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  • Aguadé M. 2001. Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes, in Arabidopsis Thaliana. Molecular Biology and Evolution 18: 19.
  • Alazard P, Raffin A. 2003. La troisième génération de vergers à graines, de nouvelles variétés pour 2010. In: GroupePin maritime du futur, ed. Le progrès génétique en Forêt. Bordeaux, France: Groupe Pin maritime du futur, 4148.
  • Allona I, Quinn M, Shoop E, Swope K, St. Cyr S, Carlis J, Riedl J, Retzel E, Campbell MM, Sederoff R, Whetten RW. 1998. Analysis of xylem formation in pine by cDNA sequencing. Proceeding of the National Academy of Sciences, USA 95: 96939698.
  • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25: 33893402.
  • Arcade A, Faivre-Rampant P, Pâques LE, Prat D. 2002. Localisation of genomic regions controlling microdensitometric parameters of wood characteristics in hybrid larches. Annals of Forest Science 59: 607615.
  • Baradat P, Marpeau-Bezard A. 1988. Le pin maritime. Pinus Pinaster Ait: biologie et génétique des terpènes pour la connaissance et l’amélioration de l’espèce. PhD Thesis. University of Bordeaux-I, France.
  • Barber VA, Juday GP, Finney BP. 2000. Reduced growth of Alaskan white spruce in the twentieth century from temperature-induced drought stress. Nature 405: 6686673.
  • Bradshaw HD, Stettler RF. 1995. Molecular genetics of growth and development in populus. IV. Mapping QTLs with large effects on growth, form, and phenology traits in a forest tree. Genetics 139: 963973.
  • Brown GR, Bassoni DL, Gill GP, Fontana JR, Wheeler NC, Megraw RA, Davis MF, Sewell MM, Tuskan GA, Neale DB. 2003. Identification of quantitative trait loci influencing wood property traits in loblolly pine (Pinus taeda L). III. QTL verification and candidate gene mapping. Genetics 164: 1537–1546.
  • Brown GR, Gill GP, Kuntz RJ, Langley CH, Neale DB. 2004. Nucleotide diversity and linkage disequilibrium in loblolly pine. Proceeding of the National Academy of Sciences, USA 101: 1525515260.
  • Burban C, Petit R. 2003. Phylogeography of maritime pine inferred with organelle markers having contrasted inheritance. Molecular Ecology 12: 14871495.
  • Burdon RD, Broekhuizen P, Zabkiewicz JA. 1997a. Comparison of native-population and New Zealand land-race samples of Pinus radiata using cortical oleoresin monoterpenes. In: BurdonRD, MooreJM, eds. Proceedings of IUFRO ‘97: Genetics of Radiata Pine. NZ FRI Bulletin 203: 5056.
  • Burdon RD, Firth A, Low CB, Miller MA. 1997b. Native populations of Pinus radiata. New Zealand. Performance and potential. New Zealand Journal of Forestry Science 41: 3236.
  • Cassab GI. 1998. Plant cell wall proteins. Annals of Review of Plant Physiological Plant Molecular Biology 49: 281309.
  • Chagné D, Brown G, Lalanne C, Madur D, Pot D, Neale D, Plomion C. 2003. Comparative genome and QTL mapping between maritime and loblolly pines. Molecular Breeding 12: 185195.
  • Ching A, Caldwell KS, Jung M, Dolan M, Smith OS, Tingey S, Morgante M, Rafalski AJ. 2002. SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines. BMC Genetics 3: 19.
  • Costa P, Bahrman N, Frigerio JM, Kremer A, Plomion C. 1998. Water-deficit responsive proteins in Maritime pine. Plant Molecular Biology 39: 587596.
  • Dvornyk V, Sirviö A, Mikkonen M, Savolainen O. 2002. Low nucleotide diversity at the pal1 locus in the widely distributed Pinus sylvestris. Molecular Biology and Evolution 19: 179188.
  • Excoffier L, Smouse PE, Quattrà JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479491.
  • Fagard M, Höfte H, Vernhettes S. 2000. Cell wall mutants. Plant Physiology and Biochemistry 38: 1525.
  • García-Gil MR, Mikkonen M, Savolainen O. 2003. Nucleotide diversity at two phytochrome loci along a latitudinal cline in Pinus sylvestris. Molecular Ecology 12: 11951206.
  • Gion J-M, Lalanne C, Le Provost G, Ferry-Dumazet H, Paiva J, Frigerio JM, Chaumeil P, Barré A, De Daruvar A, Brach J, Claverol S, Bonneu M, Plomion C. 2005. The proteome of maritime pine wood forming tissue. Proteomics. (In press.)
  • González-Martínez SC, Alía R, Gil L. 2002. Population genetic structure in a Mediterranean pine (Pinus pinaster Ait.): a comparison of allozyme markers and quantitative traits. Heredity 89: 199206.
  • Grantham R. 1974. Amino acid difference formula to help explain protein evolution. Science 85: 862864.
  • Grattapaglia D, Bertolucci FLG, Penchel R, Sederoff RR. 1996. Genetic Mapping of Quantitative trait loci controlling growth and wood quality traits in Eucalyptus grandis using a maternal half-sib family and RAPD markers. Genetics 144: 12051214.
  • Hamrick JL, Godt JW. 1990. Allozyme diversity in plant species. In: Brown, A, Clegg, MT, Kahler, AL, Weir, BS, eds. Plant Population Genetics, Breeding and Genetic Resources. Sunderland, MA, USA: Sinauer Associates, 4363.
  • Hertzberg M, Aspeborg H, Schrader J, Andersson A, Erlandsson R, Blomqvist K, Bhalerao R, Uhlén Mathias Teeri TT, Lundeberg J, Sundber B, Nilsson P, Sandberg G. 2001. A transcriptional roadmap to wood formation. Proceeding of the National Academy of Sciences, USA 98: 1473214737.
  • Hey J, Wakeley J. 1997. A coalescent estimator of the population recombination rate. Genetics 145: 833846.
  • Hudson RR. 1987. Estimating the recombination parameter of a finite population model without selection. Genetical Research 50: 245250.
  • Ingvarsson PK. 2005. Nucleotide polymorphism and linkage disequilibrium within and among natural populations of European aspen (Populus tremula L., Salicaceae). Genetics doi:10.1534/genetics.104.034959.
  • Johnson R, Lipow S. 2002. Compatibility of breeding for increased wood production and longterm sustainability: the genetic variation of seed orchard seed and associated risks. In: Johnson, A C, Haynes, R W, Monserud, R A, eds. Congruent management of multiple resources, Proceedings from the Wood Compatibility Initiative Workshop 18. General Technical Report PNW-GTR-563. Portland, OR, USA: U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station, 169179.
  • Kado T, Ysohimura H, Tsumura Y, Tachida H. 2003. DNA variation in a conifer, Crypromeria japonica (Cupressaceae sensu lato). Genetics 164: 15471559.
  • Karhu A. 2001. Evolution and applications of pine microsatellites. PhD Thesis. University of Oulu, Finland.
  • Kimura M. 1983. The Neutral Theory of Molecular Evolution. Cambridge, MA, USA: Cambridge University Press.
  • Kumar S, Spelman RJ, Garrick DJ, Richardson TE, Lausberg M, Wilcox PL. 2000. Multiple-marker mapping of wood density loci in an outbred pedigree of radiata pine. Theoretical and Applied Genetics 100: 926933.
  • Le Provost G. 2003. Effet de la saison et d’un stress mécanique sur la variation du transcriptome dans le xylème en formation chez le pin maritime (Pinus Pinaster Ait.) PhD Thesis . University of Bordeaux-I, France.
  • Le Provost G, Paiva J, Pot D, Brach J, Plomion C. 2003. Seasonal variation in transcript accumulation in wood forming tissues of maritime pine (Pinus pinaster Ait.) with emphasis on a Cell wall Glycine Rich Protein. Planta 217: 820830.
  • Lerceteau EC, Plomion C, Andersson B. 2000. AFLP mapping and detection of quantitative trait loci (QTLs) for economically important traits in Pinus sylvestris: a preliminary study. Molecular Breeding 6: 451458.
  • Liphschitz N, Waisel Y. 1970. Effects of environment on relations between extension and cambial growth of Populus euphratica Oliv. New Phytologist 69: 1064.
  • Long JC, Williams RC, Urbanek M. 1995. An E-M algorithm and testing strategy for multiple-locus haplotypes. American Journal of Human Genetics 56: 799810.
  • Mangin B, Goffinet B, Rebai A. 1994. Constructing confidence intervals for QTL location. Genetics 138: 13011308.
  • Mariette S, Chagné D, Lézier C, Pastuszka P, Raffin A, Plomion C, Kremer A. 2001. Genetic diversity within and among Pinus pinaster populations: comparison between AFLP and microsatellite markers. Heredity 86: 469479.
  • Markussen T, Fladung M, Achere V, Favre JM, Faivre-Rampant P, Aragones A, Da Silva Perez Harvengt L, Ritter E. 2003. Identification of QTLs controlling growth, chemical and physical wood property traits in Pinus pinaster (Ait). Silvae Genetica 52: 815.
  • Moran GF, Bell JC, Eldridge KG. 1988. The genetic structure and the conservation of the five natural populations of Pinus radiata. Canadian Journal of Forest Research 18: 506514.
  • Moran GF, Thamarus KA, Raymond CA, Qiu D, Uren T, Southerton SG. 2002. Genomics of Eucalyptus wood traits. Annals of Forest Science 59: 645650.
  • Mouille G, Robin S, Lecomte M, Pagant S, Höfte H. 2003. Classification and identification of Arabidopsis cell wall mutants using Fourier Transform InfraRed (FT-IR) microspectroscopy. Plant Journal 35: 393404.
  • Neale DB, Savolainen O. 2004. Conifers as a model species for complex trait dissection. Trends in Plant Science 9: 325330.
  • Neale DB, Sewell MM, Brown G. 2002. Molecular dissection of the quantitative inheritance of wood property traits in loblolly pine. Annals of Forest Science 5: 595605.
  • Nei M. 1987. Molecular Evolutionary Genetics. New York, NY, USA: Columbia University Press.
  • Nicol F, His I, Jauneau A, Vernhettes S, Canut H, Höfte H. 1998. A Plasma membrane-bound putative endo-1,4-B-D-glucanase is required for normal wall assembly and cell elongation in Arabidopis. EMBO Journal 17: 55635576.
  • Peng L, Kawagoe Y, Hogan P, Delmer D. 2002. Sistostreol-β-glucoside as a primer for cellulose synthesis in plants. Science 295: 147150.
  • Petit RJ, Bahrman N, Baradat P. 1995. Comparison of genetic differentiation in maritime pine (Pinus pinaster Ait.) estimated using isozyme, total protein and terpenic loci. Heredity 75: 382389.
  • Plomion C, Bahrman N, Durel CE, O'Malley DM. 1995. Genomic mapping in Pinus pinaster (maritime pine) using RAPD and protein markers. Heredity 74: 661668.
  • Plomion C, Leprovost G, Stokes A. 2001. Wood Formation in Trees. Plant Physiology 127: 15131523.
  • Plomion C, Pionneau C, Brach J, Costa P, Baillère H. 2000. Compression wood responsive proteins in developing xylem of maritime pine (Pinus pinaster Ait.). Plant Physiology 123: 959969.
  • Pot D. 2004. Déterminisme génétique de la qualité du bois chez le pin maritime: du phénotype aux gènes. PhD Thesis. ENSA Rennes, France.
  • Pot D, Chantre G, Rozenberg P, Rodrigues JC, Jones Gwynn L, Pereira H, Hannrup B, Cahalan C, Plomion C. 2002. Genetic control of pulp and timber properties in maritime pine (Pinus pinaster Ait). Annals of Forest Science 59: 563575.
  • Ribeiro MM, Mariette S, Vendramin GG, Szmidt AE, Plomion C, Kremer A. 2002. Comparison of genetic diversity estimates within and among populations of maritime pine using chloroplast simple-sequence repeat and amplified fragment length polymorphism data. Molecular Ecology 11: 869877.
  • Riccardi F, Gazeau P, De Vienne D, Zivy M. 1998. Protein Changes in Response to Progressive Water Deficit in Maize: Quantitative Variation and Polypeptide Identification. Plant Physiology 117: 12531263.
  • Rozas J, Rozas R. 1999. Dnasp, version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174–175.
  • Rozen S, Skaletsky HJ. 2000. Primer3 on the WWW for general users and for biologist programmers. In: Krawest, S, Misener, S, eds. Bioinformatic Methods and Protocols: Methods in Molecular Biology. Totowa, NJ, USA: Human Press, 365386.
  • Rozenberg P, Cahalan C. 1997. Spruce and wood quality: genetic aspects (a review). Silvae Genetica 46: 270279.
  • Rozenberg P, Van Loo J, Hannrup B, Grabner M. 2002. Clonal variation of wood density record of cambium reaction to water deficit in Picea abies (L.) Karst. Annals of Forest Science 59: 533540.
  • Schneider K, Weisshaar B, Borchardt DC, Salamini F. 2001. SNP frequency and allelic haplotype structure of Beta vulgaris expressed genes. Molecular Breeding 8: 6374.
  • Sewell MM, Davis MF, Tuskan GA, Wheeler NC, Elam CC, Bassoni DL, Neale DB. 2002. Identification of QTLs influencing wood property traits in loblolly pine (Pinus taeda L.). II. Chemical wood properties. Theoretical Applied Genetics 104: 214222.
  • Shneider S, Ropessli D, Excoffier L. 2000. Arlequin ver 2000: A software for population genetics data analysis. Geneva, Switzerland: Genetics and Biometry Laboratory, University of Geneva.
  • Tajima F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437460.
  • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DANN polymorphism. Genetics 123: 585595.
  • Thornsberry JM, Goodman MM, Doebley J, Kresovich S, Nielsen D, Buckler ESIV. 2001. Dwarf8 polymorphisms associate with variation in flowering time. Nature Genetics 28: 286289.
  • Wakamiya I, Newton RJ, Johnston JS, Price HJ. 1993. Genome size and environmental factors in the genus Pinus. American Journal of Botany 80: 12351241.
  • Watterson GA. 1975. On the number of segregating sites in genetical models without recombination. Theoretical Population Biology 7: 256276.
  • Whetten R, MacKay JJ, Sederoff RR. 1998. Recent advances in understanding lignin biosynthesis. Annual Review of Plant Physiology and Plant Molecular Biology 49: 585609.
  • White SE, Doebley JF. 1999. The molecular evolution of terminal ear 1, a regulatory gene in the genius Zea. Genetics 153: 14551462.
  • Wu J, Krutovskii KV, Strauss SH. 1999. Nuclear DNA diversity, population differentiation, and phylogenetic relationship in the Californian closed-cone pines based on RAPD and allozyme markers. Genome 42: 893908.
  • Zhang Y, Sederoff RR, Allona I. 2000. Differential expression of genes encoding cell wall proteins in vascular tissues from vertical and bent pine trees. Tree Physiology 20: 457466.
  • Zhu YL, Song QJ, Hyten DL, Van Tassel CP, Matukumalli LK, Grimm DR, Hyatt SM, Fickus EW, Young ND, Gregan PB. 2003. Single nucleotide polymorphisms in soybean. Genetics 163: 11231134.
  • Zobel BJ, Van Buijtenen JP. 1989. Wood Variation. Springer Series in Wood Science. New York, NY, USA: Springer-Verlag.