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References

  • Ayers K. A. & Cordell H. J. (2010) SNP selection in genome-wide and candidate gene studies via penalized logistic regression. Genet Epidemiol 34, 879891.
  • Barrett J. C., Fry B., Maller J., Daly M. J. (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21, 263265.
  • Devlin B. & Roeder K. (1999) Genomic control for association studies. Biometrics 55, 9971004.
  • de Vries R. R., Huizinga T. W., Toes R. E. (2005) Redefining the HLA and RA association: to be or not to be anti-CCP positive. J Autoimmun 25, 2125.
  • Ding B., Padyukov L., Lundstrom E., Seielstad M., Plenge R. M., Oksenberg J. R., Gregersen P.K., Alfredsson L., Klareskog L. (2009) Different patterns of associations with anti-citrullinated protein antibody-positive and anti-citrullinated protein antibody-negative rheumatoid arthritis in the extended major histocompatibility complex region. Arthritis Rheum 60, 3038.
  • Firestein G. S. (2003) Evolving concepts of rheumatoid arthritis. Nature 423, 356361.
  • Genkin, A., Lewis, D. D., Madigan, D. (2007) Large-scale Bayesian logistic regression for text categorisation. Technometrics 49, 291304.
  • Gregersen P. K., Silver J., Winchester R. J. (1987) The shared epitope hypothesis. An approach to understanding the molecular genetics of susceptibility to rheumatoid arthritis. Arthritis Rheum 30, 12051213.
  • Hoggart C. J., Whittaker J. C., De Iorio M.,& Balding D. J. (2008) Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies. PLoS Genet 4, e1000130.
  • Horton R., Wilming L., Rand V., Lovering R. C., Bruford E. A., Khodiyar V. K., Lush M. J., Povey S., Talbot C. C. Jr., Wright M. W., Wain H. M., Trowsdale J., Ziegler A., Beck S. (2004) Gene map of the extended human MHC. Nat Rev Genet 5, 889899.
  • Jawaheer D., Li W., Graham R. R., Chen W., Damle A., Xiao X., Monteiro J., Khalili H., Lee A., Lundsten R., Begovich A., Bugawan T., Erlich H., Elder J. T., Criswell L. A., Seldin M. F., Amos C.I., Behrens T.W., Gregersen P.K. (2002) Dissecting the genetic complexity of the association between human leukocyte antigens and rheumatoid arthritis. Am J Hum Genet 71, 585594.
  • Kilding R., Iles M. M., Timms J. M., Worthington J., Wilson A. G. (2004) Additional genetic susceptibility for rheumatoid arthritis telomeric of the DRB1 locus. Arthritis Rheum 50, 763769.
  • Lee H. S., Lee A. T., Criswell L. A., Seldin M. F., Amos C. I., Carulli J.P., Navarrete C., Remmers E. F., Kastner D. L., Plenge R. M., Li W., Gregersen P. K. (2008) Several regions in the major histocompatibility complex confer risk for anti-CCP-antibody positive rheumatoid arthritis, independent of the DRB1 locus. Mol Med 14, 293300.
  • Leslie S., Donnelly P. McVean G. (2008) A statistical method for predicting classical HLA alleles from SNP data. Am J Hum Genet 82, 4856.
  • Li Y., Willer C. J., Ding J., Scheet P., Abecasis G. R. (2006) MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet Epidemiol 34, 816834.
  • Li Y., Willer C. J., Sanna S., Abecasis G. R. (2009)Genotype Imputation. Annu Rev Genomics Hum Genet 10, 387406.
  • Martinez A., Fernandez-Arquero M., Balsa A., Rubio A., Alves H., Pascual-Salcedo D., Martin-Mola E., de la Concha E.G. (2001) Primary association of a MICA allele with protection against rheumatoid arthritis. Arthritis Rheum 44, 12611265.
  • McCarthy M. I., Abecasis G. R., Cardon L. R., Goldstein D. B., Little J., Ioannidis J. P., Hirschhorn J.N. (2008) Genome-wide association studies for complex traits: consensus, uncertainty and challenges. Nat Rev Genet 9, 356369.
  • Meyer M., Gaudieri S., Rhodes D.A., Trowsdale J. (2003) Cluster of TRIM genes in the human MHC class I region sharing the B30. 2 domain. Tissue Antigens 61, 6371.
  • Newton J., Brown M. A., Milicic A., Ackerman H., Darke C., Wilson J. N., Wordsworth B. P., Kwiatkowski D. (2003) The effect of HLA-DR on susceptibility to rheumatoid arthritis is influenced by the associated lymphotoxin alpha-tumor necrosis factor haplotype. Arthritis Rheum 48, 9096.
  • Nothnagel M., Ellinghaus D., Schreiber S., Krawczak M., Franke A. (2009) A comprehensive evaluation of SNP genotype imputation. Hum Genet 125, 163171.
  • Oliver J. E. & Silman A. J. (2006) Risk factors for the development of rheumatoid arthritis. Scand J Rheumatol 35, 169174.
  • Ota M., Katsuyama Y., Kimura A., Tsuchiya K., Kondo M., Naruse T., Mizuki N., Itoh K., Sasazuki T., Inoko H. (2001) A second susceptibility gene for developing rheumatoid arthritis in the human MHC is localized within a 70-kb interval telomeric of the TNF genes in the HLA class III region. Genomics 71, 263270.
  • Plenge R.M., Seielstad M., Padyukov L., Lee A. T., Remmers E. F., Ding B., Liew A., Khalili H., Chandrasekaran A., Davies L. R., Li W., Tan A. K., Bonnard C., Ong R. T., Thalamuthu A., Pettersson S., Liu C., Tian C., Chen W. V., Carulli J. P., Beckman E.M., Altshuler D., Alfredsson L., Criswell L. A., Amos C. I., Seldin M. F., Kastner D. L., Klareskog L., Gregersen P. K. (2007) TRAF1-C5 as a risk locus for rheumatoid arthritis – a genomewide study. N Engl J Med 357, 11991209.
  • Power C. & Elliott J. (2006) Cohort profile: 1958 British birth cohort (National Child Development Study). Int J Epidemiol 35, 3441.
  • Silman A. J. & Pearson J. E. (2002) Epidemiology and genetics of rheumatoid arthritis. Arthritis Res 4, S265-S272.
  • Singal D. P., Li J., Lei K. (1999) Genetics of rheumatoid arthritis (RA): two separate regions in the major histocompatibility complex contribute to susceptibility to RA. Immunol Lett 69, 301306.
  • Stephens M. & Balding D. J. (2009) Bayesian statistical methods for genetic association studies. Nat Rev Genet 10, 681690.
  • Taylor K. E. & Criswell L. A. (2009) Conditional analysis of the major histocompatibility complex in rheumatoid arthritis. BMC Proc 3, S36.
  • Tibshirani R. (1996) Regression shrinkage and selection via the lasso. J R Stat Soc Series B Stat Methodol 58, 267288.
  • Vignal C., Bansal A. T., Balding D. J., Binks M. H., Dickson M. C., Montgomery D. S., Wilson A.G. (2009) Genetic association of the major histocompatibility complex with rheumatoid arthritis implicates two non-DRB1 loci. Arthritis Rheum 60, 5362.
  • The Wellcome Trust Case Control Consortium (2007) Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 447, 661678.
  • Zanelli E., Jones G., Pascual M., Eerligh P., van der Slik A. R., Zwinderman A. H., Verduyn W., Schreuder G. M., Roovers E., Breedveld F. C., de Vries R. R., Martin J., Giphart M. J. (2001) The telomeric part of the HLA region predisposes to rheumatoid arthritis independently of the class II loci. Hum Immunol 62, 7584.