith, C. (2002) A genetic landscape reshaped by recent events: Y-chromosomal insights into central Asia. Am. J. Hum. Genet. 71, 466–482.
  • Zerjal, T., Xue, Y., Bertorelle, G., Wells, R. S., Bao, W., Zhu, S., Qamar, R., Ayub, Q., Mohyuddin, A., Fu, S., Li, P., Yuldasheva, N., Ruzibakiev, R., Xu, J., Shu, Q., Du, R., Yang, H., Hurles, M. E., Robinson, E., Gerelsaikhan, T., Dashnyam, B., Mehdi, S. Q. & Tyler-Smith, C. (2003) The genetic legacy of the Mongols. Am. J. Hum. Genet. 72, 717–721.
  • Zhivotovsky, L. A. (2001) Estimating divergence time with the use of microsatellite genetic distances: impacts of population growth and gene flow. Mol. Biol. Evol. 18, 700–709.
  • Zhivotovsky, L. A., Underhill, P. A., Cinnioglu, C., Kayser, M., Morar, B., Kivisild, T., Scozzari, R., Cruciani, F., Destro-Bisol, G., Spedini, G., Chambers, G. K., Herrera, R. J., Yong, K. K., Gresham, D., Tournev, I., Feldman, M. W. & Kalaydjieva, L. (2004) The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time. Am. J. Hum. Genet. 74, 50–61.
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